mRNA_P-wetherbeei_contig13544.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13544.1.1
Unique NamemRNA_P-wetherbeei_contig13544.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A662YBH9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBH9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.330e-23
Identity = 69/157 (43.95%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    1 SVAARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAI-----DGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            S A RL L LRLG  L+   + EAA   +L A  +                F     WLGVG+ASLRLE W+ A+ AL  A R+D T P  WGYLAL +L    A+        +  + QALR  L++PALLREL+ A VA+ RL  AE LLRRSL+
Sbjct:  956 SEAQRLALYLRLGLALLNSSQFEAAEATFLQAGDE----------------FRVASTWLGVGIASLRLERWERAQMALAEANRLDATNPDVWGYLALFVLSAHNAVTPRDEQEGQQFVAQALRHNLSNPALLRELSNAFVAIDRLESAEKLLRRSLA 1096          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A6A3NWB4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NWB4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.580e-23
Identity = 66/153 (43.14%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   13 RLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAIDG-----AEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            RLGL LRLG  L+   + EAA   +L A  +                F     WLGVG+A +RLE W+ A+ AL  A ++DP+ P  W YLALL L    ++ G     A+  + QALR  L++PALLREL+ A VA+ RL  AE LLRRSL+
Sbjct:  940 RLGLYLRLGLALLHSQQFEAAETTFLLACDE----------------FRVASCWLGVGIACVRLEKWERAQMALSEANKLDPSNPDVWAYLALLALTAHGSVSGHDEKDAQQFVSQALRHNLSNPALLRELSNAFVAIDRLETAEKLLRRSLA 1076          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: G4YFL2_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YFL2_PHYSP)

HSP 1 Score: 103 bits (256), Expect = 1.160e-22
Identity = 66/153 (43.14%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   13 RLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAID-----GAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            RLGL LRLG  L+   ++E A   +L A  +                F     WLGVG+A LRLE W+ A+ AL  A R+DP+ P  W YLALL L    ++       A+  + QALR  L++PALLREL+ A VA+ RL  AE LLRRSL+
Sbjct:  912 RLGLYLRLGLALLHSQQIEVAETTFLLACDE----------------FRVASCWLGVGIACLRLEKWERAQMALSEANRLDPSNPDVWAYLALLALTAHGSVSVRDEKDAQQFVSQALRHNLSNPALLRELSNAFVAIDRLESAEKLLRRSLA 1048          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A6H5KT48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT48_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.030e-21
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   16 LGLRLRLGSLLMGQGKLEAAR------------QVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFM-TAAIDGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            L + +RLGSL    G++E A+                 AV  +C   + R  W AP P      WLG G A LRLE WQ+AE ALQ A+R+D   P  WG+LALLLL M    +  A+  L QAL LGL D +LLRE+    VA+GRL  AE+ LR+SL+
Sbjct: 1161 LRVYMRLGSLYNTLGRIEEAKVGKGAYNSVGPVNFEYAAVVKACFLRACRA-WRAPGP------WLGCGAACLRLEQWQEAEDALQHASRLDCNSPLVWGHLALLLLSMGEGRLQEADRALSQALCLGLADSSLLREIGNCYVAVGRLDAAEEALRKSLA 1313          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A225VBK0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VBK0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.370e-21
Identity = 66/155 (42.58%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    7 AARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAI-----DGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            A RLGL LRLG  L+   + E A  ++L A  +                F     WLGVG+ASLRLE ++ A+ AL  A R+D T P  WGYLALL L     +       A+  + QALR  L++P LLREL+ A VA+ RL   E LLRRSL+
Sbjct:  876 ALRLGLYLRLGLALLHSSQFETADAIFLLACNE----------------FRVASCWLGVGIASLRLEKYERAQIALAEANRLDSTNPDVWGYLALLALTTHTTVVVRDEKDAQQFVSQALRHNLSNPGLLRELSNAFVAIDRLESGEKLLRRSLA 1014          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A329SMS4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SMS4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.380e-21
Identity = 66/155 (42.58%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    7 AARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAID-----GAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            A RLGL L+LG  L+   + E A   +L A  +                F     WLGVG+A LRLE W+ AE AL  A R+D + P  WGY ALL L    ++       A+  + QALR  L++PALLREL+ A VA+ RL  AE LLRRSL+
Sbjct:  937 ALRLGLYLQLGLALLHSSQFETAEATFLLACDE----------------FRIASCWLGVGIACLRLERWERAEMALAEANRLDSSNPDVWGYRALLSLTSHTSVSVRDEKDAQQFVSQALRHNLSNPALLRELSNAFVAIDRLESAEKLLRRSLA 1075          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A0P1B2J0_PLAHL (Tetratricopeptide repeat-containing domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2J0_PLAHL)

HSP 1 Score: 99.4 bits (246), Expect = 2.570e-21
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 1
Query:    1 SVAARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFM---TAAIDGAEAM--LRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            S A+RLGL LRLG  L+   + E A  V+L A                   F     WLGVG+A+LRLE W+ A+ AL  A R+D + P  WGYLALL L      +  D  +AM  + +AL   +++PALLREL+ A VA+ RL  AE LLRRSLS
Sbjct:  927 SDASRLGLYLRLGLALLHSSQFEKADAVFLFACDK----------------FRVASCWLGVGIANLRLEKWERAQMALAEANRLDHSNPDVWGYLALLALTAHTSKSTCDEKDAMQFISKALEHNVSNPALLRELSNAFVAIDRLESAERLLRRSLS 1067          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: D8LNE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.620e-21
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = 1
Query:   16 LGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTA-AIDGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            L + +RLGSL    G++E A+  +L A +           W AP P      WLG G A +RLE WQ+AE A+Q A+R+D      WG+LALLLL M    +  A+  L QAL LGL D +LLRE+    VA GRL  AE+ LR+SL+
Sbjct: 1216 LRVYMRLGSLYNTLGRVEEAKACFLRACR----------AWRAPGP------WLGCGAACMRLEQWQEAEDAMQHASRLDCNSSLVWGHLALLLLSMGEDRLQEADRALSQALCLGLADSSLLREIGNCYVAAGRLDAAEEALRKSLA 1347          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: A0A0W8DXD5_PHYNI (Tetratricopeptide repeat protein 18 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DXD5_PHYNI)

HSP 1 Score: 97.4 bits (241), Expect = 1.210e-20
Identity = 64/155 (41.29%), Postives = 83/155 (53.55%), Query Frame = 1
Query:    7 AARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPAPFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLLFMTAAI-----DGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSLS 456
            A R GL LRLG  L+   + E A   +L    +                F     WLGVG+A LRLE W+ A+ AL  A R+D + P  WGYLAL  L   A++       A+  + QA+R  L++PALLREL+ A VA+ RL  AE LLRRSL+
Sbjct:  934 ALRFGLYLRLGLALLHSSQFETAETTFLLGCDE----------------FRLASCWLGVGIACLRLERWERAQMALAEANRLDSSNPDVWGYLALHSLTAHASVRVRDEKDAQQFVAQAIRHNLSNPALLRELSNAFVAIDRLESAEKLLRRSLA 1072          
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Match: H3HD72_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HD72_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 6.690e-19
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  172 WLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLL-----FMTAAIDGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRSL 453
            WLGVG+A+LRLE W+ A+ AL  A R+DP+ P  WGYLALL L     F       A+  + QALR  L++PALLREL+ A VA+ RL  AE LLRRSL
Sbjct:  864 WLGVGIATLRLERWERAQMALAEANRLDPSNPDVWGYLALLALTAHTSFSARDEKDAQQFVAQALRHNLSNPALLRELSNAFVAIDRLERAEKLLRRSL 962          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13544.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A662YBH9_9STRA1.330e-2343.95Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6A3NWB4_9STRA4.580e-2343.14Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
G4YFL2_PHYSP1.160e-2243.14Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6H5KT48_9PHAE1.030e-2143.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225VBK0_9STRA1.370e-2142.58Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A329SMS4_9STRA1.380e-2142.58Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A0P1B2J0_PLAHL2.570e-2143.95Tetratricopeptide repeat-containing domain n=1 Tax... [more]
D8LNE3_ECTSI2.620e-2143.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0W8DXD5_PHYNI1.210e-2041.29Tetratricopeptide repeat protein 18 n=8 Tax=Phytop... [more]
H3HD72_PHYRM6.690e-1954.55Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13544contigP-wetherbeei_contig13544:401..997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNE3
PFAMsTPR_16,TPR_19,TPR_8
Model size456
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue4.29e-22
EggNOG OGs2CMXF@1|root,2QSJ2@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_004170.1
Cds size456
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.0552614-CDS-P-wetherbeei_contig13544:400..5321683185990.0552614-CDS-P-wetherbeei_contig13544:400..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13544 401..532 -
1683185990.0642414-CDS-P-wetherbeei_contig13544:673..9971683185990.0642414-CDS-P-wetherbeei_contig13544:673..997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13544 674..997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13544.1.1prot_P-wetherbeei_contig13544.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13544 401..997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13544.1.1

>prot_P-wetherbeei_contig13544.1.1 ID=prot_P-wetherbeei_contig13544.1.1|Name=mRNA_P-wetherbeei_contig13544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
SVAARLGLRLRLGSLLMGQGKLEAARQVYLDAVKDSCHPESQRGGWSAPA
PFNSMDAWLGVGVASLRLELWQDAEAALQTATRIDPTRPAPWGYLALLLL
FMTAAIDGAEAMLRQALRLGLTDPALLRELACALVALGRLPPAEDLLRRS
LS
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mRNA from alignment at P-wetherbeei_contig13544:401..997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13544.1.1 ID=mRNA_P-wetherbeei_contig13544.1.1|Name=mRNA_P-wetherbeei_contig13544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=597bp|location=Sequence derived from alignment at P-wetherbeei_contig13544:401..997- (Phaeothamnion wetherbeei SAG_119_79)
TCCGTTGCGGCACGGCTCGGGCTGCGCCTCCGTCTGGGCAGCCTCCTTAT GGGCCAGGGCAAGCTCGAAGCGGCGCGGCAAGTCTATCTCGATGCTGTCA AGGACTCTTGCCACCCGGAATCGCAGCGTGGGGGCTGGAGCGCGCCGGCG CCGTTCAACAGCATGGATGCGTGGCTGGGCGTCGGCGTGGCCAGCCTGCG TCTGGAGCTGTGGCAGGACGCCGAGGCGGCGCTGCAGACGGCCACCCGCA TCGACCCGACCCGGCCGGCTCCCTGGGGCTACCTCGCGCTGCTGCTCCTT TTTATGACGGCTGCTATCGACGGCGTCTCGGAAGCCGGGAACAATGAAAA CGCGGCGGCGGCAGCGGCAGGCGCGGTGGCGACCATCGGCGCTCCAGGCA GCGACAGCGGTGGTGGCAGAGGGGGGGCGGGGCCGGCGGGGCCGGCGGCG CCGCGGCTGCTGGAGGCAGAGGCCATGCTGCGGCAGGCGCTGCGGCTCGG GCTGACCGATCCAGCGCTGCTGCGGGAGCTGGCGTGCGCGCTCGTCGCCC TGGGCCGCCTCCCGCCTGCCGAGGACTTGCTGCGCCGCTCACTGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13544:401..997-

>mRNA_P-wetherbeei_contig13544.1.1 ID=mRNA_P-wetherbeei_contig13544.1.1|Name=mRNA_P-wetherbeei_contig13544.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig13544:401..997- (Phaeothamnion wetherbeei SAG_119_79)
TCCGTTGCGGCACGGCTCGGGCTGCGCCTCCGTCTGGGCAGCCTCCTTAT
GGGCCAGGGCAAGCTCGAAGCGGCGCGGCAAGTCTATCTCGATGCTGTCA
AGGACTCTTGCCACCCGGAATCGCAGCGTGGGGGCTGGAGCGCGCCGGCG
CCGTTCAACAGCATGGATGCGTGGCTGGGCGTCGGCGTGGCCAGCCTGCG
TCTGGAGCTGTGGCAGGACGCCGAGGCGGCGCTGCAGACGGCCACCCGCA
TCGACCCGACCCGGCCGGCTCCCTGGGGCTACCTCGCGCTGCTGCTCCTT
TTTATGACGGCTGCTATCGACGGCGCAGAGGCCATGCTGCGGCAGGCGCT
GCGGCTCGGGCTGACCGATCCAGCGCTGCTGCGGGAGCTGGCGTGCGCGC
TCGTCGCCCTGGGCCGCCTCCCGCCTGCCGAGGACTTGCTGCGCCGCTCA
CTGTCG
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