mRNA_P-wetherbeei_contig1357.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1357.2.1
Unique NamemRNA_P-wetherbeei_contig1357.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1357.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1357contigP-wetherbeei_contig1357:4088..6969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2039
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005020.1
Cds size1407
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1357.2.1prot_P-wetherbeei_contig1357.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1357 4472..6721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.711805-UTR-P-wetherbeei_contig1357:4087..44711683185990.711805-UTR-P-wetherbeei_contig1357:4087..4471Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1357 4088..4471 -
1683185990.7951458-UTR-P-wetherbeei_contig1357:6721..69691683185990.7951458-UTR-P-wetherbeei_contig1357:6721..6969Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1357 6722..6969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.7293088-CDS-P-wetherbeei_contig1357:4471..45911683185990.7293088-CDS-P-wetherbeei_contig1357:4471..4591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1357 4472..4591 -
1683185990.7441118-CDS-P-wetherbeei_contig1357:4772..51991683185990.7441118-CDS-P-wetherbeei_contig1357:4772..5199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1357 4773..5199 -
1683185990.7638893-CDS-P-wetherbeei_contig1357:5410..58201683185990.7638893-CDS-P-wetherbeei_contig1357:5410..5820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1357 5411..5820 -
1683185990.7747817-CDS-P-wetherbeei_contig1357:6074..62491683185990.7747817-CDS-P-wetherbeei_contig1357:6074..6249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1357 6075..6249 -
1683185990.7845597-CDS-P-wetherbeei_contig1357:6446..67211683185990.7845597-CDS-P-wetherbeei_contig1357:6446..6721Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1357 6447..6721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1357.2.1

>prot_P-wetherbeei_contig1357.2.1 ID=prot_P-wetherbeei_contig1357.2.1|Name=mRNA_P-wetherbeei_contig1357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=469bp
MTESCPVCRDALAGLNFLARQVHVNSCLEGVGARNPTPPLAAPAAAVAPA
EARRRRRPGELPVGREAKLRRLKAIDKQLIKLAEERDLIMSSLDETGAAG
HAAASQFGVVPVAQPPPSRPPTPSPPRRNPSSHRDGQEWDNRMLGPDTEA
AVAALFSQPGSSSGSPPPRNPPLSSLSAAGGGGGGGNGQRGAAGRPPLAD
GRGSGRPSLWGLASGGLLPGDVETQGSSDGGGSDCSRAGGGDRGGSSGGG
GGGRGGTDDGMPAYEGMSTQELKGIMASYGLKQRPARVTIVSKLQEMWIA
LHPAAAPSGDGASDSSSGHDCSSRSDGPPVRLMRAGGTWSDDRQQQQPCQ
RPEGGGGSGSSGHQAPMATTTAAASVLGAAATAAARRKAQSPQNAAAARG
ADAEAAIRSILHNFFWTRPHLHQGMLLFQSIDVGHALRLLHDSGVKCSRL
QLARYFDDCGVTCTKARA*
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mRNA from alignment at P-wetherbeei_contig1357:4088..6969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1357.2.1 ID=mRNA_P-wetherbeei_contig1357.2.1|Name=mRNA_P-wetherbeei_contig1357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2882bp|location=Sequence derived from alignment at P-wetherbeei_contig1357:4088..6969- (Phaeothamnion wetherbeei SAG_119_79)
CTGGAAAAGAAAATGAGCGGTGAGAGCGTTCTGTGGCGGTTACTTTGATG
CTTTTCTAATTTGGGGAAGTTAAAGAAGGCGCCCTTGCCTGCTTCCGCAG
CTCATTGTGCATTTATAGCACCTTTCACTGGGGATTTGCTGTCCGCGCGG
TGCTCTGGCCTCATCGTTCCCCTCCGTCAGTGGCGGTTTGCCATTTTCGC
ATCCTTGAGAAATCCTGAGCTTCGAGAAGCCCCGACCGCGCACCCGAAAT
GACGGAGTCGTGCCCTGTGTGCCGCGATGCCCTGGCGGGACTGAATTTCC
TCGCCAGGCAGGTGCACGTGAATAGCTGTCTCGAAGGAGTGGGAGCGAGA
AATCCCACCCCTCCGCTTGCAGCTCCGGCGGCAGCAGTTGCACCGGCAGA
GGCCCGAAGGCGGCGGCGGCCCGGCGAACTGCCTGTTGGCCGGGAAGCCA
AGCTGAGGCGGCTGAAGGCCATCGATAAACAGCTCATAAAGCTGGCGGAG
GAGCGCGACCTCATCATGAGCAGGTGCGCCGCCAACGAACGTTTATTCAA
GCGGGAAAACAAAGGGGTTTTAAAGCATGGGTGTGAGCAATGCAGATGAA
ACGTAGTGTTCTCTCTGCGGTCCTTCGTCAAAGAGAAAGTTTCAAAGGTT
TGAAGTGTTGCAGCCTTCGTGATGTTTCCAATGCCCGCCCCGTTCACCTG
CTGGCCGTTTGCTTCTACAGTCTGGACGAAACAGGCGCTGCAGGGCACGC
TGCTGCATCCCAATTTGGAGTTGTGCCAGTGGCACAGCCACCACCTTCAC
GGCCACCAACGCCGTCACCGCCGCGCCGCAACCCATCCTCACATCGGGAC
GGTCAAGAATGGGACAATAGAATGCTGGGACCCGACACCGAGGCGGTGCG
TCCGAGGGGGGCTGAGGGTCATTGCGGGAGCTGTAAATTACTTAAAAGCT
TCCCGAACAGTGTCACATTCTTTCAATGGATGCGACGCACGTTTTCGCTC
TCCTTCATGGCGATTTGCGTGTCGAATCTTTTCCTTTCTTCTTTGTTTGA
CGCGTGCATGGACTGAAACCGCGTCCTTTTGGCCGTTTCCTCACAACACA
TCCCTCTTGGCCCCCGAAAAAATCCAACACAAATTGAAACCGTTCTCAGG
CGGTGGCGGCCCTCTTTTCGCAGCCCGGCAGCAGTAGCGGCAGCCCTCCG
CCCCGCAACCCGCCCCTAAGCTCTTTGTCGGCGGCCGGCGGTGGCGGCGG
CGGCGGCAATGGGCAGCGGGGCGCTGCGGGCCGGCCGCCACTAGCCGACG
GCAGAGGAAGCGGGCGGCCGTCCCTTTGGGGCCTCGCCAGCGGCGGCCTG
CTGCCGGGCGACGTTGAGACGCAGGGAAGCAGCGACGGTGGTGGCAGCGA
CTGCAGCCGGGCGGGCGGAGGCGATCGCGGCGGGAGCAGCGGCGGTGGCG
GCGGCGGTAGGGGCGGCACAGACGATGGGATGCCTGCGTACGAAGGAATG
TCGACGCAGGAACTTAAGGGGATCATGGCGAGCTATGGCCTCAAGCAGCG
CCCGGCCCGGTAAAAGCCTATCTATGTTATGCTGCATGATGATGCTTTCG
TTGATACTTTTGTTGCCAAAGATATGGACACCACCTCTTGCGTTCGACAT
ACTATGCAGTTTCCTCCTTCCAAGATCGCCGTGGGAAAATCTGTGACGTG
CGTCTAACGCTGCGCCTTATCCCCCACATTATCCGCACGCTTCAACAAAT
CTTATGGCGCTCCGCGGCAGAGTGACCATAGTGAGCAAGTTACAAGAGAT
GTGGATCGCGCTCCACCCGGCTGCCGCTCCCTCCGGCGACGGTGCCTCGG
ACTCGTCCTCCGGTCATGACTGCAGCAGCAGATCAGACGGCCCTCCGGTA
CGCCTCATGCGGGCCGGTGGGACGTGGAGCGATGACAGACAGCAGCAGCA
ACCGTGTCAGAGGCCGGAGGGCGGTGGTGGCAGCGGCAGCAGCGGCCACC
AGGCGCCAATGGCGACGACGACGGCGGCGGCGTCGGTGTTGGGTGCAGCA
GCGACTGCGGCGGCGCGGCGGAAGGCGCAGTCTCCGCAGAATGCGGCTGC
CGCCCGCGGCGCGGATGCCGAGGCGGCCATTCGAAGCATCCTGCACAACT
TCTTTTGGACGCGGCCGCATCTTCACCAAGGCATGTTGCTCTTTCAGGTA
ATACGGAAGATTTTCTGGAATATCTTTTGATGTGCCTGCAGCGTCTTCTG
ATTTGGGGGCCTAGCTCTTGTTGTCTGGTGTTGTCAGTGGTCCTCACCCT
GTTTTTCTTTGTCATCGTTTCACATTGTGACGTTTCATTTCGACGTTTTG
TCGCTTCTGCATCTTTTCCCTGCCGCAGAGCATCGACGTGGGTCACGCGC
TGCGGCTGTTGCATGACTCAGGCGTGAAGTGCTCGCGGCTGCAGCTCGCT
CGCTACTTCGACGACTGTGGTGTCACGTGTACCAAGGCCCGCGCCTAGCT
GACGGCAGAGACTGACCCTCGTCTGACGCACAGTCTGATACCCATTGCAC
TGCAATTGGGACGGTCGCTGCCGACCCGCCGGGACGACACTCGGCTGCCA
TGACTGATTGGCGGAGGAAGAGGATGGGAGTGCTGTTGCCGTCAAATCGT
GGCAAACAGCGCCCTCTCTCTCAGATGCTCTCGCTGAGATTTTTTTTGGG
CATATGCGTTTCAACGGGAAAGGCCTAGGGCTATCGTTCCGTGGCTCCCT
TGTGCACTTCCGAAATGTGTTTACCTTGCAAAAAGTGGTTACGCCGCGCT
GAAAAGGCACCGACAAGTATCTTTCTCTAAAACCGCAAAGGATGAAAGCA
AGGAATCGGAAAGAGCGGCGACAGCCATATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1357:4088..6969-

>mRNA_P-wetherbeei_contig1357.2.1 ID=mRNA_P-wetherbeei_contig1357.2.1|Name=mRNA_P-wetherbeei_contig1357.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1407bp|location=Sequence derived from alignment at P-wetherbeei_contig1357:4088..6969- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGAGTCGTGCCCTGTGTGCCGCGATGCCCTGGCGGGACTGAATTT
CCTCGCCAGGCAGGTGCACGTGAATAGCTGTCTCGAAGGAGTGGGAGCGA
GAAATCCCACCCCTCCGCTTGCAGCTCCGGCGGCAGCAGTTGCACCGGCA
GAGGCCCGAAGGCGGCGGCGGCCCGGCGAACTGCCTGTTGGCCGGGAAGC
CAAGCTGAGGCGGCTGAAGGCCATCGATAAACAGCTCATAAAGCTGGCGG
AGGAGCGCGACCTCATCATGAGCAGTCTGGACGAAACAGGCGCTGCAGGG
CACGCTGCTGCATCCCAATTTGGAGTTGTGCCAGTGGCACAGCCACCACC
TTCACGGCCACCAACGCCGTCACCGCCGCGCCGCAACCCATCCTCACATC
GGGACGGTCAAGAATGGGACAATAGAATGCTGGGACCCGACACCGAGGCG
GCGGTGGCGGCCCTCTTTTCGCAGCCCGGCAGCAGTAGCGGCAGCCCTCC
GCCCCGCAACCCGCCCCTAAGCTCTTTGTCGGCGGCCGGCGGTGGCGGCG
GCGGCGGCAATGGGCAGCGGGGCGCTGCGGGCCGGCCGCCACTAGCCGAC
GGCAGAGGAAGCGGGCGGCCGTCCCTTTGGGGCCTCGCCAGCGGCGGCCT
GCTGCCGGGCGACGTTGAGACGCAGGGAAGCAGCGACGGTGGTGGCAGCG
ACTGCAGCCGGGCGGGCGGAGGCGATCGCGGCGGGAGCAGCGGCGGTGGC
GGCGGCGGTAGGGGCGGCACAGACGATGGGATGCCTGCGTACGAAGGAAT
GTCGACGCAGGAACTTAAGGGGATCATGGCGAGCTATGGCCTCAAGCAGC
GCCCGGCCCGAGTGACCATAGTGAGCAAGTTACAAGAGATGTGGATCGCG
CTCCACCCGGCTGCCGCTCCCTCCGGCGACGGTGCCTCGGACTCGTCCTC
CGGTCATGACTGCAGCAGCAGATCAGACGGCCCTCCGGTACGCCTCATGC
GGGCCGGTGGGACGTGGAGCGATGACAGACAGCAGCAGCAACCGTGTCAG
AGGCCGGAGGGCGGTGGTGGCAGCGGCAGCAGCGGCCACCAGGCGCCAAT
GGCGACGACGACGGCGGCGGCGTCGGTGTTGGGTGCAGCAGCGACTGCGG
CGGCGCGGCGGAAGGCGCAGTCTCCGCAGAATGCGGCTGCCGCCCGCGGC
GCGGATGCCGAGGCGGCCATTCGAAGCATCCTGCACAACTTCTTTTGGAC
GCGGCCGCATCTTCACCAAGGCATGTTGCTCTTTCAGAGCATCGACGTGG
GTCACGCGCTGCGGCTGTTGCATGACTCAGGCGTGAAGTGCTCGCGGCTG
CAGCTCGCTCGCTACTTCGACGACTGTGGTGTCACGTGTACCAAGGCCCG
CGCCTAG
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