mRNA_P-wetherbeei_contig13505.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13505.1.1
Unique NamemRNA_P-wetherbeei_contig13505.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A835YYR0_9STRA (GAF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 9.350e-37
Identity = 97/198 (48.99%), Postives = 115/198 (58.08%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQR-GQLAARIDNLLRAAAAAVGAEAATLLIFDTDSEDAPAGSGDSSDSGGADPA-------SMGIAGRAAASSRPARLLPGSGGDERSPAVLCVPVLGRGGRVIAVLQAVGKR 570
            GISTMAAAALGNLVSD+ GVGLGGVVE WA ++GLPDPGLSRAQM L   R A H GCAIG+TIGCL+GMFPLLLLP       K+R  +  A +D ++  A   +  E  TL I D D +         S   G D           G  GR A   +P  L      D  + +VLC+PV     +V AV+QAVGKR
Sbjct:  116 GISTMAAAALGNLVSDLAGVGLGGVVEGWAAKIGLPDPGLSRAQMNLRSVRTAGHIGCAIGVTIGCLLGMFPLLLLPSPEALEEKKRIEKTVALVDVVMHEATDFLDCEGVTLFIADHDQQKLW------SQLRGYDSIRDLTLSFDEGPVGRVAREGKPLNLP----ADAATKSVLCMPVTDSRHKVRAVVQAVGKR 303          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A6H5J9W0_9PHAE (GAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J9W0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.140e-32
Identity = 90/201 (44.78%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHS-KQRGQLAARIDNLLRAAAAAVGAEAATLLIFDTDSEDAPA---GSGDSSDSGGADPASMGIAGRAAASS-----RPARLLPGSGGDERSPAVLCVPVLGRGGRVIAVLQAVGKRTS 576
            GISTMAAAALGN +SD+ GVGLGGV+E+ A RLGLP   LSRAQM L  TR A   G AIG+ +GCLIGMFPLL +PD     + K++ ++   +D ++  AAA + A +ATL I D + E   A   G+  + ++G      + +A R A S       P  +  G+GG   +P++LC+PV G  G V  V+Q VGK+++
Sbjct:  218 GISTMAAAALGNTISDVAGVGLGGVIENLATRLGLPPSKLSRAQMLLQATRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGA--APSMLCMPVYGADGLVAGVVQVVGKKSN 416          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A7S4JML9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JML9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.440e-25
Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRGQLAARIDNLLRAAAAAVGAEA 327
            GIST+ AAA+GN++SD+ GVGLG  +E +A +L +P P L++AQ QL   RFA   GCAIG+TIGC+IGMFPLL +   +    K+   + +    ++  A   +GAEA
Sbjct:   45 GISTLCAAAIGNIISDLAGVGLGAAIEDFASKLNIPRPNLNQAQRQLRSVRFAGQFGCAIGLTIGCIIGMFPLLFIDSRKAEKMKEEAHIESMFYEMVTEAKRLIGAEA 153          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A5J5DCT4_9PERO (Uncharacterized protein (Fragment) n=3 Tax=Etheostoma spectabile TaxID=54343 RepID=A0A5J5DCT4_9PERO)

HSP 1 Score: 99.0 bits (245), Expect = 1.520e-23
Identity = 49/88 (55.68%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRG 264
            GISTMAAAALGNLVSD+ G+GL G VE+ A +LG+  P L+  QM + +T+F+SH G AIG+TIGC++GMFPL  L D + + +   G
Sbjct:   17 GISTMAAAALGNLVSDLAGLGLAGYVEALASKLGMQGPDLTPEQMHMWQTKFSSHMGKAIGVTIGCILGMFPLFFLDDEKEKEAHPCG 104          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: UPI00155F4C03 (transmembrane protein 65 n=1 Tax=Etheostoma cragini TaxID=417921 RepID=UPI00155F4C03)

HSP 1 Score: 99.4 bits (246), Expect = 6.320e-23
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSK 255
            GISTMAAAALGNLVSD+ G+GL G VE+ A +LG+  P L+  QM + +T+F+SH G AIG+TIGC++GMFPL  L D + + ++
Sbjct:   79 GISTMAAAALGNLVSDLAGLGLAGYVEALASKLGMQGPDLTPEQMHMWQTKFSSHMGKAIGVTIGCILGMFPLFFLDDEKEKEAR 163          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: UPI000A2A69C3 (transmembrane protein 65 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A69C3)

HSP 1 Score: 99.0 bits (245), Expect = 2.880e-22
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQR 261
            GISTMAAAALGN+VSD+ G+GL   VE  A +LG   PGLS  QM+LPRTRF ++   A GI IGC+IGMFPLL + D   + S  R
Sbjct:  134 GISTMAAAALGNIVSDVSGIGLAHYVELAANKLGFEGPGLSSKQMELPRTRFVNNVARAFGIVIGCIIGMFPLLFIKDRDDKESTSR 220          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A6P7NUY4_BETSP (transmembrane protein 65 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7NUY4_BETSP)

HSP 1 Score: 98.2 bits (243), Expect = 6.490e-22
Identity = 50/93 (53.76%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRGQLAAR 279
            GISTMAAAALGNLVSD+ G+GL G VE+ A RLG+  P L+  Q+ + +TR +SH G AIG++IGC++GMFPLL L D + + ++   + A+R
Sbjct:  132 GISTMAAAALGNLVSDLAGLGLAGYVEALASRLGMQVPDLTPKQVDMWQTRLSSHMGKAIGVSIGCILGMFPLLFLDDDKEKDAQSGSEAASR 224          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A7S3PD62_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD62_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.880e-22
Identity = 84/221 (38.01%), Postives = 120/221 (54.30%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQR-LGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRGQLAARIDNLLRAAAAAVGAEAATLLIF---DTDSEDAP-------------AGSGDSSDSGGADPASMGIAGRAAAS----------SRP--ARLLPGSGGDERSPAVLCVPVLGRGGRVIAVLQAVGKRTS 576
            GISTM AAA+GN+VSD+ GV LG VVE +  R L LP P LS AQ QL   RFA+  GCA+G+ IGC+IGMFPLL +   + +  K+   + A   +++  A++ +GA    L +    + D+E+A               G+  S +S        GI  RAA +          S P   +    + GDE + ++LCVPVL   G+ IAV+QA+GK ++
Sbjct:  190 GISTMCAAAIGNIVSDVAGVMLGTVVEDFCARYLDLPTPVLSTAQRQLASVRFANQFGCAVGLIIGCIIGMFPLLFIDSNKIQARKREAAMDAIFRDVMDEASSLIGARRTCLYVLCSKEPDNENALRPNSEGKYLYAKYGGTSTSQESARVITLGRGIVSRAALTGESWNIENVLSEPDFVKEEAEAAGDE-AKSMLCVPVLDGEGKTIAVIQALGKMST 409          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: UPI0015A7ECE2 (transmembrane protein 65 isoform X3 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A7ECE2)

HSP 1 Score: 95.9 bits (237), Expect = 8.050e-22
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPD 234
            GISTMAAAALGNLVSD+ G+GL G VE+ A RLG+  P LS  Q+ + +TR +SH G AIG+TIGCL+GMFPL  L D
Sbjct:   53 GISTMAAAALGNLVSDLAGLGLAGYVEALAHRLGMQIPDLSPKQVDMWQTRVSSHMGKAIGVTIGCLLGMFPLFFLGD 130          
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Match: A0A3B3XU04_9TELE (Transmembrane protein 65 n=10 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3B3XU04_9TELE)

HSP 1 Score: 98.2 bits (243), Expect = 8.730e-22
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 GISTMAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFASHAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRG 264
            GISTMAAAALGNLVSD+ G+GL G VE+ A RLG+  P L+  Q  + +TR +SH G AIGITIGC++GMFPLL L D      K+ G
Sbjct:  149 GISTMAAAALGNLVSDLAGLGLAGYVEALASRLGMQVPDLTPKQADMWQTRLSSHMGKAIGITIGCILGMFPLLFLSDDDEGEEKKNG 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13505.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYR0_9STRA9.350e-3748.99GAF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5J9W0_9PHAE5.140e-3244.78GAF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S4JML9_9STRA9.440e-2546.79Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A5J5DCT4_9PERO1.520e-2355.68Uncharacterized protein (Fragment) n=3 Tax=Etheost... [more]
UPI00155F4C036.320e-2356.47transmembrane protein 65 n=1 Tax=Etheostoma cragin... [more]
UPI000A2A69C32.880e-2258.62transmembrane protein 65 n=1 Tax=Exaiptasia diapha... [more]
A0A6P7NUY4_BETSP6.490e-2253.76transmembrane protein 65 n=1 Tax=Betta splendens T... [more]
A0A7S3PD62_9STRA6.880e-2238.01Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI0015A7ECE28.050e-2264.10transmembrane protein 65 isoform X3 n=1 Tax=Anguil... [more]
A0A3B3XU04_9TELE8.730e-2259.09Transmembrane protein 65 n=10 Tax=Cyprinodontoidei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13505contigP-wetherbeei_contig13505:1..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGW4
Preferred nameTMEM65
PFAMsTMEM65
Model size576
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003205,GO:0003231,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0005911,GO:0007275,GO:0007507,GO:0008016,GO:0008150,GO:0014704,GO:0016020,GO:0019866,GO:0023051,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044291,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0051239,GO:0065007,GO:0071944,GO:0072359,GO:1903522,GO:1903779
Exons3
Evalue3.54e-30
EggNOG OGsKOG4619@1|root,KOG4619@2759|Eukaryota
Descriptionregulation of cardiac conduction
Cds size564
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.4159126-UTR-P-wetherbeei_contig13505:0..121683185988.4159126-UTR-P-wetherbeei_contig13505:0..12Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13505 1..12 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185988.4252212-CDS-P-wetherbeei_contig13505:12..2461683185988.4252212-CDS-P-wetherbeei_contig13505:12..246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13505 13..246 +
1683185988.4327717-CDS-P-wetherbeei_contig13505:443..6181683185988.4327717-CDS-P-wetherbeei_contig13505:443..618Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13505 444..618 +
1683185988.4410079-CDS-P-wetherbeei_contig13505:696..8511683185988.4410079-CDS-P-wetherbeei_contig13505:696..851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13505 697..851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13505.1.1prot_P-wetherbeei_contig13505.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13505 13..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13505.1.1

>prot_P-wetherbeei_contig13505.1.1 ID=prot_P-wetherbeei_contig13505.1.1|Name=mRNA_P-wetherbeei_contig13505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MAAAALGNLVSDIFGVGLGGVVESWAQRLGLPDPGLSRAQMQLPRTRFAS
HAGCAIGITIGCLIGMFPLLLLPDARRRHSKQRGQLAARIDNLLRAAAAA
VGAEAATLLIFDTDSEDAPAGSGDSSDSGGADPASMGIAGRAAASSRPAR
LLPGSGGDERSPAVLCVPVLGRGGRVIAVLQAVGKRTS
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mRNA from alignment at P-wetherbeei_contig13505:1..851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13505.1.1 ID=mRNA_P-wetherbeei_contig13505.1.1|Name=mRNA_P-wetherbeei_contig13505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=851bp|location=Sequence derived from alignment at P-wetherbeei_contig13505:1..851+ (Phaeothamnion wetherbeei SAG_119_79)
GGAATATCGACGATGGCAGCGGCGGCCCTGGGCAACCTCGTCTCGGATAT TTTCGGCGTAGGTCTCGGCGGCGTGGTGGAATCGTGGGCGCAGCGCCTCG GGCTGCCGGATCCGGGCCTCTCACGCGCACAAATGCAGCTTCCGCGCACG CGCTTTGCGAGTCATGCCGGGTGCGCCATAGGCATAACCATCGGCTGCCT CATCGGCATGTTTCCGCTGCTGCTGCTGCCGGACGCACGCAGGCGAGTGA AAGGAAACGGGCTTCTGTCTTTGTCCCTGCAGAGACGTGAAGGTCTTCCG GTTTAAGCGGCACCAGACGAAGCGGTAGTGGCTTTCCTGCGTTTCCTGCG GAAAGGGAAAAAGAGTTCTCCGTATCAACCGCCGGCCCTCCGCTTTTCGT GCCTGTCTTTCGCACTTTGCCATTGATTGGTTGCAGTTCGGAGCACAGCA AGCAGAGGGGCCAGCTTGCCGCCCGCATCGACAACCTGCTGCGCGCCGCG GCCGCCGCGGTCGGTGCAGAGGCGGCCACGCTCCTCATATTCGACACCGA TAGCGAGGACGCCCCTGCAGGCAGCGGCGATAGCAGCGACAGCGGCGGCG CTGATCCTGCAAGCATGGGTGCCGCACAACTGGGCGGCGTCGGCGGAATC GTAGCCACGGACGCTGCGGGTGCGGCGGCGCTGCGCCTCGGGGAAGGAAT CGCCGGGCGTGCGGCCGCCAGTTCGCGCCCGGCGCGGCTCTTGCCTGGCT CCGGCGGGGATGAGAGGTCTCCTGCAGTCCTCTGCGTGCCGGTGCTGGGC AGAGGCGGCCGCGTCATTGCCGTCCTGCAGGCCGTCGGAAAGCGCACTAG T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13505:1..851+

>mRNA_P-wetherbeei_contig13505.1.1 ID=mRNA_P-wetherbeei_contig13505.1.1|Name=mRNA_P-wetherbeei_contig13505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig13505:1..851+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGGCGGCCCTGGGCAACCTCGTCTCGGATATTTTCGGCGTAGG
TCTCGGCGGCGTGGTGGAATCGTGGGCGCAGCGCCTCGGGCTGCCGGATC
CGGGCCTCTCACGCGCACAAATGCAGCTTCCGCGCACGCGCTTTGCGAGT
CATGCCGGGTGCGCCATAGGCATAACCATCGGCTGCCTCATCGGCATGTT
TCCGCTGCTGCTGCTGCCGGACGCACGCAGGCGACACAGCAAGCAGAGGG
GCCAGCTTGCCGCCCGCATCGACAACCTGCTGCGCGCCGCGGCCGCCGCG
GTCGGTGCAGAGGCGGCCACGCTCCTCATATTCGACACCGATAGCGAGGA
CGCCCCTGCAGGCAGCGGCGATAGCAGCGACAGCGGCGGCGCTGATCCTG
CAAGCATGGGAATCGCCGGGCGTGCGGCCGCCAGTTCGCGCCCGGCGCGG
CTCTTGCCTGGCTCCGGCGGGGATGAGAGGTCTCCTGCAGTCCTCTGCGT
GCCGGTGCTGGGCAGAGGCGGCCGCGTCATTGCCGTCCTGCAGGCCGTCG
GAAAGCGCACTAGT
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