mRNA_P-wetherbeei_contig13530.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13530.1.1
Unique NamemRNA_P-wetherbeei_contig13530.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: A0A453J3T1_AEGTS (WLM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453J3T1_AEGTS)

HSP 1 Score: 58.5 bits (140), Expect = 2.120e-9
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            + ++ KP+    + L+ +V  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   13 RALKRKPEEPAARALLNRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLR 75
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BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: UPI001F5D7973 (DNA-dependent metalloprotease WSS1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D7973)

HSP 1 Score: 60.8 bits (146), Expect = 2.840e-9
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFRTH 195
            + ++ KPD    + ++ ++  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R H
Sbjct:   13 RALKRKPDEPSARAILDRIANQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLRPH 77
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BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: A0A446Y5B3_TRITD (WLM domain-containing protein n=15 Tax=Triticeae TaxID=147389 RepID=A0A446Y5B3_TRITD)

HSP 1 Score: 59.7 bits (143), Expect = 6.450e-9
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            + ++ KPD    + L+ ++  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   13 RALKRKPDEPAARALLDRIAKQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLR 75
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: UPI0008448F97 (DNA-dependent metalloprotease WSS1 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI0008448F97)

HSP 1 Score: 58.5 bits (140), Expect = 7.580e-9
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            + ++ KP+    + L+ +V  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   68 RALKRKPEEPAARALLNRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLR 130
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: A0A3B6JR99_WHEAT (WLM domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6JR99_WHEAT)

HSP 1 Score: 58.5 bits (140), Expect = 9.690e-9
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            + ++ KP+    + L+ +V  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   13 RALKRKPEEPAARALLNRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLR 75
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: A0A654EKB6_ARATH (Uncharacterized protein n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A654EKB6_ARATH)

HSP 1 Score: 57.4 bits (137), Expect = 4.960e-8
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            K ++ KP  D  ++++ KV  QV+PI+   KW ++   EF P NPRL G+N NRG ++ LR R
Sbjct:   16 KALKRKPREDEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLR 78
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: M7Z8S1_TRIUA (WLM domain-containing protein n=4 Tax=Triticinae TaxID=1648030 RepID=M7Z8S1_TRIUA)

HSP 1 Score: 57.0 bits (136), Expect = 5.980e-8
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            + ++ KP+    + L  +V  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   13 RALKRKPEEPAARALPDRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLLGLNVNRGVEVKLRLR 75
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: A0A397YBI6_BRACM (WLM domain-containing protein n=2 Tax=Brassica campestris TaxID=3711 RepID=A0A397YBI6_BRACM)

HSP 1 Score: 55.1 bits (131), Expect = 6.040e-8
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            K ++ KP  +  ++++ KV  QV+PI+   KW ++   EF P NPRL G+N NRG  + LR R
Sbjct:   13 KALKKKPKEEEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLGVNVNRGVHVKLRLR 75
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: UPI00053B32E6 (DNA-dependent metalloprotease WSS1-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B32E6)

HSP 1 Score: 57.0 bits (136), Expect = 6.770e-8
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            K ++ K  AD   +++ KV  QV+PI+   KW ++   EF PKNPRL G+N NRG ++ LR R
Sbjct:   13 KALKKKTRADEATKILEKVANQVQPIMTRRKWRVKLLSEFCPKNPRLLGVNVNRGVQVKLRLR 75
[Close]
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Match: R0GPN8_9BRAS (Uncharacterized protein n=2 Tax=Capsella rubella TaxID=81985 RepID=R0GPN8_9BRAS)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-7
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 KVMEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNANRGQKLFLRFR 189
            K ++ KP  D  ++++ K+  QV+PI+   KW ++   EF P NPRL G+N NRG ++ LR R
Sbjct:   13 KALKKKPRGDEARKILEKIANQVQPIMNRRKWRVKLLSEFCPTNPRLLGVNVNRGVQVKLRLR 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13530.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A453J3T1_AEGTS2.120e-941.27WLM domain-containing protein n=1 Tax=Aegilops tau... [more]
UPI001F5D79732.840e-940.00DNA-dependent metalloprotease WSS1-like n=1 Tax=Lo... [more]
A0A446Y5B3_TRITD6.450e-941.27WLM domain-containing protein n=15 Tax=Triticeae T... [more]
UPI0008448F977.580e-941.27DNA-dependent metalloprotease WSS1 n=1 Tax=Aegilop... [more]
A0A3B6JR99_WHEAT9.690e-941.27WLM domain-containing protein n=1 Tax=Triticum aes... [more]
A0A654EKB6_ARATH4.960e-842.86Uncharacterized protein n=2 Tax=Arabidopsis thalia... [more]
M7Z8S1_TRIUA5.980e-841.27WLM domain-containing protein n=4 Tax=Triticinae T... [more]
A0A397YBI6_BRACM6.040e-841.27WLM domain-containing protein n=2 Tax=Brassica cam... [more]
UPI00053B32E66.770e-844.44DNA-dependent metalloprotease WSS1-like n=3 Tax=Ca... [more]
R0GPN8_9BRAS1.270e-741.27Uncharacterized protein n=2 Tax=Capsella rubella T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13530contigP-wetherbeei_contig13530:1348..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36080.S2JSY5
PFAMsWLM,zf-RanBP
Model size195
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.25e-11
EggNOG OGsKOG1558@1|root,KOG1558@2759|Eukaryota,39VIX@33154|Opisthokonta,3NW7M@4751|Fungi,1GX5E@112252|Fungi incertae sedis
DescriptionWLM domain
Cds size189
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.6666656-UTR-P-wetherbeei_contig13530:1347..13531683185989.6666656-UTR-P-wetherbeei_contig13530:1347..1353Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13530 1348..1353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.6766691-CDS-P-wetherbeei_contig13530:1353..14191683185989.6766691-CDS-P-wetherbeei_contig13530:1353..1419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13530 1354..1419 +
1683185989.6858497-CDS-P-wetherbeei_contig13530:1570..16931683185989.6858497-CDS-P-wetherbeei_contig13530:1570..1693Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13530 1571..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13530.1.1prot_P-wetherbeei_contig13530.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13530 1354..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13530.1.1

>prot_P-wetherbeei_contig13530.1.1 ID=prot_P-wetherbeei_contig13530.1.1|Name=mRNA_P-wetherbeei_contig13530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MEHKPDADVMKELMAKVCAQVKPIVLAHKWIIRECVEFQPKNPRLYGMNA
NRGQKLFLRFRTH
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mRNA from alignment at P-wetherbeei_contig13530:1348..1693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13530.1.1 ID=mRNA_P-wetherbeei_contig13530.1.1|Name=mRNA_P-wetherbeei_contig13530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=346bp|location=Sequence derived from alignment at P-wetherbeei_contig13530:1348..1693+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGATGGAGCACAAGCCGGACGCCGACGTGATGAAGGAGCTGATGGC
CAAAGTGTGTGCACAGGTGAAGGTAAGGAGGAAGGCGGTCTCAGAATCGT
TAACTTTCGTTCGGCCCCTTGGCGCCTCGGAAATCGCCGTCTTCCTCCCT
CCCTACATCCCAGATCTCACCATATTTTTCGCCTTCCCTTGCGTCCCGGA
GCTCACTTAATTTCCTTTTTCAGCCCATCGTACTCGCTCACAAGTGGATC
ATTCGAGAGTGCGTGGAGTTTCAGCCGAAGAACCCGAGGCTTTACGGGAT
GAACGCAAACAGGGGGCAAAAGCTCTTCCTCCGCTTTCGAACACAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13530:1348..1693+

>mRNA_P-wetherbeei_contig13530.1.1 ID=mRNA_P-wetherbeei_contig13530.1.1|Name=mRNA_P-wetherbeei_contig13530.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig13530:1348..1693+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCACAAGCCGGACGCCGACGTGATGAAGGAGCTGATGGCCAAAGT
GTGTGCACAGGTGAAGCCCATCGTACTCGCTCACAAGTGGATCATTCGAG
AGTGCGTGGAGTTTCAGCCGAAGAACCCGAGGCTTTACGGGATGAACGCA
AACAGGGGGCAAAAGCTCTTCCTCCGCTTTCGAACACAC
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