mRNA_P-wetherbeei_contig13508.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A353LPQ1_9PROT (Chemotaxis protein CheW n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPQ1_9PROT) HSP 1 Score: 115 bits (288), Expect = 6.480e-31 Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 31 GNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
G ++VTMIV QLFG+PVL+VHDVF+P+KLAHVPMA PEVAGVLNLRGRIVTAIDLR RLG+ P D QVMAV
Sbjct: 16 GKDGGQNFVTMIVADQLFGVPVLDVHDVFIPTKLAHVPMAAPEVAGVLNLRGRIVTAIDLRCRLGYPPLDDGVQVMAV 93
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A285TGF7_9HYPH (CheW protein n=2 Tax=Stappia TaxID=152161 RepID=A0A285TGF7_9HYPH) HSP 1 Score: 105 bits (262), Expect = 4.890e-27 Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 13 NEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
N+ G T YVT+I+GGQLFG+P+ +VHDVFVP + VP+A PEVAGVLNLRGRIVTAID+R+RL RD AQVMAV
Sbjct: 4 NDNLAAGIDDTIQYVTVIIGGQLFGLPISQVHDVFVPESVTRVPLAAPEVAGVLNLRGRIVTAIDMRKRLHLPARDANAQVMAV 87
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A2D9RKA8_9PROT (Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RKA8_9PROT) HSP 1 Score: 104 bits (259), Expect = 1.180e-26 Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 40 ATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
++S+Y+T+ +GGQLFG V +HDVF P+ + VP++PPEVAG+LNLRGRIVTAID R RLG PRDP A +MA+
Sbjct: 2 SSSEYITLYIGGQLFGASVARIHDVFAPTSITPVPLSPPEVAGLLNLRGRIVTAIDTRARLGLPPRDPEADIMAI 76
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI0015EF1F4F (chemotaxis protein CheW n=1 Tax=Chthonobacter albigriseus TaxID=1683161 RepID=UPI0015EF1F4F) HSP 1 Score: 104 bits (259), Expect = 1.590e-26 Identity = 49/85 (57.65%), Postives = 68/85 (80.00%), Query Frame = 1
Query: 10 DNEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
DN+AR + T+ YVT+++GGQLFG+P+ +VHDVFVP + VP++ PE+AGVLNLRGRIVTAI++R+RLG PR+ + +MAV
Sbjct: 13 DNDAR----SDTTQYVTVVIGGQLFGLPIHKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAINMRRRLGVPPREGKSGIMAV 93
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A838XS12_9HYPH (Chemotaxis protein CheW n=1 Tax=Stappia taiwanensis TaxID=992267 RepID=A0A838XS12_9HYPH) HSP 1 Score: 103 bits (258), Expect = 1.970e-26 Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 13 NEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
N+ G + YVT+++GGQLFG+P+ +VHDVFVP + VP+A PEVAGVLNLRGRIVTAID+R+RL RD AQVMAV
Sbjct: 4 NDNLATGAEDSIQYVTVVIGGQLFGLPISQVHDVFVPDSVTRVPLAAPEVAGVLNLRGRIVTAIDMRKRLHLPDRDENAQVMAV 87
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A4R6R947_9HYPH (Purine-binding chemotaxis protein CheW n=1 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6R947_9HYPH) HSP 1 Score: 103 bits (258), Expect = 2.140e-26 Identity = 46/74 (62.16%), Postives = 62/74 (83.78%), Query Frame = 1
Query: 43 TSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
T+ YVT+++GGQLFG+P+ +VHDVFVP + VP++ PE+AGVLNLRGRIVTAID+R+RLG R+ A+ +MAV
Sbjct: 18 TTQYVTVVIGGQLFGLPISKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAIDMRRRLGLSAREGASTIMAV 91
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A2D7XZH8_9PROT (Chemotaxis protein CheW n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D7XZH8_9PROT) HSP 1 Score: 102 bits (253), Expect = 9.580e-26 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 40 ATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
++ +Y+T+ +GGQLFG V +HDVF P+ + VP+AP EVAG+LNLRGRIVTAID R RLG EPRDP A +MA+
Sbjct: 2 SSQEYITLWIGGQLFGASVARIHDVFAPTSITPVPLAPREVAGLLNLRGRIVTAIDARSRLGLEPRDPDASIMAI 76
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: A0A363TY35_9BRAD (Chemotaxis protein CheW n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TY35_9BRAD) HSP 1 Score: 101 bits (251), Expect = 2.080e-25 Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 34 NTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
N ++YVT+++GGQLFG+P+ V DVF+P +L VP+A PE+AGVLNLRGRIVTAID+R+RLG PR+ A MAV
Sbjct: 9 NEYLTEYVTVMIGGQLFGLPISRVQDVFMPDRLTRVPLAAPEIAGVLNLRGRIVTAIDMRRRLGLPPREDARPPMAV 85
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI0009496254 (chemotaxis protein CheW n=2 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=UPI0009496254) HSP 1 Score: 100 bits (249), Expect = 5.170e-25 Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 13 NEARMLGNTATSD---YVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
N N A +D YVT+++GGQLFG+P+ +VHDVFVP + VP++ PE+AGVLNLRGRIVTAI++R+RLG PR+ + +MAV
Sbjct: 7 NATGTAANEALTDSIQYVTVLIGGQLFGLPIHKVHDVFVPESMTRVPLSAPEIAGVLNLRGRIVTAINMRRRLGLPPREGNSSIMAV 93
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Match: UPI00184CD500 (Chemotaxis protein CheW n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=UPI00184CD500) HSP 1 Score: 100 bits (249), Expect = 5.730e-25 Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 16 EARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAPPEVAGVLNLRGRIVTAIDLRQRLGFEPRDPAAQVMAV 264
EA+ G+ T +VT+++GGQLFG+P+ +VHDVFVP + VP++ PEVAGVLNLRGRIVTAID+R+RL P + QVMAV
Sbjct: 8 EAKTAGDGETIQFVTVVIGGQLFGLPISQVHDVFVPESVTRVPLSAPEVAGVLNLRGRIVTAIDMRRRLHLPPNEEK-QVMAV 89 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13508.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13508.2.1 >prot_P-wetherbeei_contig13508.2.1 ID=prot_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp MQTDNEARMLGNTATSDYVTMIVGGQLFGIPVLEVHDVFVPSKLAHVPMAback to top mRNA from alignment at P-wetherbeei_contig13508:1569..1832+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13508.2.1 ID=mRNA_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13508:1569..1832+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13508:1569..1832+ >mRNA_P-wetherbeei_contig13508.2.1 ID=mRNA_P-wetherbeei_contig13508.2.1|Name=mRNA_P-wetherbeei_contig13508.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig13508:1569..1832+ (Phaeothamnion wetherbeei SAG_119_79)back to top |