mRNA_P-wetherbeei_contig13548.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13548.3.1
Unique NamemRNA_P-wetherbeei_contig13548.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: W7U295_9STRA (Autophagy-related 7 isoform cra_a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U295_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.610e-28
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGR----LDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+PVASA+AVEL VALLHHP RH +PAD           G EA+G     LDDPDRPLG+LP QIRG++AHF+ +L  T+AF  CT C+PAV+  Y+
Sbjct:  498 RPGLAPVASALAVELMVALLHHPLRHRAPAD-----------GGEASGLGHRFLDDPDRPLGILPQQIRGYLAHFTTILPVTRAFQHCTGCAPAVIEAYK 586
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: K8Z8S3_NANGC (Autophagy-related protein 7 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8S3_NANGC)

HSP 1 Score: 115 bits (288), Expect = 6.660e-28
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGR----LDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+PVASA+AVEL VALLHHP RH +PAD           G EA+G     LDDPDRPLG+LP QIRG++AHF+ +L  T+AF  CT C+PAV+  Y+
Sbjct:  508 RPGLAPVASALAVELMVALLHHPLRHRAPAD-----------GGEASGLGHRFLDDPDRPLGILPQQIRGYLAHFTTILPVTRAFQHCTGCAPAVIEAYK 596
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A4D9DI03_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DI03_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.900e-28
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGR----LDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+PVASA+AVEL VALLHHP RH +PAD           G EA+G     LDDPDRPLG+LP QIRG++AHF+ +L  T+AF  CT C+PAV+  Y+
Sbjct:  623 RPGLAPVASALAVELMVALLHHPLRHRAPAD-----------GGEASGLGHRFLDDPDRPLGILPQQIRGYLAHFTTILPVTRAFQHCTGCAPAVIEAYK 711
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A2K1IFZ5_PHYPA (Ubiquitin-like modifier-activating enzyme ATG7 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IFZ5_PHYPA)

HSP 1 Score: 102 bits (254), Expect = 2.650e-23
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+P+A+++AVELAVALLHHP    +P D             +AT   D+ + PLG++PHQ+RGF+AH++QL+   QAFD CTACS +VVR +R
Sbjct:  567 RPGLAPIAASLAVELAVALLHHPLGVSAPGD-------------QATSLTDNTEHPLGIMPHQVRGFIAHYAQLVVTGQAFDKCTACSASVVREFR 649
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A7S3JPH9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPH9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.600e-23
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+P+ASAMAVELA+ALLHHP  H +PAD+             +    +DP+RPLG+LPH IRGF+ HF+ +  AT  F  CTACS  VV  YR
Sbjct:  536 RPGLAPIASAMAVELAIALLHHPLGHAAPADSEQ---------ILSKHTSNDPNRPLGILPHSIRGFLTHFTTVAPATNKFHQCTACSDTVVAHYR 622
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A1Y1IIG1_KLENI (Ubiquitin-like modifier-activating enzyme ATG7 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIG1_KLENI)

HSP 1 Score: 97.4 bits (241), Expect = 1.520e-21
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRY 285
            RPGL+P+A+A+AVEL VAL HHP   H+PAD+   G     G            +PLGL+PHQ+RGF+A FSQLL    AFD CTACS AVVR Y
Sbjct:  586 RPGLAPMAAALAVELLVALRHHPAGLHAPADSTPPGAAFPAGATA---------QPLGLVPHQVRGFLAFFSQLLVTGHAFDKCTACSAAVVREY 671
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A8J2SKW6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKW6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.190e-21
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+P A+A+AVEL VALLHHPR   +PAD            A   G     +RPLGL+PH IRGF+ H++ +L  T AFD C AC+PAVV  YR
Sbjct:  507 RPGLAPAAAALAVELLVALLHHPREGAAPADP-----------ATPPGAPLPGNRPLGLVPHSIRGFLTHYATVLPTTPAFDRCAACAPAVVAAYR 591
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A5N5DPV6_9PEZI (Ubiquitin-like modifier-activating enzyme ATG7 n=4 Tax=Botryosphaeriaceae TaxID=45131 RepID=A0A5N5DPV6_9PEZI)

HSP 1 Score: 95.1 bits (235), Expect = 9.850e-21
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPG++P+ASAM VEL V++L HP R H+PA T    D      A ++      D PLGL+PHQIRGF++ FS L    Q +DCC+ACS  +V RYR
Sbjct:  581 RPGIAPIASAMLVELLVSILQHPLRAHAPAPTNPSPDN-DPKAASSSSAKPAFDHPLGLVPHQIRGFLSSFSNLAIRGQPYDCCSACSDRIVERYR 675
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: A0A7S2AMB3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMB3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.350e-20
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPGL+PVASA+AVEL V+LLHHP  HH+PAD                G   D D+PLG+LPHQ+RGF+  +  +     AF CCT C+  V + Y+
Sbjct:  231 RPGLAPVASALAVELCVSLLHHPLEHHAPADPTP--------SCPMNGSPSDADKPLGMLPHQLRGFLGTYGIVHPVGNAFSCCTGCAAPVCQAYQ 318
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BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Match: R1EMG8_BOTPV (Ubiquitin-like modifier-activating enzyme ATG7 n=2 Tax=Botryosphaeriaceae TaxID=45131 RepID=R1EMG8_BOTPV)

HSP 1 Score: 94.0 bits (232), Expect = 2.500e-20
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 RPGLSPVASAMAVELAVALLHHPRRHHSPAD-TRSRGDGRGCGGAEATGRLDDPDRPLGLLPHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR 288
            RPG++P+ASAM VEL V++L HP R H+PA  T S         A A+    D + PLGL+PHQIRGF++ FS L    Q +DCC+ACS  +V RYR
Sbjct:  579 RPGIAPIASAMLVELLVSILQHPLRAHAPAPATPSTNPTNNDPKASASSIKPDYEHPLGLVPHQIRGFLSTFSNLNIRGQPYDCCSACSDRIVERYR 675
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13548.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U295_9STRA6.610e-2858.00Autophagy-related 7 isoform cra_a n=1 Tax=Nannochl... [more]
K8Z8S3_NANGC6.660e-2858.00Autophagy-related protein 7 n=1 Tax=Nannochloropsi... [more]
A0A4D9DI03_9STRA6.900e-2858.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2K1IFZ5_PHYPA2.650e-2351.04Ubiquitin-like modifier-activating enzyme ATG7 n=2... [more]
A0A7S3JPH9_9STRA3.600e-2353.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1Y1IIG1_KLENI1.520e-2154.74Ubiquitin-like modifier-activating enzyme ATG7 n=1... [more]
A0A8J2SKW6_9STRA5.190e-2152.08Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5N5DPV6_9PEZI9.850e-2150.00Ubiquitin-like modifier-activating enzyme ATG7 n=4... [more]
A0A7S2AMB3_9STRA1.350e-2046.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
R1EMG8_BOTPV2.500e-2050.52Ubiquitin-like modifier-activating enzyme ATG7 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13548contigP-wetherbeei_contig13548:935..1490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S73_159V6.1
PFAMsATG7_N,ThiF
Model size291
Max annot lvl35493|Streptophyta
KEGG koko:K08337
KEGG Pathwayko04136,ko04138,ko04140,ko04216,map04136,map04138,map04140,map04216
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000407,GO:0000422,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008641,GO:0009056,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009620,GO:0009987,GO:0009991,GO:0010150,GO:0016043,GO:0016236,GO:0016237,GO:0016740,GO:0016874,GO:0016877,GO:0018410,GO:0019538,GO:0019778,GO:0019779,GO:0022411,GO:0022607,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043170,GO:0043207,GO:0043412,GO:0043562,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0061726,GO:0061919,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0090693,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1905037
Exons2
Evalue4.01e-19
EggNOG OGsCOG0476@1|root,KOG2337@2759|Eukaryota,37NWE@33090|Viridiplantae,3G998@35493|Streptophyta
DescriptionUbiquitin-like modifier-activating enzyme atg7
Cds size261
COG categoryH
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.2489593-UTR-P-wetherbeei_contig13548:934..9641683185990.2489593-UTR-P-wetherbeei_contig13548:934..964Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13548 935..964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.2617128-CDS-P-wetherbeei_contig13548:964..11231683185990.2617128-CDS-P-wetherbeei_contig13548:964..1123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13548 965..1123 +
1683185990.2752423-CDS-P-wetherbeei_contig13548:1388..14901683185990.2752423-CDS-P-wetherbeei_contig13548:1388..1490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13548 1389..1490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13548.3.1prot_P-wetherbeei_contig13548.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13548 965..1490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13548.3.1

>prot_P-wetherbeei_contig13548.3.1 ID=prot_P-wetherbeei_contig13548.3.1|Name=mRNA_P-wetherbeei_contig13548.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MAVELAVALLHHPRRHHSPADTRSRGDGRGCGGAEATGRLDDPDRPLGLL
PHQIRGFMAHFSQLLTATQAFDCCTACSPAVVRRYR*
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mRNA from alignment at P-wetherbeei_contig13548:935..1490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13548.3.1 ID=mRNA_P-wetherbeei_contig13548.3.1|Name=mRNA_P-wetherbeei_contig13548.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=556bp|location=Sequence derived from alignment at P-wetherbeei_contig13548:935..1490+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCCGGGCCTGTCTCCCGTCGCGTCGGCGATGGCTGTCGAGCTAGCTGT
GGCGCTCCTCCACCATCCGCGCCGCCATCATAGCCCCGCCGACACGCGCA
GCCGCGGCGATGGCAGGGGCTGCGGCGGTGCGGAGGCGACGGGGCGGCTG
GATGACCCGGACCGACCGCTGGGCCTGCTACCGCACCAGGTGAGGACGAA
ACTGGTTGCGATAACATTCAGTCAGCCTGGCTTGGCGCTGACTGAATGGG
TGTTGAAGGGGGCCCAAACAGCCTCCAGGTTCCGGTGTTCCATAAGCTTG
GTTTGGGCCAGCTTTCTCTCCCAGCGATTGCAGTGTCCACGTTATTGTTA
ATTCAGAGTAGATTTGTGTCCGGCGTGGAAGTAAAGGTGCTCTCTCTCTC
AAAATCGCGTCTCTTATGAACTGTACTATCCCTGCCCGCCTTCTTTTGCT
GCAGATCCGCGGCTTCATGGCGCACTTCTCGCAGCTCCTGACGGCGACGC
AGGCCTTCGACTGCTGCACGGCGTGCTCCCCTGCCGTCGTCCGGCGCTAC
CGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13548:935..1490+

>mRNA_P-wetherbeei_contig13548.3.1 ID=mRNA_P-wetherbeei_contig13548.3.1|Name=mRNA_P-wetherbeei_contig13548.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig13548:935..1490+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCGAGCTAGCTGTGGCGCTCCTCCACCATCCGCGCCGCCATCA
TAGCCCCGCCGACACGCGCAGCCGCGGCGATGGCAGGGGCTGCGGCGGTG
CGGAGGCGACGGGGCGGCTGGATGACCCGGACCGACCGCTGGGCCTGCTA
CCGCACCAGATCCGCGGCTTCATGGCGCACTTCTCGCAGCTCCTGACGGC
GACGCAGGCCTTCGACTGCTGCACGGCGTGCTCCCCTGCCGTCGTCCGGC
GCTACCGGTGA
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