mRNA_P-wetherbeei_contig13560.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13560.1.1
Unique NamemRNA_P-wetherbeei_contig13560.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13560.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13560contigP-wetherbeei_contig13560:432..1050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size331
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.5446458-CDS-P-wetherbeei_contig13560:431..4981683185990.5446458-CDS-P-wetherbeei_contig13560:431..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13560 432..498 +
1683185990.553442-CDS-P-wetherbeei_contig13560:787..10501683185990.553442-CDS-P-wetherbeei_contig13560:787..1050Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13560 788..1050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13560.1.1prot_P-wetherbeei_contig13560.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13560 432..1050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13560.1.1

>prot_P-wetherbeei_contig13560.1.1 ID=prot_P-wetherbeei_contig13560.1.1|Name=mRNA_P-wetherbeei_contig13560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
GHAAAAGVPPRGQLDRLGDARDIIASTDCHRHRLPCRRHHRRGHCRHRLL
LPPSRIRLFLPSRTKNAPISTKMPTKRSKRQTKRTARREQVLHGLDKVMV
EDEAMHGRFV
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mRNA from alignment at P-wetherbeei_contig13560:432..1050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13560.1.1 ID=mRNA_P-wetherbeei_contig13560.1.1|Name=mRNA_P-wetherbeei_contig13560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=619bp|location=Sequence derived from alignment at P-wetherbeei_contig13560:432..1050+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCATGCGGCTGCTGCCGGCGTACCTCCACGAGGACAACTCGACCGTCT
GGGAGATGCTCGAGATAGTGAGCGAAAAACGGCTTCCTGTTTCTGTTGGT
AGTTGTTAGAAGCGTTCTGCTTGTTGTCTTTTCTCGGGCAGCGATTTCTC
TTGGCGGCTTGGAACTAGTGGGCTCCTTCACGCTTCCGGCCGCCTCCTCT
TTCCATGAAATGTTGACGGGGCAGCAGGTTGTGGAGAGGAGCCGCGTTTG
CATCTTGGCATTCGCTCTCCACGCCCTTCGCCCCGCGCCATAATTTGCTG
AGCATCGTCTGATGCCGCCACTCCCACCGTCACCACCGCTGCCGCCGCCG
CTACAGTCATTGCCTCCACTGACTGCCATCGACACCGTCTTCCTTGCCGC
CGCCACCACCGCCGCGGCCACTGCCGCCACCGCTTGCTTCTGCCGCCGTC
GCGGATCCGGCTATTTCTGCCCTCGCGCACCAAAAACGCACCAATATCTA
CAAAAATGCCAACAAAACGCTCGAAACGCCAAACGAAACGCACGGCGCGG
AGAGAGCAGGTGCTGCATGGGCTGGACAAGGTGATGGTCGAAGACGAGGC
GATGCACGGCCGCTTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13560:432..1050+

>mRNA_P-wetherbeei_contig13560.1.1 ID=mRNA_P-wetherbeei_contig13560.1.1|Name=mRNA_P-wetherbeei_contig13560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig13560:432..1050+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCATGCGGCTGCTGCCGGCGTACCTCCACGAGGACAACTCGACCGTCT
GGGAGATGCTCGAGATATCATTGCCTCCACTGACTGCCATCGACACCGTC
TTCCTTGCCGCCGCCACCACCGCCGCGGCCACTGCCGCCACCGCTTGCTT
CTGCCGCCGTCGCGGATCCGGCTATTTCTGCCCTCGCGCACCAAAAACGC
ACCAATATCTACAAAAATGCCAACAAAACGCTCGAAACGCCAAACGAAAC
GCACGGCGCGGAGAGAGCAGGTGCTGCATGGGCTGGACAAGGTGATGGTC
GAAGACGAGGCGATGCACGGCCGCTTCGTC
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