mRNA_P-wetherbeei_contig1352.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1352.4.1
Unique NamemRNA_P-wetherbeei_contig1352.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1352.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1352contigP-wetherbeei_contig1352:5580..7270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1691
Hectar predicted targeting categoryother localisation
Exons1
Cds size984
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.0569835-UTR-P-wetherbeei_contig1352:5579..60361683185989.0569835-UTR-P-wetherbeei_contig1352:5579..6036Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1352 5580..6036 +
1683185989.075452-UTR-P-wetherbeei_contig1352:7020..72701683185989.075452-UTR-P-wetherbeei_contig1352:7020..7270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1352 7021..7270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185989.0667205-CDS-P-wetherbeei_contig1352:6036..70201683185989.0667205-CDS-P-wetherbeei_contig1352:6036..7020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1352 6037..7020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1352.4.1prot_P-wetherbeei_contig1352.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1352 6037..7020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1352.4.1

>prot_P-wetherbeei_contig1352.4.1 ID=prot_P-wetherbeei_contig1352.4.1|Name=mRNA_P-wetherbeei_contig1352.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=328bp
MGVLRRLFVSNDDGGGGSSGGAQAAGGGVHAGRLPERAPAQQACSGSGAV
SRGGGAGGSSGRGGGSSGSGGAGASSNSGRGNGGGGGGSTAGRVAPATAL
SGLRPRAASLTSANRHLQGGSEAAAAAVTAAAEEQFCVVNRWTMLHVAPQ
ARTEFDAFMLPRRLLVLRGMSAVAVFLGCIEAAFIRVTSAGTAGEAVTTA
LLLLGGGCGVYAGLATPPAVWRRMGLATAALYAYLMAVEMVELARHTVRL
TDHSIADATENSTLLTIRFLVLVLFMLAPFGPAAHCPLLLVGAVEAALTA
LLIVANIFTIERDSIAQDAGEFRFSER*
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mRNA from alignment at P-wetherbeei_contig1352:5580..7270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1352.4.1 ID=mRNA_P-wetherbeei_contig1352.4.1|Name=mRNA_P-wetherbeei_contig1352.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1691bp|location=Sequence derived from alignment at P-wetherbeei_contig1352:5580..7270+ (Phaeothamnion wetherbeei SAG_119_79)
ACTGCCCTTTTCTCCACGAAAGGAGGGCGGAGAGGACCGGTGAAAGCTTG
CTGGCGGCCCCTGCACAACTACTACGCGCTGCGCGGAAAAAGAGGTTCAA
GTTTACTCCTACTTTCCACCCGCACCGGAAAGTGTGTGCGCTTTCTTTAT
CAATTGTGGCCACAAAGAAAACCTCACGAGGCGTTTTGACCAACTGGACG
CTGCAGCACGTTGAGGCCCACGAAGCCTCACAGGGGAAGAGGCCATTTTT
GGGGTATCGAACATCAGCTTAGGGGCATGCCATCCACCAAGGTTCGCCTC
TCTGGGTTGATTAGAGGTGGGACACCGGGAATGCGGCGCGCGTCGGCCTC
TGCATGAGCGAATTACCCCTCTCCACGAGGACGAGCACCGCTGGCGATTG
AAAACTCCCTACCGCGGGGGCCATCCCCGGCCCACCGCCAGGGCGAGTTG
CCGGGGCATGGGCGTGCTGCGCCGCCTGTTCGTCTCGAACGACGATGGCG
GTGGCGGCAGCTCCGGAGGAGCCCAGGCTGCTGGAGGCGGCGTCCACGCG
GGGAGGCTGCCGGAGCGGGCGCCTGCGCAGCAAGCCTGCAGCGGCTCGGG
CGCGGTCAGCAGAGGCGGCGGCGCCGGCGGCAGCTCCGGGAGAGGCGGCG
GCAGCTCTGGCAGCGGCGGCGCCGGCGCCAGCTCCAACAGCGGCAGGGGA
AACGGTGGCGGCGGCGGCGGCAGCACTGCAGGGCGCGTTGCGCCGGCGAC
GGCACTGTCCGGACTGCGTCCCCGCGCGGCCTCGCTCACGTCAGCAAACC
GCCACTTGCAGGGCGGTTCCGAGGCGGCGGCGGCGGCGGTGACGGCGGCG
GCGGAAGAGCAGTTTTGCGTCGTCAACCGGTGGACGATGCTGCATGTGGC
TCCGCAGGCACGCACCGAGTTCGACGCCTTCATGCTGCCGCGGCGTTTGC
TGGTGCTGCGCGGCATGTCGGCCGTCGCCGTCTTCCTCGGATGCATCGAG
GCGGCCTTCATCCGAGTGACGTCGGCGGGAACAGCCGGCGAGGCTGTCAC
GACGGCGCTGCTGCTCTTAGGCGGCGGCTGCGGCGTCTACGCCGGGCTGG
CGACGCCACCGGCGGTGTGGCGGCGGATGGGGCTGGCGACGGCGGCGCTC
TACGCATACCTGATGGCCGTGGAGATGGTGGAGCTGGCGCGGCATACGGT
CCGGCTGACGGACCACTCCATCGCCGACGCCACCGAAAACAGTACGCTGC
TGACGATACGCTTCCTGGTCCTGGTGCTCTTCATGCTGGCGCCGTTCGGC
CCGGCGGCGCACTGCCCGTTGCTGCTGGTGGGTGCGGTCGAGGCAGCTCT
GACAGCTCTCCTCATCGTCGCCAACATTTTCACCATTGAAAGGGACTCCA
TCGCGCAGGACGCCGGCGAGTTTCGTTTTTCAGAGCGATGACGCGGGGAG
CAAGGAAAGAAGGAGAAAATGAATAAGGAGAAAGAGTTGGTCGTTCAGAT
GTTGCTCGTCTCCCGGCGCGTTGCATCGTTTAAAAAACATCCTTCATATT
CGCTTGGTCCGAGCGGGCCAGCTGCCTGTAGATGACAGAAAGTCTCACCG
CCCGGCTTGCTCTTGTGCTGGCGGCCTGACCGTTTTTTGTCTTTGCCGTT
TCTTACATTTCATTCCTCTGTTCTCCCTTATCCCTTTTATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1352:5580..7270+

>mRNA_P-wetherbeei_contig1352.4.1 ID=mRNA_P-wetherbeei_contig1352.4.1|Name=mRNA_P-wetherbeei_contig1352.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=984bp|location=Sequence derived from alignment at P-wetherbeei_contig1352:5580..7270+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGTGCTGCGCCGCCTGTTCGTCTCGAACGACGATGGCGGTGGCGG
CAGCTCCGGAGGAGCCCAGGCTGCTGGAGGCGGCGTCCACGCGGGGAGGC
TGCCGGAGCGGGCGCCTGCGCAGCAAGCCTGCAGCGGCTCGGGCGCGGTC
AGCAGAGGCGGCGGCGCCGGCGGCAGCTCCGGGAGAGGCGGCGGCAGCTC
TGGCAGCGGCGGCGCCGGCGCCAGCTCCAACAGCGGCAGGGGAAACGGTG
GCGGCGGCGGCGGCAGCACTGCAGGGCGCGTTGCGCCGGCGACGGCACTG
TCCGGACTGCGTCCCCGCGCGGCCTCGCTCACGTCAGCAAACCGCCACTT
GCAGGGCGGTTCCGAGGCGGCGGCGGCGGCGGTGACGGCGGCGGCGGAAG
AGCAGTTTTGCGTCGTCAACCGGTGGACGATGCTGCATGTGGCTCCGCAG
GCACGCACCGAGTTCGACGCCTTCATGCTGCCGCGGCGTTTGCTGGTGCT
GCGCGGCATGTCGGCCGTCGCCGTCTTCCTCGGATGCATCGAGGCGGCCT
TCATCCGAGTGACGTCGGCGGGAACAGCCGGCGAGGCTGTCACGACGGCG
CTGCTGCTCTTAGGCGGCGGCTGCGGCGTCTACGCCGGGCTGGCGACGCC
ACCGGCGGTGTGGCGGCGGATGGGGCTGGCGACGGCGGCGCTCTACGCAT
ACCTGATGGCCGTGGAGATGGTGGAGCTGGCGCGGCATACGGTCCGGCTG
ACGGACCACTCCATCGCCGACGCCACCGAAAACAGTACGCTGCTGACGAT
ACGCTTCCTGGTCCTGGTGCTCTTCATGCTGGCGCCGTTCGGCCCGGCGG
CGCACTGCCCGTTGCTGCTGGTGGGTGCGGTCGAGGCAGCTCTGACAGCT
CTCCTCATCGTCGCCAACATTTTCACCATTGAAAGGGACTCCATCGCGCA
GGACGCCGGCGAGTTTCGTTTTTCAGAGCGATGA
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