mRNA_P-wetherbeei_contig13555.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13555.1.1
Unique NamemRNA_P-wetherbeei_contig13555.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2FV74_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV74_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.320e-24
Identity = 44/58 (75.86%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            +++EERKAMMA+YFKRQE+LKKLAEA DDDYLAS+WADPK M+++L+GTGAIKAPG++
Sbjct:   46 VSEEERKAMMAHYFKRQEDLKKLAEASDDDYLASSWADPKAMKKSLQGTGAIKAPGLR 103          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A835YNS8_9STRA (Putative flagellar basal body protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNS8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.260e-23
Identity = 45/60 (75.00%), Postives = 56/60 (93.33%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQRF 180
            +++EERKAMMA+YFKRQEE+KKLAEA DDDYL SAWADP+Q+Q++LRGTGAI APGV++ 
Sbjct:  222 VSEEERKAMMAFYFKRQEEMKKLAEANDDDYLGSAWADPRQLQKSLRGTGAISAPGVRKL 281          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: D8LF14_ECTSI (Putative: flagellar basal body protein [Chlamydomonas reinhardtii] n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF14_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.800e-23
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGV 171
            ++++ERKAMMA+YFKRQEELK+LAEA DDDYLASAWADPKQ+QR+LRGTG ++APGV
Sbjct:  226 VSEDERKAMMAFYFKRQEELKRLAEANDDDYLASAWADPKQLQRSLRGTGTVRAPGV 282          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2UZF3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZF3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.480e-22
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            ++++ERKAMMA+YFKRQEE+KKLAEA DDDYLASAWADPK +QR LRG G+IKAPGV+
Sbjct:  228 VSEDERKAMMAFYFKRQEEIKKLAEANDDDYLASAWADPKSLQRGLRGVGSIKAPGVK 285          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2C740_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C740_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.940e-22
Identity = 44/58 (75.86%), Postives = 56/58 (96.55%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            +++EERKAMMA+YFKRQE+LKKLAEA DDDYLAS+WADPK M+++L+GTGAIKAPG++
Sbjct:  226 VSEEERKAMMAHYFKRQEDLKKLAEASDDDYLASSWADPKAMKKSLQGTGAIKAPGLR 283          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2PIW6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PIW6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.910e-21
Identity = 41/60 (68.33%), Postives = 55/60 (91.67%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQRF 180
            ++++ERKAMMAYYFK+QE++KKLAEA++DDYL SAWADPK M+R+L+G G ++APGV RF
Sbjct:  218 VSEDERKAMMAYYFKKQEDMKKLAEADEDDYLNSAWADPKNMKRSLQGIGEVRAPGVSRF 277          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2WGB4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGB4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.990e-21
Identity = 39/58 (67.24%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            +++EERKAMMA+YFKRQEE+K++AEA+DD+YLAS+WADPK +QR+LRG G ++APG++
Sbjct:  119 VSEEERKAMMAHYFKRQEEMKRMAEAQDDEYLASSWADPKALQRSLRGQGQVRAPGLK 176          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S2WGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGM0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.180e-20
Identity = 39/58 (67.24%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            +++EERKAMMA+YFKRQEE+K++AEA+DD+YLAS+WADPK +QR+LRG G ++APG++
Sbjct:  226 VSEEERKAMMAHYFKRQEEMKRMAEAQDDEYLASSWADPKALQRSLRGQGQVRAPGLK 283          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A6U4FW40_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FW40_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.260e-19
Identity = 39/57 (68.42%), Postives = 53/57 (92.98%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGV 171
            +++EERKAMMA+YFK+QEE+KKLAEA++DDYL S+WADPK +QR LRG G+++APG+
Sbjct:  229 ISEEERKAMMAHYFKKQEEMKKLAEADEDDYLNSSWADPKALQRNLRGMGSVRAPGL 285          
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Match: A0A7S4N8L1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.990e-18
Identity = 38/58 (65.52%), Postives = 54/58 (93.10%), Query Frame = 1
Query:    1 MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTGAIKAPGVQ 174
            ++++ERKAMMA+Y KRQEELK+LAE+E+DDYL S+WADPK+M+++L+G G IKAPG++
Sbjct:  226 VSEDERKAMMAHYSKRQEELKRLAESEEDDYLNSSWADPKEMKKSLQGLGDIKAPGLR 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FV74_9STRA6.320e-2475.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YNS8_9STRA1.260e-2375.00Putative flagellar basal body protein n=1 Tax=Trib... [more]
D8LF14_ECTSI1.800e-2378.95Putative: flagellar basal body protein [Chlamydomo... [more]
A0A7S2UZF3_9STRA1.480e-2277.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C740_9STRA3.940e-2275.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2PIW6_9STRA1.910e-2168.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WGB4_9STRA3.990e-2167.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WGM0_9STRA3.180e-2067.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4FW40_9STRA1.260e-1968.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4N8L1_9STRA4.990e-1865.52Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13555contigP-wetherbeei_contig13555:1546..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps262729
PFAMsDUF2870
Model size183
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.63e-15
EggNOG OGs2CME9@1|root,2QQ3Z@2759|Eukaryota,2XDZY@2836|Bacillariophyta
DescriptionProtein of unknown function (DUF2870)
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.4005165-CDS-P-wetherbeei_contig13555:1545..17281683185990.4005165-CDS-P-wetherbeei_contig13555:1545..1728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13555 1546..1728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13555.1.1prot_P-wetherbeei_contig13555.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13555 1546..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13555.1.1

>prot_P-wetherbeei_contig13555.1.1 ID=prot_P-wetherbeei_contig13555.1.1|Name=mRNA_P-wetherbeei_contig13555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MNQEERKAMMAYYFKRQEELKKLAEAEDDDYLASAWADPKQMQRTLRGTG
AIKAPGVQRF*
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mRNA from alignment at P-wetherbeei_contig13555:1546..1728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13555.1.1 ID=mRNA_P-wetherbeei_contig13555.1.1|Name=mRNA_P-wetherbeei_contig13555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig13555:1546..1728- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCAGGAGGAGCGCAAGGCGATGATGGCGTACTACTTCAAGCGGCA GGAGGAGCTCAAGAAGCTGGCGGAAGCAGAGGATGACGACTATCTCGCGT CAGCGTGGGCCGACCCCAAACAGATGCAGCGCACGCTCCGCGGCACCGGT GCCATTAAGGCCCCCGGCGTGCAGCGCTTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13555:1546..1728-

>mRNA_P-wetherbeei_contig13555.1.1 ID=mRNA_P-wetherbeei_contig13555.1.1|Name=mRNA_P-wetherbeei_contig13555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig13555:1546..1728- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCAGGAGGAGCGCAAGGCGATGATGGCGTACTACTTCAAGCGGCA
GGAGGAGCTCAAGAAGCTGGCGGAAGCAGAGGATGACGACTATCTCGCGT
CAGCGTGGGCCGACCCCAAACAGATGCAGCGCACGCTCCGCGGCACCGGT
GCCATTAAGGCCCCCGGCGTGCAGCGCTTCTAG
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