mRNA_P-wetherbeei_contig1353.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1353.3.1
Unique NamemRNA_P-wetherbeei_contig1353.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A4W5LK89_9TELE (RING-type domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5LK89_9TELE)

HSP 1 Score: 75.5 bits (184), Expect = 2.560e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  676 TLK-GEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            TLK G+EE    S  C +C+E YR GD +  +TCGH+FH  CI+PW   K+TCP+C  D+
Sbjct:  240 TLKRGDEETKSDSHTCAVCIESYRPGDAVTVLTCGHLFHKACIEPWLLDKRTCPMCKADI 299
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: UPI001FB00434 (E3 ubiquitin-protein ligase RNF128a isoform X1 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI001FB00434)

HSP 1 Score: 73.9 bits (180), Expect = 7.900e-11
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  682 KGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            +G+EE    S  C +C+E YR GD +  +TCGH+FH  CI+PW  +++TCP+C  D+
Sbjct:  253 RGDEETTSDSHMCAVCIESYRAGDVVTVLTCGHIFHKPCIEPWLLERRTCPMCKCDI 309
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A674AEH2_SALTR (RING-type domain-containing protein n=15 Tax=Salmonidae TaxID=8015 RepID=A0A674AEH2_SALTR)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-10
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  676 TLK-GEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            TLK G+EE    S  C +C+E YR GD +  +TCGH+FH  CI+PW   K+TCP+C  D+
Sbjct:  239 TLKRGDEETKLDSHTCAVCIESYRPGDVVTVLTCGHLFHKACIEPWLLDKRTCPMCKADI 298
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A669E7J6_ORENI (RING-type domain-containing protein n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669E7J6_ORENI)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-10
Identity = 26/58 (44.83%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  679 LKGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            LK EE +++SS  C +C+E Y+ GD +  +TC H+FH  CI+PW  +++TCP+C  D+
Sbjct:   72 LKSEETSSDSSM-CAVCIESYKVGDVVTVLTCDHIFHKTCIEPWLLERRTCPMCKCDI 128
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A669B352_ORENI (RING-type domain-containing protein n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669B352_ORENI)

HSP 1 Score: 70.5 bits (171), Expect = 1.460e-10
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  682 KGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            K +EE +  S+ C +C+E Y+ GD +  +TC H+FH  CI+PW  +++TCP+C  D+
Sbjct:   96 KRDEETSSDSSMCAVCIESYKVGDVVTVLTCDHIFHKTCIEPWLLERRTCPMCKCDI 152
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A3Q2VZL3_HAPBU (Ring finger protein 128 n=7 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A3Q2VZL3_HAPBU)

HSP 1 Score: 72.8 bits (177), Expect = 1.750e-10
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:  676 TLK-GEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            TLK G+EE +  S+ C +C+E Y+ GD +  +TC H+FH  CI+PW  +++TCP+C  D+
Sbjct:  236 TLKRGDEETSSDSSMCAVCIESYKVGDVVTVLTCDHIFHKTCIEPWLLERRTCPMCKCDI 295
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BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A669EH45_ORENI (RING-type domain-containing protein n=6 Tax=Oreochromis TaxID=8139 RepID=A0A669EH45_ORENI)

HSP 1 Score: 72.4 bits (176), Expect = 2.330e-10
Identity = 24/57 (42.11%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  682 KGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            +G+EE +  S+ C +C+E Y+ GD +  +TC H+FH  CI+PW  +++TCP+C  D+
Sbjct:  239 RGDEETSSDSSMCAVCIESYKVGDVVTVLTCDHIFHKTCIEPWLLERRTCPMCKCDI 295
[Close]
BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: UPI0018891343 (E3 ubiquitin-protein ligase RNF128-like n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018891343)

HSP 1 Score: 72.4 bits (176), Expect = 2.360e-10
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  688 EEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            +EE A  S  C +C+E YR G+ +  +TCGH+FH  CI+PW  +++TCP+C  D+
Sbjct:  241 DEETASDSHVCAVCIESYRAGEAVTVLTCGHIFHKACIEPWLLERRTCPMCKCDI 295
[Close]
BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: H2V2P1_TAKRU (RING-type domain-containing protein n=3 Tax=Takifugu TaxID=31032 RepID=H2V2P1_TAKRU)

HSP 1 Score: 72.0 bits (175), Expect = 3.140e-10
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  682 KGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            KG+EE       C +C+E Y+ GD +  +TCGH+FH  CI+PW   K+TCP+C  D+
Sbjct:  238 KGDEETNSEFHMCAVCIESYKVGDVVTVLTCGHIFHKTCIEPWLLDKRTCPMCKCDI 294
[Close]
BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Match: A0A2I4CN79_9TELE (E3 ubiquitin-protein ligase RNF128-like n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4CN79_9TELE)

HSP 1 Score: 71.6 bits (174), Expect = 3.910e-10
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  676 TLKGEEEAAESSAACVICLEDYRFGDRLVHITCGHVFHDRCIDPWFSKKKTCPLCFEDL 852
            TLK  +E   S A C +C+E YR GD +  +TC H+FH  CI+PW  +++TCP+C  D+
Sbjct:  234 TLKRGDEVTTSDALCAVCIESYRAGDVVTVLTCEHIFHRGCIEPWLLERRTCPMCKCDI 292
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1353.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4W5LK89_9TELE2.560e-1150.00RING-type domain-containing protein n=1 Tax=Hucho ... [more]
UPI001FB004347.900e-1145.61E3 ubiquitin-protein ligase RNF128a isoform X1 n=3... [more]
A0A674AEH2_SALTR1.100e-1050.00RING-type domain-containing protein n=15 Tax=Salmo... [more]
A0A669E7J6_ORENI1.200e-1044.83RING-type domain-containing protein n=1 Tax=Oreoch... [more]
A0A669B352_ORENI1.460e-1042.11RING-type domain-containing protein n=1 Tax=Oreoch... [more]
A0A3Q2VZL3_HAPBU1.750e-1045.00Ring finger protein 128 n=7 Tax=Pseudocrenilabrina... [more]
A0A669EH45_ORENI2.330e-1042.11RING-type domain-containing protein n=6 Tax=Oreoch... [more]
UPI00188913432.360e-1045.45E3 ubiquitin-protein ligase RNF128-like n=1 Tax=Pu... [more]
H2V2P1_TAKRU3.140e-1045.61RING-type domain-containing protein n=3 Tax=Takifu... [more]
A0A2I4CN79_9TELE3.910e-1045.76E3 ubiquitin-protein ligase RNF128-like n=1 Tax=Au... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1353contigP-wetherbeei_contig1353:3976..5464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog106582.XP_004543543.1
Preferred namernf128
PFAMsPA,zf-RING_2
Model size1181
Max annot lvl33208|Metazoa
KEGG koko:K10629
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.36e-12
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,38I67@33154|Opisthokonta,3BEHT@33208|Metazoa,3CU85@33213|Bilateria,47ZNJ@7711|Chordata,495UI@7742|Vertebrata,49R3X@7898|Actinopterygii
EC2.3.2.27
DescriptionSi dkeyp-86f7.4
Cds size678
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.3720763-UTR-P-wetherbeei_contig1353:3975..42961683185989.3720763-UTR-P-wetherbeei_contig1353:3975..4296Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1353 3976..4296 +
1683185989.4185712-UTR-P-wetherbeei_contig1353:5282..54641683185989.4185712-UTR-P-wetherbeei_contig1353:5282..5464Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1353 5283..5464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.3826969-CDS-P-wetherbeei_contig1353:4296..43951683185989.3826969-CDS-P-wetherbeei_contig1353:4296..4395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 4297..4395 +
1683185989.3993735-CDS-P-wetherbeei_contig1353:4540..49011683185989.3993735-CDS-P-wetherbeei_contig1353:4540..4901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 4541..4901 +
1683185989.4097233-CDS-P-wetherbeei_contig1353:5064..52821683185989.4097233-CDS-P-wetherbeei_contig1353:5064..5282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1353 5065..5282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1353.3.1prot_P-wetherbeei_contig1353.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1353 4297..5282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1353.3.1

>prot_P-wetherbeei_contig1353.3.1 ID=prot_P-wetherbeei_contig1353.3.1|Name=mRNA_P-wetherbeei_contig1353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MSSGEFPLLILLMSALLLLAWGFRLLVEQRCPQVLDVTEQRRLARRRAME
GEEVKHDNGLSPEARASFVVFDLEQSSLPHPIIRQTSLAHRGKGSNAAAA
APLSSVDNINDGNTPGGSTLKGEEEAAESSAACVICLEDYRFGDRLVHIT
CGHVFHDRCIDPWFSKKKTCPLCFEDLERLASELGAAAAADGTGAISAGA
DANAAAAPARPTHGASAHLDVLPSV*
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mRNA from alignment at P-wetherbeei_contig1353:3976..5464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1353.3.1 ID=mRNA_P-wetherbeei_contig1353.3.1|Name=mRNA_P-wetherbeei_contig1353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1489bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:3976..5464+ (Phaeothamnion wetherbeei SAG_119_79)
TTTAGCTGCGTTTTGAAGGCCCTGTTCGCCATCCAGAAAGCTTGGGAGGA
AGCAACGACCTTGCAGAAGCCGTGAATAGCCCCCAATGTGCGCGCGCTAG
AGAACTTGCATTTCGTTCCTTGCCGGGCGTAGAGTAGTAAGACAAGGGAA
GCTGTTGACTGAAAACCGTCGATGCTGTTCTTCAGCTGCCCATAAGAACG
CGCTAACACCGCCGATTCTCCTGCGACTGTTTTCTCAAACCTGCCTAAAG
AACAGGGAGACTCGCCGGTTGCCAAATCCCTGGTCTTCTTAGTACCAAAA
AACCCTGTACACATAGCGACTATGAGCTCTGGAGAATTTCCTCTGCTCAT
TCTCTTGATGAGCGCTCTATTGCTCCTTGCCTGGGGATTTCGTCTTTTGG
TGGAACAAAGATGTCCACAGGTAACTTCTTCCTTTTCTTTGTGTTCAATG
TTTGACTTCTTCACTCTCCAAGTTTTGCTTCCGCTTTGTACCTTAGCGTT
CCCTTTCATTGATTGTGATCGAGTGGAACTTTCTTTCTTTGTTTACTCAA
AACCTTCATTTGCAGGTGCTTGATGTGACCGAACAAAGGCGACTGGCGCG
AAGGCGGGCTATGGAGGGGGAGGAAGTAAAGCACGATAACGGTCTCTCCC
CGGAGGCTCGTGCGTCCTTTGTGGTGTTCGACTTGGAGCAGAGTAGCCTC
CCGCACCCCATCATCCGCCAGACGAGCCTCGCGCATAGGGGAAAGGGATC
GAATGCGGCTGCTGCTGCCCCACTCTCGTCGGTTGACAACATTAATGACG
GGAACACACCCGGCGGCAGCACTTTAAAAGGAGAAGAGGAGGCTGCCGAA
AGCAGCGCAGCATGTGTCATCTGTTTGGAGGATTATAGATTTGGCGACCG
TCTGGTGCACATCACCTGCGGACACGGTGAGAGTTCGTTGAGAGTACATC
CGTTGTCGATACGTGGGGGCGTTGCACCTATCGCAGCCATGGCAGCTGCT
GCTCCTTGCATCCCGGCTGACACTTTTGCTTCCCCCAAATCTTTTCCTTC
TGCCCTCCCGTTCTCTCCTTTTCCCCCGGGTCTCACAAGTCTTCCACGAT
CGCTGCATCGATCCTTGGTTTTCTAAGAAGAAAACCTGCCCCCTCTGCTT
CGAGGACCTCGAACGCTTGGCTTCGGAGCTCGGCGCAGCAGCTGCTGCGG
ATGGAACGGGGGCCATCTCCGCCGGCGCTGACGCCAACGCCGCCGCAGCG
CCGGCGCGACCGACTCACGGAGCCTCGGCGCACCTGGACGTCCTCCCGTC
GGTGTGACAGGGAGAATGCTTACGGGGGTGGGTCCATGGTGATATGGCGG
AGTCCACTGGACGACATTTTTCCTCTGTACGTAGTAGTTTGGAGCTGGTG
CAGCAGTGCATTGTACAGCGTCACTTTTTACTTTCATGGTACCTAGACCC
AATGTAAGCAACATGCCTTTTTCCCCAAAGAAAGCAACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1353:3976..5464+

>mRNA_P-wetherbeei_contig1353.3.1 ID=mRNA_P-wetherbeei_contig1353.3.1|Name=mRNA_P-wetherbeei_contig1353.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig1353:3976..5464+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTCTGGAGAATTTCCTCTGCTCATTCTCTTGATGAGCGCTCTATT
GCTCCTTGCCTGGGGATTTCGTCTTTTGGTGGAACAAAGATGTCCACAGG
TGCTTGATGTGACCGAACAAAGGCGACTGGCGCGAAGGCGGGCTATGGAG
GGGGAGGAAGTAAAGCACGATAACGGTCTCTCCCCGGAGGCTCGTGCGTC
CTTTGTGGTGTTCGACTTGGAGCAGAGTAGCCTCCCGCACCCCATCATCC
GCCAGACGAGCCTCGCGCATAGGGGAAAGGGATCGAATGCGGCTGCTGCT
GCCCCACTCTCGTCGGTTGACAACATTAATGACGGGAACACACCCGGCGG
CAGCACTTTAAAAGGAGAAGAGGAGGCTGCCGAAAGCAGCGCAGCATGTG
TCATCTGTTTGGAGGATTATAGATTTGGCGACCGTCTGGTGCACATCACC
TGCGGACACGTCTTCCACGATCGCTGCATCGATCCTTGGTTTTCTAAGAA
GAAAACCTGCCCCCTCTGCTTCGAGGACCTCGAACGCTTGGCTTCGGAGC
TCGGCGCAGCAGCTGCTGCGGATGGAACGGGGGCCATCTCCGCCGGCGCT
GACGCCAACGCCGCCGCAGCGCCGGCGCGACCGACTCACGGAGCCTCGGC
GCACCTGGACGTCCTCCCGTCGGTGTGA
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