mRNA_P-wetherbeei_contig13528.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13528.2.1
Unique NamemRNA_P-wetherbeei_contig13528.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A1F3YJA7_9PROT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YJA7_9PROT)

HSP 1 Score: 173 bits (438), Expect = 1.100e-51
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M  ++ TI+QAWE RASLSP+SAP  +R AVE VIAGLD G LRV EK GGAWITHQW+KKAVL+SFRL DN VM GGAT+YYDKV SKF S+D   F  GG RVVPPA+ARRGA++AKNVVLM
Sbjct:    1 MDSIKKTIEQAWEGRASLSPASAPNTLRTAVEEVIAGLDCGKLRVAEKAGGAWITHQWIKKAVLLSFRLDDNRVMEGGATRYYDKVSSKFTSFD---FDKGGVRVVPPAMARRGAYIAKNVVLM 121
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A537GEW6_9PROT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537GEW6_9PROT)

HSP 1 Score: 168 bits (426), Expect = 1.510e-51
Identity = 81/117 (69.23%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:   22 IDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            I++AWE RA+LSP++AP  +R+AVE VIAGLDAG +RV EK+GG WITHQWVKKAVL+SFRL DN ++ GGAT+YYDKV +KFA++D + F+ GGFRVVPPA+ARRGA++A+NVVLM
Sbjct:    8 IEEAWERRAALSPANAPRPLREAVEHVIAGLDAGRIRVAEKSGGEWITHQWVKKAVLLSFRLEDNRLIEGGATRYYDKVAAKFAAFDESAFSKGGFRVVPPAMARRGAYIARNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A2I6S6G7_9RHOO (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Aromatoleum pumilum TaxID=2067960 RepID=A0A2I6S6G7_9RHOO)

HSP 1 Score: 171 bits (433), Expect = 6.790e-51
Identity = 88/124 (70.97%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M++LQ  ID A+E RA+LSPSSAPA VRDAVE VIAGLDAGTLRV EK  G W  +QWVKKAVLISFRLADN  M GG+TQY+DKV +KFA Y   +F  GGFRVVPPA+ARRGAF+ +NVV+M
Sbjct:    1 MQELQKIIDDAFEARANLSPSSAPAEVRDAVERVIAGLDAGTLRVAEKRDGEWAVNQWVKKAVLISFRLADNQPMPGGSTQYFDKVPTKFADYTPEQFREGGFRVVPPAVARRGAFIGRNVVMM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: UPI00145972C0 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI00145972C0)

HSP 1 Score: 170 bits (431), Expect = 1.360e-50
Identity = 84/124 (67.74%), Postives = 106/124 (85.48%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M++LQ  ID+A+E+RA+LSPSSAPA +RDAV++VI GLD+G+LRV EK  G W+ +QWVKKAVLISFRLADN VM G ATQY+DKV +KFA Y  A+F  GGFRVVPPA+AR+G+++A+NVVLM
Sbjct:    1 MQELQRIIDEAFENRATLSPSSAPAEIRDAVQTVINGLDSGSLRVAEKRDGLWVVNQWVKKAVLISFRLADNEVMPGAATQYFDKVPTKFADYTPAQFLDGGFRVVPPAVARKGSYIARNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: DAPD_AROAE (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=13 Tax=Rhodocyclales TaxID=206389 RepID=DAPD_AROAE)

HSP 1 Score: 169 bits (429), Expect = 2.730e-50
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M+DLQ  ID A+E+RA+LSPS+APAAVRDAV SVIAGLDAG LRV EK  G W  +QW+KKAVLISFRLADN VM GG  QY+DKV +KF  Y   +F  GGFRVVPPA+ARRG+F+ +NVVLM
Sbjct:    1 MQDLQKIIDDAFENRANLSPSAAPAAVRDAVASVIAGLDAGRLRVAEKIDGNWTVNQWIKKAVLISFRLADNEVMAGGTNQYFDKVPTKFGDYTPEQFREGGFRVVPPAVARRGSFIGRNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A6M4GRH2_9PROT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GRH2_9PROT)

HSP 1 Score: 169 bits (429), Expect = 2.730e-50
Identity = 87/124 (70.16%), Postives = 96/124 (77.42%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M DLQ  ID AWE RA  +P +APA +R AVE+VIA LDAG LRV EK GG WITHQWVKKAVL+SFRL DN +M GG   Y+DKVDSKFA Y  A FAAGG+RVVPPA  R GAF+AKNVVLM
Sbjct:    1 MTDLQQAIDGAWEKRAEFNPDNAPADLRKAVEAVIAQLDAGKLRVSEKQGGEWITHQWVKKAVLLSFRLRDNEIMQGGYAHYFDKVDSKFARYTQADFAAGGYRVVPPAAVRHGAFIAKNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: UPI0019C86359 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019C86359)

HSP 1 Score: 166 bits (419), Expect = 4.650e-50
Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M +LQ T+D AWE RA ++P+SAPAA+++AV  VIA LDAG LRV EK GG WI HQW+KKAVL+SFRL DN +M GG T Y+DKVDSKF+++  A FA GG+RVVPPA  R GAF+AKNVVLM
Sbjct:    1 MSELQRTLDAAWEGRAEVTPASAPAALKEAVAHVIAELDAGRLRVAEKKGGDWIVHQWIKKAVLLSFRLRDNGIMQGGFTHYFDKVDSKFSNFTQADFATGGYRVVPPATVRSGAFIAKNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A556AS02_9BURK (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=2 Tax=Alcaligenaceae TaxID=506 RepID=A0A556AS02_9BURK)

HSP 1 Score: 167 bits (423), Expect = 2.190e-49
Identity = 85/123 (69.11%), Postives = 99/123 (80.49%), Query Frame = 1 
Query:    4 RDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            +DLQNTI+QAWEDRA LSPS+APAAVR+AV  VI  LDAGTLRV EK G  W  HQWVKKAVL+SFRL DN VM     Q++DKV  KF+ +D A F AGG+RVVPPA+ARRG+++AKNVVLM
Sbjct:    3 QDLQNTIEQAWEDRADLSPSAAPAAVREAVAHVIDALDAGTLRVAEKAGEDWTVHQWVKKAVLLSFRLHDNEVMGQAPLQFFDKVPVKFSGFDDAAFRAGGYRVVPPAVARRGSYIAKNVVLM 125
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: A0A537C9H4_9PROT (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537C9H4_9PROT)

HSP 1 Score: 166 bits (421), Expect = 4.390e-49
Identity = 81/124 (65.32%), Postives = 99/124 (79.84%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M   +  I++ WE R +LSPS+AP  +RDAVE VIA LDAG LRV EK GG W+THQW+KKAVL+SFRL DN V+ GGAT+YYDKV +KFA++D   F  GGFRVVPPA+ARRGA++A+NVVLM
Sbjct:    1 MDHAKEIIEEGWEKRTALSPSTAPRRLRDAVEQVIAALDAGRLRVAEKAGGEWLTHQWIKKAVLLSFRLEDNRVLEGGATRYYDKVAAKFAAFDEGAFLKGGFRVVPPAMARRGAYIARNVVLM 124
[Close]
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Match: UPI00135B42E3 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Cognatazoarcus halotolerans TaxID=2686016 RepID=UPI00135B42E3)

HSP 1 Score: 166 bits (420), Expect = 6.050e-49
Identity = 81/124 (65.32%), Postives = 102/124 (82.26%), Query Frame = 1 
Query:    1 MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTGGAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAAGGFRVVPPAIARRGAFVAKNVVLM 372
            M+D+Q  ID+A+E+RASLSP+ APA +R+AV  VIAGLDAG LRV EK  G WIT+QW+KKAVLISFRL DN +M+GG+T Y+DKV +KF  Y + +F  GGFRVVPPA+AR+G+F+ KNVVLM
Sbjct:    1 MQDIQKIIDEAFENRASLSPTHAPAQIREAVAEVIAGLDAGRLRVAEKRDGTWITNQWIKKAVLISFRLQDNQLMSGGSTNYFDKVATKFGDYTSEQFQQGGFRVVPPAVARKGSFIGKNVVLM 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13528.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YJA7_9PROT1.100e-5171.772,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
A0A537GEW6_9PROT1.510e-5169.232,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
A0A2I6S6G7_9RHOO6.790e-5170.972,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
UPI00145972C01.360e-5067.742,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
DAPD_AROAE2.730e-5069.352,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
A0A6M4GRH2_9PROT2.730e-5070.162,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
UPI0019C863594.650e-5066.132,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
A0A556AS02_9BURK2.190e-4969.112,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
A0A537C9H4_9PROT4.390e-4965.322,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]
UPI00135B42E36.050e-4965.322,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-suc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13528contigP-wetherbeei_contig13528:1457..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog76114.ebA6386
Preferred namedapD
PFAMsHexapep,Hexapep_2,THDPS_N_2
Model size372
Max annot lvl206389|Rhodocyclales
KEGG rclassRC00004,RC01136
KEGG koko:K00674
KEGG ReactionR04365
KEGG Pathwayko00300,ko01100,ko01120,ko01230,map00300,map01100,map01120,map01230
KEGG ModuleM00016
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.47e-51
EggNOG OGsCOG2171@1|root,COG2171@2|Bacteria,1MU0Y@1224|Proteobacteria,2VHUX@28216|Betaproteobacteria,2KUZC@206389|Rhodocyclales
EC2.3.1.117
DescriptionBelongs to the transferase hexapeptide repeat family
Cds size372
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.3368976-CDS-P-wetherbeei_contig13528:1456..18281683185989.3368976-CDS-P-wetherbeei_contig13528:1456..1828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13528 1457..1828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13528.2.1prot_P-wetherbeei_contig13528.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13528 1457..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13528.2.1

>prot_P-wetherbeei_contig13528.2.1 ID=prot_P-wetherbeei_contig13528.2.1|Name=mRNA_P-wetherbeei_contig13528.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MRDLQNTIDQAWEDRASLSPSSAPAAVRDAVESVIAGLDAGTLRVCEKTG
GAWITHQWVKKAVLISFRLADNHVMTGGATQYYDKVDSKFASYDAARFAA
GGFRVVPPAIARRGAFVAKNVVLM
back to top

mRNA from alignment at P-wetherbeei_contig13528:1457..1828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13528.2.1 ID=mRNA_P-wetherbeei_contig13528.2.1|Name=mRNA_P-wetherbeei_contig13528.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13528:1457..1828+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGACCTACAAAACACCATCGACCAGGCGTGGGAAGACCGCGCCAG
CCTGAGCCCTTCATCGGCACCCGCTGCCGTTCGCGATGCCGTTGAGAGCG
TGATCGCGGGTCTCGATGCGGGTACCCTCCGAGTCTGCGAGAAGACCGGC
GGAGCCTGGATCACCCACCAATGGGTCAAGAAGGCGGTGCTGATCTCCTT
TCGCCTCGCCGACAACCATGTCATGACCGGTGGCGCGACGCAGTACTACG
ACAAGGTCGACAGCAAGTTCGCCAGCTATGACGCGGCCAGGTTCGCGGCC
GGGGGGTTCAGGGTGGTCCCACCCGCGATCGCCAGGCGCGGCGCATTCGT
CGCCAAGAACGTCGTGCTGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13528:1457..1828+

>mRNA_P-wetherbeei_contig13528.2.1 ID=mRNA_P-wetherbeei_contig13528.2.1|Name=mRNA_P-wetherbeei_contig13528.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13528:1457..1828+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGACCTACAAAACACCATCGACCAGGCGTGGGAAGACCGCGCCAG
CCTGAGCCCTTCATCGGCACCCGCTGCCGTTCGCGATGCCGTTGAGAGCG
TGATCGCGGGTCTCGATGCGGGTACCCTCCGAGTCTGCGAGAAGACCGGC
GGAGCCTGGATCACCCACCAATGGGTCAAGAAGGCGGTGCTGATCTCCTT
TCGCCTCGCCGACAACCATGTCATGACCGGTGGCGCGACGCAGTACTACG
ACAAGGTCGACAGCAAGTTCGCCAGCTATGACGCGGCCAGGTTCGCGGCC
GGGGGGTTCAGGGTGGTCCCACCCGCGATCGCCAGGCGCGGCGCATTCGT
CGCCAAGAACGTCGTGCTGATG
back to top