mRNA_P-wetherbeei_contig1353.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig1353.2.1
Unique Name	mRNA_P-wetherbeei_contig1353.2.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:  481 NCSICLTCFAQQDRCTRITCGHVFHEACVDVWLEAHRTCPLCTVDLDDLA 630
            +CS+CL  + + D   ++TCGHVFH AC+D WL+AHR CP C  DLD LA
Sbjct:  192 SCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLKAHRVCPCCRTDLDKLA 241

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.240e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1

Query:  481 NCSICLTCFAQQDRCTRITCGHVFHEACVDVWLEAHRTCPLCTVDLDDLA 630
            +CS+CL  + + D   ++TCGHVFH AC+D WL AHR CP C  DLD LA
Sbjct:  272 SCSVCLDDYEEGDELLQVTCGHVFHRACIDHWLMAHRVCPCCRTDLDKLA 321

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A4S8J7D7_MUSBA (RING-type E3 ubiquitin transferase n=2 Tax=Musa TaxID=4640 RepID=A0A4S8J7D7_MUSBA)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-8
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1

Query:  463 EDGEGANCSICLTCFAQQDRCTRI-TCGHVFHEACVDVWLEAHRTCPLCTVDLDDLAIA 636
            E GE A CSICL+   + D+   + +CGH FH  CVD WL+AH +CPLC   L D ++A
Sbjct:  143 EAGEEAQCSICLSSLTEGDKVKVLPSCGHTFHVECVDEWLKAHTSCPLCRASLADSSVA 201

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A0E0DB49_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0DB49_9ORYZ)

HSP 1 Score: 62.0 bits (149), Expect = 1.830e-8
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 1

Query:  469 GEGA-NCSICLTCFAQQDR--CTRITCGHVFHEACVDVWLEAHRTCPLCTVDLDDLAIA 636
            G GA  C++CL  FA      C    C HVFH AC+DVWL AH TCP+C  DL D A+A
Sbjct:   68 GHGALKCAVCLAEFADDGEKLCLLPGCCHVFHTACIDVWLAAHVTCPVCRADLADRAVA 126

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A6G1CS14_9ORYZ (RING-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CS14_9ORYZ)

HSP 1 Score: 63.2 bits (152), Expect = 2.070e-8
Identity = 38/108 (35.19%), Postives = 52/108 (48.15%), Query Frame = 1

Query:  337 ATPMMTEACVRRQQLCSPTANLAVNENVAPSSSLVPVSLVGNEDGEGANCSICLTCFAQQDRCTRI--TCGHVFHEACVDVWLEAHRTCPLCTVDLDDLAIAKRLDAA 654
            + P      VRR   C  TA      +  P+ +  P +    E G G  C++CL    Q     R+  +CGH+FH  C+D+WL AHRTCPLC  DL    +  +  AA
Sbjct:   85 SAPAAVRLQVRRCASCGLTAQAI---DALPTFAYEPPTTAEKEGGGGVLCAVCLE-DVQGGETVRMLPSCGHLFHVDCIDMWLHAHRTCPLCRRDLSPRKVTAKASAA 188

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A0D3E6X5_BRAOL (RING-type domain-containing protein n=8 Tax=Brassiceae TaxID=981071 RepID=A0A0D3E6X5_BRAOL)

HSP 1 Score: 64.3 bits (155), Expect = 2.130e-8
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1

Query:  388 PTANLAVNENVAPSSSLVPVSLVGN--EDGEGANCSICLTCFAQQDRCTRI--TCGHVFHEACVDVWLEAHRTCPLCTVDLDDLA 630
            P  N  + + +  S  L P S V N  ED  G  C+ICL  F ++    R+   C HVFH+ C+D WLE+++TCP+C  +LD  A
Sbjct:   77 PPVNPGLEQQIIQSFPLFPFSSVKNLREDKHGLECAICLLEFEEEHVLLRLLTNCYHVFHQECIDRWLESNKTCPVCRRNLDPTA 161

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: UPI000B8CA77C (RING-H2 finger protein ATL29-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA77C)

HSP 1 Score: 64.7 bits (156), Expect = 2.440e-8
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 1

Query:  301 FFSIFKLGDKCLATPMMTEACVRRQQLCS--PTANLAVNENVAPSSSLV----PVSLVGNEDGE--GANCSICLTCFAQQDRCTRIT-CGHVFHEACVDVWLEAHRTCPLCTVDLD 621
            FFSI+    KC     +T   +RR    S   TA+  +N  + P +       P S V     E  G  C+ICL  F   D    +T C HVFH+ C+D+WLE+HRTCP+C  DLD
Sbjct:  120 FFSIYFC--KCFLENAVTAWNIRRSLSGSLVRTASSPINPGLDPKAIQAFPSFPYSSVKEYRREKYGLECAICLCEFTDDDMLRLLTTCYHVFHQECIDLWLESHRTCPVCRGDLD 233

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A0D3D9J9_BRAOL (RING-type domain-containing protein n=9 Tax=Brassiceae TaxID=981071 RepID=A0A0D3D9J9_BRAOL)

HSP 1 Score: 63.9 bits (154), Expect = 3.030e-8
Identity = 32/89 (35.96%), Postives = 52/89 (58.43%), Query Frame = 1

Query:  367 RRQQLCSPTANLAVNENVAPSSSLVPVSLVGN--EDGEGANCSICLTCFAQQDRCTRI--TCGHVFHEACVDVWLEAHRTCPLCTVDLD 621
            +++    P  N  +  ++  S  L P S V +  ED +G  C+ICL  F ++    R+  TC HVFH+ C+D WL++++TCP+C  +LD
Sbjct:   75 QQENASQPPVNPGLEPHIIQSFPLFPFSSVKDLREDNQGLECAICLLEFEEEHVLLRLLTTCYHVFHQECIDRWLDSNKTCPVCRRNLD 163

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: ATL30_ARATH (RING-H2 finger protein ATL30 n=6 Tax=Arabidopsis TaxID=3701 RepID=ATL30_ARATH)

HSP 1 Score: 63.9 bits (154), Expect = 3.080e-8
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 1

Query:  370 RQQLCSPTANLAVNENVAPSSSLVPVSLVGN--EDGEGANCSICLTCFAQQDRCTRI--TCGHVFHEACVDVWLEAHRTCPLCTVDLD 621
            +Q+   P  N  +  ++  S  L P S V +  ED  G  C+ICL  F ++    R+  TC HVFH+ C+D WLE+++TCP+C  +LD
Sbjct:   74 QQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLD 161

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BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Match: A0A4U5NQU4_POPAL (RING-type domain-containing protein n=3 Tax=Populus TaxID=3689 RepID=A0A4U5NQU4_POPAL)

HSP 1 Score: 63.2 bits (152), Expect = 5.670e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1

Query:  475 GANCSICLTCFAQQDRCTRIT-CGHVFHEACVDVWLEAHRTCPLCTVDLD 621
            G  C+ICL  F+ +D    +T C HVFH+ C+D+WLE+H+TCP+C  DLD
Sbjct:   98 GLECAICLAEFSDEDLVRLLTVCYHVFHQECIDLWLESHKTCPVCRRDLD 147

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig1353.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G9H7_ECTSI	1.670e-10	56.00	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JXK0_9PHAE	4.240e-10	56.00	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A4S8J7D7_MUSBA	1.300e-8	49.15	RING-type E3 ubiquitin transferase n=2 Tax=Musa Ta...	[more]
A0A0E0DB49_9ORYZ	1.830e-8	52.54	RING-type domain-containing protein n=1 Tax=Oryza ...	[more]
A0A6G1CS14_9ORYZ	2.070e-8	35.19	RING-type domain-containing protein n=1 Tax=Oryza ...	[more]
A0A0D3E6X5_BRAOL	2.130e-8	40.00	RING-type domain-containing protein n=8 Tax=Brassi...	[more]
UPI000B8CA77C	2.440e-8	38.79	RING-H2 finger protein ATL29-like n=1 Tax=Carica p...	[more]
A0A0D3D9J9_BRAOL	3.030e-8	35.96	RING-type domain-containing protein n=9 Tax=Brassi...	[more]
ATL30_ARATH	3.080e-8	38.64	RING-H2 finger protein ATL30 n=6 Tax=Arabidopsis T...	[more]
A0A4U5NQU4_POPAL	5.670e-8	52.00	RING-type domain-containing protein n=3 Tax=Populu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig1353	contig	P-wetherbeei_contig1353:2540..3669 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7G9H7
PFAMs	zf-RING_2
Model size	795
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	signal peptide
Exons	3
Evalue	1.21e-11
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota
Description	ubiquitin-protein transferase activity
Cds size	672
COG category	O

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185989.539584-UTR-P-wetherbeei_contig1353:2539..2578	1683185989.539584-UTR-P-wetherbeei_contig1353:2539..2578	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig1353 2540..2578 -
1683185989.5698013-UTR-P-wetherbeei_contig1353:3363..3368	1683185989.5698013-UTR-P-wetherbeei_contig1353:3363..3368	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig1353 3364..3368 -
1683185989.5792384-UTR-P-wetherbeei_contig1353:3590..3669	1683185989.5792384-UTR-P-wetherbeei_contig1353:3590..3669	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig1353 3591..3669 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185989.550931-CDS-P-wetherbeei_contig1353:2578..2787	1683185989.550931-CDS-P-wetherbeei_contig1353:2578..2787	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig1353 2579..2787 -
1683185989.5605776-CDS-P-wetherbeei_contig1353:2900..3363	1683185989.5605776-CDS-P-wetherbeei_contig1353:2900..3363	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig1353 2901..3363 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig1353.2.1	prot_P-wetherbeei_contig1353.2.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig1353 2579..3363 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig1353:2540..3669-
coding sequence from alignment at P-wetherbeei_contig1353:2540..3669-

protein sequence of mRNA_P-wetherbeei_contig1353.2.1

>prot_P-wetherbeei_contig1353.2.1 ID=prot_P-wetherbeei_contig1353.2.1|Name=mRNA_P-wetherbeei_contig1353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MVAIHDVLILIIMAIIIMSAFVLRRACKKWCPHLLVGEGDYERAIAMSAR
EAQHQRQQQQEQKAGIKPEAREFFSIFKLGDKCLATPMMTEACVRRQQLC
SPTANLAVNENVAPSSSLVPVSLVGNEDGEGANCSICLTCFAQQDRCTRI
TCGHVFHEACVDVWLEAHRTCPLCTVDLDDLAIAKRLDAAERAGESPPAE
VTAATVVRRPIPVLAGHIFPSPV*

mRNA from alignment at P-wetherbeei_contig1353:2540..3669-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig1353.2.1 ID=mRNA_P-wetherbeei_contig1353.2.1|Name=mRNA_P-wetherbeei_contig1353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1130bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:2540..3669- (Phaeothamnion wetherbeei SAG_119_79)
TTTATCAATCCCTCAAACAAGCCGTCCCCGCTAGGTGCCTCGAAGTCGGT
TCCACGTCTTTCTTCGAGCGATCAAAAAGGTGAGAAAAGAGCTGGACCGA
GGAAAGCACGCAACTGCGGTACTGCACTGAGAAACCCCCTTCCTGAAATA
TACTTGTTTCTTGCTCAACCAAGTTTCGTTGTTTAGAACTGAAAAGCATT
GAAACTTCAGGGTTTGCCACTACAAAGCGCCAAGGCCCTCCAAGGATTTC
ATGTGGAACTCTACAACCGTTGTCCACCTCTATCCTCGCTCGTTTCTACA
GGCGGGATGGTTGCGATCCACGATGTACTGATATTGATCATTATGGCAAT
CATAATAATGAGCGCTTTCGTGCTTCGAAGAGCTTGCAAGAAATGGTGTC
CGCACCTGTTGGTCGGCGAAGGCGACTACGAACGCGCAATTGCCATGAGC
GCACGGGAAGCACAACACCAACGCCAGCAGCAGCAAGAGCAAAAGGCAGG
CATCAAACCGGAAGCTCGGGAGTTCTTCTCGATTTTCAAGCTCGGAGACA
AATGCCTGGCAACGCCAATGATGACTGAGGCCTGTGTGAGGAGGCAGCAG
CTTTGCAGTCCAACCGCCAACCTGGCGGTTAACGAGAATGTGGCTCCGTC
GTCCTCCTTGGTCCCAGTGTCTCTTGTCGGGAATGAAGACGGCGAGGGGG
CAAACTGCAGCATTTGCCTCACATGCTTTGCTCAGCAAGATCGATGTACG
AGGATAACCTGCGGACACGGTGAGTAGAAGTCAAAGTGTTCGTGCCCTTC
CAACGGCGCCTTAGCTTTCCCTCTGACCTGTCATACTTTTTCCTCCTTTT
CCCACTTATCCTTTTGCAACTCCGAGGTTTAGTCTTCCACGAGGCCTGCG
TCGACGTCTGGTTGGAAGCCCACCGTACATGTCCGCTCTGTACCGTCGAT
TTGGATGACTTGGCAATCGCCAAACGGCTTGATGCCGCCGAAAGGGCGGG
CGAATCGCCGCCCGCTGAGGTGACAGCGGCGACGGTGGTGAGGCGGCCCA
TACCTGTGCTCGCTGGGCATATTTTCCCCTCGCCTGTCTGATGCCAAAAA
TTTATGTGAATATGAAAAATCCGATCCGTT

Coding sequence (CDS) from alignment at P-wetherbeei_contig1353:2540..3669-

>mRNA_P-wetherbeei_contig1353.2.1 ID=mRNA_P-wetherbeei_contig1353.2.1|Name=mRNA_P-wetherbeei_contig1353.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:2540..3669- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGCGATCCACGATGTACTGATATTGATCATTATGGCAATCATAAT
AATGAGCGCTTTCGTGCTTCGAAGAGCTTGCAAGAAATGGTGTCCGCACC
TGTTGGTCGGCGAAGGCGACTACGAACGCGCAATTGCCATGAGCGCACGG
GAAGCACAACACCAACGCCAGCAGCAGCAAGAGCAAAAGGCAGGCATCAA
ACCGGAAGCTCGGGAGTTCTTCTCGATTTTCAAGCTCGGAGACAAATGCC
TGGCAACGCCAATGATGACTGAGGCCTGTGTGAGGAGGCAGCAGCTTTGC
AGTCCAACCGCCAACCTGGCGGTTAACGAGAATGTGGCTCCGTCGTCCTC
CTTGGTCCCAGTGTCTCTTGTCGGGAATGAAGACGGCGAGGGGGCAAACT
GCAGCATTTGCCTCACATGCTTTGCTCAGCAAGATCGATGTACGAGGATA
ACCTGCGGACACGTCTTCCACGAGGCCTGCGTCGACGTCTGGTTGGAAGC
CCACCGTACATGTCCGCTCTGTACCGTCGATTTGGATGACTTGGCAATCG
CCAAACGGCTTGATGCCGCCGAAAGGGCGGGCGAATCGCCGCCCGCTGAG
GTGACAGCGGCGACGGTGGTGAGGCGGCCCATACCTGTGCTCGCTGGGCA
TATTTTCCCCTCGCCTGTCTGA