mRNA_P-wetherbeei_contig13526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13526.1.1
Unique NamemRNA_P-wetherbeei_contig13526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.920e-12
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 NLQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRADEGASQQQRE 333
            N +LD REKRK+F +EN   D+K      KKR+++++EL  R+RP+ RFS S  EH++ I ++     +  RIE L+  R  G  T+ E  E++   +RR +E ASQ+ RE
Sbjct:  376 NHRLDEREKRKKFVIENNLLDYKKPPPGSKKRSREDRELVARLRPFARFS-SAKEHDELIDNLIAAKKIRARIETLQMYRQNGITTIAEGIEFDKARQRRQEELASQKHRE 485          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A7S3M4W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4W2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-11
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 NLQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRR 300
            N +L  R +RK F +E    D K     DK+RTK+E++L GR+R + RF  S  EHE  +  + +   L  +IE  +  R MG RTL++A++YEA+ R R
Sbjct:   47 NHKLQERNRRKEFVIERGLIDFKLQQQQDKRRTKEERDLVGRLRVFARFQ-SKEEHEALVEGLLRAGKLRQQIELYRTYRQMGVRTLEQAKQYEANKRLR 145          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A1Y1HU23_KLENI (Histone acetyltransferase complex component n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HU23_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 6.480e-11
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 NLQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRADEGASQQQRE 333
            N +LD R +RK F +E    + K   A+D+KRT++E+EL  R R + RF+ +  E ++ +  +     + +RI++LK  R+MG RT+ EA +YE+D ++R  E   ++QRE
Sbjct:  367 NHRLDERRRRKEFILERGLLNLKKQQALDRKRTREERELYNRARVFARFT-TQEEIDELVSGLLAERRIRDRIDELKEYRAMGIRTMAEAADYESDKKKRDVEAQQRKQRE 476          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: UPI001CFD951F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD951F)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-10
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    4 LQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRR 300
             +L  RE+R++FA+E +  D K + A++KKRTK EKEL  + RP+ RF  +  E E+ +  I Q   +  RI++LK  R+ G  +L +   Y+AD ++R
Sbjct:  386 FRLSERERRRKFAIERQLVDWKKISAIEKKRTKMEKELYQKYRPFARFLDNQDEFEEFMTGIIQETKIRTRIQELKEYRANGLTSLSQCATYDADNKKR 484          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A5B8MW70_9CHLO (Transcriptional adapter n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MW70_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 4.130e-10
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    7 QLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRADE 309
            Q +  EKRK F ++  F + +    ++K+RT++EKE+   MR + RF  +P EH++ +G I +   L  RI +LK  R MG  TL EAE YE D RRR  E
Sbjct:  332 QRERYEKRK-FVLDRHFLNVRKQQLVEKRRTREEKEIHACMRVFARFQ-TPDEHDELVGGICKEQRLRKRISELKEYRKMGILTLAEAEFYEQDKRRRESE 430          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: D8RME1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RME1_SELML)

HSP 1 Score: 64.7 bits (156), Expect = 7.620e-10
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   10 LDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRADE 309
            L+ R++RK F +E    + K   A+D+K+TK+EKEL  R R + R+  S  EHE  +  +     +  RIE+L+  RS GC TL E E Y  D R+R+ E
Sbjct:  291 LEERKRRKDFILERGLLNVKRQQALDRKKTKEEKELIQRSRVFLRYHSSE-EHEALLAGLTAEIKIRQRIEELQEYRSAGCHTLAEGEYYAMDKRKRSAE 389          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A2K1IJ37_PHYPA (Transcriptional adapter n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IJ37_PHYPA)

HSP 1 Score: 60.1 bits (144), Expect = 3.240e-8
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   10 LDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRADE 309
            LD R++RK F +E    + K   A+D+KRTK+E+EL  R R + R+  S  EHE  +  +     L  RIE+L+  R  GC  + +AE Y ++ ++R  E
Sbjct:  370 LDERKRRKDFILERGLLNIKRQQALDRKRTKEERELYNRSRVFMRYH-SAEEHEALLNGLIAERKLRQRIEELQEYRMNGCHIMADAEVYCSEKKKRETE 468          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A371DR04_9APHY (SWIRM-domain-containing protein n=4 Tax=Polyporaceae TaxID=5317 RepID=A0A371DR04_9APHY)

HSP 1 Score: 58.2 bits (139), Expect = 1.540e-7
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 LDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRA 303
            +D R + K    +    ++K + A DKKR+K+EK++  R+RP+ R   +  + EQ   DI   + L  RI++L+  R++G RT  + E+YEAD ++RA
Sbjct:  323 VDKRLEAKSIMFDRGLLNYKQMQAADKKRSKEEKDILHRLRPFARLQ-TAEDFEQFQADILYEHMLRKRIKELQLYRTLGLRTPADIEKYEADFQKRA 419          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A099NUP0_PICKU (Transcriptional adapter 2 n=1 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099NUP0_PICKU)

HSP 1 Score: 57.8 bits (138), Expect = 2.000e-7
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 NLQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEAD 288
            N +L  R +RKR  + +   D+K   A+DKKR+K+EKEL  +++P+ R   S  + ++   DI +   + NRI QL+  R  G  TL+E E+YE +
Sbjct:  209 NEKLTLRAERKRLMINDNLLDYKTNNAIDKKRSKEEKELYNKIKPFARIMSSN-DFQEFSDDILKEFKIRNRINQLQNWRKNGILTLEEGEQYERE 303          
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Match: A0A507FK16_9FUNG (ER membrane protein complex subunit 4 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FK16_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 2.860e-7
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 NLQLDAREKRKRFAME-NKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFSGSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRRA 303
            N  LD R +RK+F  + N   D + +  ++KKRTKDE++L  R+R + +F  S A+ E+    + +   L  RI +L+  R MGC T  EA EYE +  +R+
Sbjct:  394 NTTLDRRIERKKFLKDRNLTHDFRKLQNIEKKRTKDERDLLNRIRVFAKFQSS-ADFEEFTEGLMREQKLRQRIAELQEFRRMGCTTFTEAAEYEKEKYQRS 494          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL08_9PHAE3.920e-1240.54Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3M4W2_9STRA1.280e-1140.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1Y1HU23_KLENI6.480e-1136.94Histone acetyltransferase complex component n=1 Ta... [more]
UPI001CFD951F1.260e-1038.38uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A5B8MW70_9CHLO4.130e-1041.58Transcriptional adapter n=1 Tax=Chloropicon primus... [more]
D8RME1_SELML7.620e-1040.00Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
A0A2K1IJ37_PHYPA3.240e-837.00Transcriptional adapter n=3 Tax=Physcomitrium pate... [more]
A0A371DR04_9APHY1.540e-735.71SWIRM-domain-containing protein n=4 Tax=Polyporace... [more]
A0A099NUP0_PICKU2.000e-737.50Transcriptional adapter 2 n=1 Tax=Pichia kudriavze... [more]
A0A507FK16_9FUNG2.860e-737.25ER membrane protein complex subunit 4 n=1 Tax=Chyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13526contigP-wetherbeei_contig13526:72..955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr1785
PFAMsMyb_DNA-binding,ZZ
Model size333
Max annot lvl2836|Bacillariophyta
KEGG koko:K11314
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.19e-13
EggNOG OGsCOG5114@1|root,KOG0457@2759|Eukaryota,2XET0@2836|Bacillariophyta
DescriptionZinc-binding domain, present in Dystrophin, CREB-binding protein.
Cds size333
COG categoryB
BRITEko00000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.2551045-CDS-P-wetherbeei_contig13526:71..2661683185989.2551045-CDS-P-wetherbeei_contig13526:71..266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13526 72..266 +
1683185989.272262-CDS-P-wetherbeei_contig13526:817..9551683185989.272262-CDS-P-wetherbeei_contig13526:817..955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13526 818..955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13526.1.1prot_P-wetherbeei_contig13526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13526 72..955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13526.1.1

>prot_P-wetherbeei_contig13526.1.1 ID=prot_P-wetherbeei_contig13526.1.1|Name=mRNA_P-wetherbeei_contig13526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
NLQLDAREKRKRFAMENKFFDHKHVMAMDKKRTKDEKELAGRMRPYQRFS
GSPAEHEQKIGDIAQMNYLMNRIEQLKRARSMGCRTLQEAEEYEADVRRR
ADEGASQQQRE
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mRNA from alignment at P-wetherbeei_contig13526:72..955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13526.1.1 ID=mRNA_P-wetherbeei_contig13526.1.1|Name=mRNA_P-wetherbeei_contig13526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=884bp|location=Sequence derived from alignment at P-wetherbeei_contig13526:72..955+ (Phaeothamnion wetherbeei SAG_119_79)
AATCTGCAGCTGGACGCGCGCGAGAAGCGTAAGCGGTTCGCCATGGAGAA CAAGTTTTTCGACCACAAGCATGTCATGGCGATGGACAAGAAGCGGACAA AAGATGAGAAGGAGCTCGCTGGACGGATGCGGCCCTACCAGCGCTTCTCG GGGTCGCCGGCGGAGCACGAGCAGAAGATTGGCGACATCGCCCAAGTGAG TAAACGGAGCGAAGCGGGAGTAAAGTAGTCGATGGCGGCGTGCAGCGTTT CATCTGCTGCGGTACCTGCCTAGCTTGCGGAGGCACCTAGTTTGAGTGCA GCATGCCCGGCGGCGGCGGGGCTTTGGGGCTGCGGTGCAAGGTATGACTG GCAAGCAACGACGGCTGGGGGTAGCGGTTCGTATGAGGTGGTAAGACGAC CGCGCCTGGGAAAGAATTGCTGGAGGCTGATGCTACGGCGGAGCAGGACC GGTTATGGCATTGAAAGTGCAAATGCTAGGGAAGCAAGAATTGATGCGGG CCTCTCTCTCAGGCGACAAATGCTAAACCTTACCCCGCAATCCACAGTTC CTCGCGCCGCTCTTTTTAGTACCTTGAAAGGGGAGCGCTCCTTGCGTGCG CATTGAGATATGAAGTTCATGTCGCTGGCGCCCATGGGCAACGCTGCCTG CTCAAGCTGACCGTGCCGCCGCCCGCCGCGACGCGGCTTCACCTGTGTCG TCGCCGTGTTTGTTCCTCATTCCGTTCGTCGATGTTAATGTGGCAGATGA ACTACCTCATGAACCGCATCGAGCAGCTCAAGCGGGCCCGCAGCATGGGC TGCCGCACCCTGCAGGAGGCCGAGGAGTACGAGGCGGACGTGCGTCGGCG CGCTGACGAGGGCGCGTCGCAGCAGCAGCGCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13526:72..955+

>mRNA_P-wetherbeei_contig13526.1.1 ID=mRNA_P-wetherbeei_contig13526.1.1|Name=mRNA_P-wetherbeei_contig13526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig13526:72..955+ (Phaeothamnion wetherbeei SAG_119_79)
AATCTGCAGCTGGACGCGCGCGAGAAGCGTAAGCGGTTCGCCATGGAGAA
CAAGTTTTTCGACCACAAGCATGTCATGGCGATGGACAAGAAGCGGACAA
AAGATGAGAAGGAGCTCGCTGGACGGATGCGGCCCTACCAGCGCTTCTCG
GGGTCGCCGGCGGAGCACGAGCAGAAGATTGGCGACATCGCCCAAATGAA
CTACCTCATGAACCGCATCGAGCAGCTCAAGCGGGCCCGCAGCATGGGCT
GCCGCACCCTGCAGGAGGCCGAGGAGTACGAGGCGGACGTGCGTCGGCGC
GCTGACGAGGGCGCGTCGCAGCAGCAGCGCGAG
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