mRNA_P-wetherbeei_contig1351.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1351.2.1
Unique NamemRNA_P-wetherbeei_contig1351.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1351.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1351contigP-wetherbeei_contig1351:4828..6100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1274
Hectar predicted targeting categoryother localisation
Exons1
Cds size1218
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.6229463-CDS-P-wetherbeei_contig1351:4827..60451683185988.6229463-CDS-P-wetherbeei_contig1351:4827..6045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1351 4828..6045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.6312575-UTR-P-wetherbeei_contig1351:6045..61001683185988.6312575-UTR-P-wetherbeei_contig1351:6045..6100Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1351 6046..6100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1351.2.1prot_P-wetherbeei_contig1351.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1351 4828..6045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1351.2.1

>prot_P-wetherbeei_contig1351.2.1 ID=prot_P-wetherbeei_contig1351.2.1|Name=mRNA_P-wetherbeei_contig1351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=406bp
KRNTVVGKTAAATATPSASNSTAEAAAGGSGKRKRLGSTTLTSKDPKING
AAAKSAGSSTPSEQPLPLSAAAEQSSGNPGVPSEKTTASSRGGAAVPAES
VKKQKKAVAADAEPPSKVPVTVDKAEGAASGSGPGPASRSSGIAAPHVPK
AAARKERDGDPAPVLLLASSAPQRDAAAPSGKSSDHAAPKTAPARRAGKQ
RDAVVDEKQAPSVERSTGGAAAPTAKKTAAVPEAATASREATAAGPPGAV
APAPAASPRATVTAPATKKRIKAAVPAVVAAEPQAAHRATAVTPHGAAVG
DKRAAPNGAGGPGEAEPRTKKKATAAVATAGMSSAAAAVAPVSQNGRAKH
ARRAAGTGKAGAGAEARDACAALPLLGIGKEKAVPAVAAAAPAEKRKKKK
TKEET*
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mRNA from alignment at P-wetherbeei_contig1351:4828..6100+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1351.2.1 ID=mRNA_P-wetherbeei_contig1351.2.1|Name=mRNA_P-wetherbeei_contig1351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1273bp|location=Sequence derived from alignment at P-wetherbeei_contig1351:4828..6100+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAGGAATACTGTGGTGGGAAAGACAGCAGCGGCAACGGCGACGCCCTC
GGCCTCAAACTCTACCGCCGAAGCGGCGGCCGGTGGATCGGGCAAACGAA
AACGATTGGGTTCCACAACTTTGACCTCAAAGGATCCGAAAATCAACGGG
GCCGCGGCGAAGAGCGCAGGCAGCAGCACACCGTCGGAGCAACCTCTGCC
ATTGTCTGCAGCGGCGGAGCAGAGTTCCGGCAACCCTGGGGTGCCAAGCG
AGAAGACAACTGCATCGTCAAGGGGGGGTGCTGCCGTCCCGGCAGAATCG
GTGAAGAAGCAGAAAAAGGCGGTGGCAGCGGATGCGGAGCCGCCATCAAA
AGTGCCTGTCACAGTTGACAAGGCAGAGGGAGCGGCGTCAGGCAGCGGTC
CAGGGCCGGCGTCGAGGAGCAGCGGCATCGCAGCACCGCACGTTCCAAAA
GCAGCCGCGCGGAAAGAGCGGGACGGCGATCCCGCTCCGGTTCTCCTGCT
GGCATCAAGCGCGCCGCAGAGAGACGCGGCAGCACCAAGCGGAAAGAGCA
GCGATCATGCAGCGCCGAAGACGGCGCCCGCAAGACGCGCTGGGAAACAG
CGTGATGCGGTGGTGGACGAAAAGCAGGCGCCATCTGTGGAGAGAAGCAC
GGGTGGCGCGGCTGCGCCGACTGCGAAGAAGACGGCTGCCGTGCCTGAAG
CGGCGACAGCTTCGCGTGAAGCAACGGCGGCAGGTCCGCCTGGAGCGGTG
GCGCCCGCGCCGGCAGCTTCGCCTAGAGCAACCGTGACGGCGCCTGCGAC
GAAGAAAAGAATCAAGGCAGCTGTACCGGCGGTGGTTGCCGCTGAGCCGC
AAGCAGCTCACAGAGCCACTGCAGTGACACCGCATGGCGCGGCTGTCGGC
GACAAGCGCGCCGCGCCCAACGGCGCGGGTGGCCCCGGCGAGGCAGAGCC
TCGAACAAAAAAGAAGGCGACAGCGGCAGTGGCGACCGCCGGCATGTCAT
CAGCGGCGGCGGCAGTGGCCCCGGTGAGCCAGAACGGCCGCGCCAAGCAC
GCGCGTAGGGCGGCGGGGACCGGAAAAGCCGGCGCTGGGGCGGAAGCGAG
AGACGCTTGCGCCGCGCTGCCATTATTGGGAATAGGAAAAGAGAAGGCAG
TGCCGGCAGTCGCCGCCGCCGCGCCAGCGGAGAAGAGAAAGAAGAAGAAA
ACGAAGGAGGAGACGTAGGGGAGAGAATATCAAAGTATAATGACCGTCTG
TCTTATTTGATCATCGTCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1351:4828..6100+

>mRNA_P-wetherbeei_contig1351.2.1 ID=mRNA_P-wetherbeei_contig1351.2.1|Name=mRNA_P-wetherbeei_contig1351.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1218bp|location=Sequence derived from alignment at P-wetherbeei_contig1351:4828..6100+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAGGAATACTGTGGTGGGAAAGACAGCAGCGGCAACGGCGACGCCCTC
GGCCTCAAACTCTACCGCCGAAGCGGCGGCCGGTGGATCGGGCAAACGAA
AACGATTGGGTTCCACAACTTTGACCTCAAAGGATCCGAAAATCAACGGG
GCCGCGGCGAAGAGCGCAGGCAGCAGCACACCGTCGGAGCAACCTCTGCC
ATTGTCTGCAGCGGCGGAGCAGAGTTCCGGCAACCCTGGGGTGCCAAGCG
AGAAGACAACTGCATCGTCAAGGGGGGGTGCTGCCGTCCCGGCAGAATCG
GTGAAGAAGCAGAAAAAGGCGGTGGCAGCGGATGCGGAGCCGCCATCAAA
AGTGCCTGTCACAGTTGACAAGGCAGAGGGAGCGGCGTCAGGCAGCGGTC
CAGGGCCGGCGTCGAGGAGCAGCGGCATCGCAGCACCGCACGTTCCAAAA
GCAGCCGCGCGGAAAGAGCGGGACGGCGATCCCGCTCCGGTTCTCCTGCT
GGCATCAAGCGCGCCGCAGAGAGACGCGGCAGCACCAAGCGGAAAGAGCA
GCGATCATGCAGCGCCGAAGACGGCGCCCGCAAGACGCGCTGGGAAACAG
CGTGATGCGGTGGTGGACGAAAAGCAGGCGCCATCTGTGGAGAGAAGCAC
GGGTGGCGCGGCTGCGCCGACTGCGAAGAAGACGGCTGCCGTGCCTGAAG
CGGCGACAGCTTCGCGTGAAGCAACGGCGGCAGGTCCGCCTGGAGCGGTG
GCGCCCGCGCCGGCAGCTTCGCCTAGAGCAACCGTGACGGCGCCTGCGAC
GAAGAAAAGAATCAAGGCAGCTGTACCGGCGGTGGTTGCCGCTGAGCCGC
AAGCAGCTCACAGAGCCACTGCAGTGACACCGCATGGCGCGGCTGTCGGC
GACAAGCGCGCCGCGCCCAACGGCGCGGGTGGCCCCGGCGAGGCAGAGCC
TCGAACAAAAAAGAAGGCGACAGCGGCAGTGGCGACCGCCGGCATGTCAT
CAGCGGCGGCGGCAGTGGCCCCGGTGAGCCAGAACGGCCGCGCCAAGCAC
GCGCGTAGGGCGGCGGGGACCGGAAAAGCCGGCGCTGGGGCGGAAGCGAG
AGACGCTTGCGCCGCGCTGCCATTATTGGGAATAGGAAAAGAGAAGGCAG
TGCCGGCAGTCGCCGCCGCCGCGCCAGCGGAGAAGAGAAAGAAGAAGAAA
ACGAAGGAGGAGACGTAG
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