mRNA_P-wetherbeei_contig135.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig135.6.1
Unique NamemRNA_P-wetherbeei_contig135.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: UPI001C3C3B25 (peptidylprolyl isomerase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C3B25)

HSP 1 Score: 269 bits (687), Expect = 1.240e-90
Identity = 123/148 (83.11%), Postives = 139/148 (93.92%), Query Frame = 1
Query:   28 IETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEEG 471
            +ETSAGEI++ELWPDKAPQTVGNFVGLA+QG+YD  VFHR+I DFMIQGGCP+GTGTGGPGY+F+DEINDEKLV GVLAMANAGPNTNGSQFFI+TAAATPWLDGAHTGFG+V  G ++V+ LGTTPTGPGDRPRETQ +TT+RIEEG
Sbjct:    1 METSAGEIRIELWPDKAPQTVGNFVGLAQQGYYDDLVFHRIIHDFMIQGGCPKGTGTGGPGYDFEDEINDEKLVKGVLAMANAGPNTNGSQFFIITAAATPWLDGAHTGFGRVVDGMDVVETLGTTPTGPGDRPRETQRLTTVRIEEG 148          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: UPI0003B7B625 (peptidylprolyl isomerase n=1 Tax=Patulibacter americanus TaxID=588672 RepID=UPI0003B7B625)

HSP 1 Score: 212 bits (539), Expect = 5.020e-68
Identity = 100/150 (66.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:   19 TAVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            TA I TS G++  EL+   AP+TV NF  LA+ GFYDG +FHRVI DFMIQGGCP GTGTGGPGY F+DEIN+ K+V G LAMANAGPNTNGSQFFIVTA ATPWLDG HT FG+V+GG+++V  +GTT TGPGDRP     I ++ IE+
Sbjct:    3 TATISTSEGDVAFELFDADAPKTVENFKKLAKDGFYDGLIFHRVIPDFMIQGGCPNGTGTGGPGYQFEDEINEHKIVRGTLAMANAGPNTNGSQFFIVTADATPWLDGKHTAFGQVSGGEDVVQKIGTTQTGPGDRPVTPIEIRSVTIED 152          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: A0A538EQV9_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538EQV9_9ACTN)

HSP 1 Score: 210 bits (535), Expect = 2.040e-67
Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:   19 TAVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            TA + T+AG +++EL+ D AP+TVGNF  LA  GFYDG +FHRVI+DFMIQGGCP+GTGTGGPGY F+DEIN  K+V G LAMANAGPNTNGSQFFIVT  A PWLDG HT FG+V  G + VDA+  TPTG GDRP E Q I  + + +
Sbjct:    3 TATLHTTAGPVEVELFDDDAPKTVGNFRQLAGDGFYDGLIFHRVIKDFMIQGGCPEGTGTGGPGYTFEDEINPHKIVRGALAMANAGPNTNGSQFFIVTTEAAPWLDGKHTVFGRVASGMDAVDAIEATPTGAGDRPVEDQRIERVELSD 152          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: UPI00047B54D5 (peptidylprolyl isomerase n=1 Tax=Patulibacter minatonensis TaxID=298163 RepID=UPI00047B54D5)

HSP 1 Score: 209 bits (533), Expect = 4.120e-67
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 1
Query:   19 TAVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIE 465
            TA I TS G++  EL+   AP+TV NF  L+ +GFYDG +FHRVI DFMIQGGCPQGTGTGGPGY F+DEIN+ K+V G LAMANAGPNTNGSQFFIVTA ATPWLDG HT FG+VT G+++V  +GTTPT  GDRP     I +I+IE
Sbjct:    3 TATISTSEGDVVFELFDADAPKTVQNFKDLSGKGFYDGLIFHRVIADFMIQGGCPQGTGTGGPGYEFEDEINEHKIVRGTLAMANAGPNTNGSQFFIVTADATPWLDGKHTAFGQVTAGEDVVQRIGTTPTAAGDRPVTPIEIRSIKIE 151          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: A0A538F6Q5_9ACTN (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F6Q5_9ACTN)

HSP 1 Score: 206 bits (525), Expect = 6.160e-66
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 1
Query:   28 IETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            + T+ G I+LEL+ D AP+TVGNF  LA  GFYDG +FHRVIRDFMIQGGCPQGTGTGGPGY F+DEIND+K+V G LAMANAGPNTNGSQFFIVT  A PWLDG HT FG+V  G + VDA+ + PTG GDRP E   I  + + E
Sbjct:    1 MHTNHGPIRLELFDDDAPKTVGNFRKLAGDGFYDGLIFHRVIRDFMIQGGCPQGTGTGGPGYTFEDEINDQKVVRGALAMANAGPNTNGSQFFIVTTDAAPWLDGKHTVFGRVADGMDAVDAIESQPTGAGDRPVEDVVIERVELAE 147          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: A0A538A0P6_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538A0P6_9ACTN)

HSP 1 Score: 204 bits (520), Expect = 3.920e-65
Identity = 96/149 (64.43%), Postives = 113/149 (75.84%), Query Frame = 1
Query:   22 AVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            A + T+AG + LEL+ D AP+TV NF  LA  GFYDG +FHRVI DFMIQGGCP+GTGTGGPGY F DEIN+ K+V G LAMANAGPNTNGSQFFIVT+ A PWLDG HT FG+V  G + +DA+  TPTGP DRP E Q I  + + +
Sbjct:    4 ATLHTNAGRVTLELFDDDAPKTVENFRKLAGDGFYDGLIFHRVIPDFMIQGGCPEGTGTGGPGYTFDDEINEHKIVRGALAMANAGPNTNGSQFFIVTSEAAPWLDGKHTVFGEVVDGMDAIDAIEGTPTGPSDRPLEPQVIERVELSD 152          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: H0EA10_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Patulibacter medicamentivorans TaxID=1097667 RepID=H0EA10_9ACTN)

HSP 1 Score: 204 bits (519), Expect = 4.730e-65
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   34 TSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            TS G++  EL+   AP+TV NF  LA  GFYDG +FHRVI DFMIQGGCP GTGTGGPGY F+DEIND K+V G LAMANAGPNTNGSQFFIVT  ATPWLDG HT FG+V GG+++V  +GTTPTGP DRP     I +I I +
Sbjct:    3 TSEGDVVFELFDADAPKTVENFKKLANDGFYDGLIFHRVIADFMIQGGCPNGTGTGGPGYEFEDEINDHKIVRGTLAMANAGPNTNGSQFFIVTTDATPWLDGKHTNFGRVVGGEDVVQRIGTTPTGPQDRPVTPIEIRSITITD 147          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: A0A660LCB8_9ACTN (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Solirubrobacter TaxID=207599 RepID=A0A660LCB8_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 4.560e-64
Identity = 98/149 (65.77%), Postives = 113/149 (75.84%), Query Frame = 1
Query:   22 AVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            A + T+ G+I +EL+ + AP+TV NF  LA +GFYDG  FHR+I+DFMIQGGCPQGTGTGGPGY F+DEIN  KLV G LAMANAGPNTNGSQFFIVT  ATPWLDG HT FG+VTGG +IVD L   PT   D+PRE   I  + I E
Sbjct:    4 ATMSTNLGDITIELFDEDAPKTVQNFKDLAAKGFYDGLSFHRIIKDFMIQGGCPQGTGTGGPGYTFEDEINQHKLVRGSLAMANAGPNTNGSQFFIVTLDATPWLDGKHTNFGQVTGGMDIVDKLEALPTDGRDKPREDAKIEKLTITE 152          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: UPI0004029027 (peptidylprolyl isomerase n=1 Tax=Solirubrobacter sp. URHD0082 TaxID=1298857 RepID=UPI0004029027)

HSP 1 Score: 201 bits (511), Expect = 9.180e-64
Identity = 96/149 (64.43%), Postives = 111/149 (74.50%), Query Frame = 1
Query:   22 AVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIEE 468
            A + T+ GEI  EL+ + AP+TVGNF  LAR GFYDG  FHR+I DFMIQGGCP+GTGTGGPGY F+DEIN  K+V G LAMANAGPNTNGSQFFIVT    PWLDG HT FGKVTGG ++VD L + PT   DRPRE   I  + + +
Sbjct:    4 ATMTTNHGEIIFELFDEDAPKTVGNFRKLARDGFYDGLTFHRIISDFMIQGGCPEGTGTGGPGYTFEDEINQHKIVRGALAMANAGPNTNGSQFFIVTVGQAPWLDGKHTVFGKVTGGMDVVDKLESLPTDGRDRPREDARIDKLEVTD 152          
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Match: A0A538CXW4_9ACTN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CXW4_9ACTN)

HSP 1 Score: 200 bits (508), Expect = 2.160e-63
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   28 IETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRVIRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQFFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTITTIRIE 465
            ++T+AG I LEL+ + AP+TV NF  LA +GFYDG +FHRVI+DFM+QGGCPQGTGTGGPGY F+DEIND K+V G LAMANAGPNTNGSQFF+VT  A PWLDG HT FG+VT G ++VD +  TPT   D+P + Q I +I  +
Sbjct:    1 MQTNAGTIGLELFDEDAPKTVANFKKLAGEGFYDGLIFHRVIKDFMVQGGCPQGTGTGGPGYTFEDEINDHKIVRGALAMANAGPNTNGSQFFVVTTEAAPWLDGKHTVFGRVTDGMDVVDTIEGTPTDGRDKPVDDQRIESITFD 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig135.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C3B251.240e-9083.11peptidylprolyl isomerase n=1 Tax=Miltoncostaea oce... [more]
UPI0003B7B6255.020e-6866.67peptidylprolyl isomerase n=1 Tax=Patulibacter amer... [more]
A0A538EQV9_9ACTN2.040e-6765.33Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actino... [more]
UPI00047B54D54.120e-6767.11peptidylprolyl isomerase n=1 Tax=Patulibacter mina... [more]
A0A538F6Q5_9ACTN6.160e-6667.35Peptidyl-prolyl cis-trans isomerase n=2 Tax=Actino... [more]
A0A538A0P6_9ACTN3.920e-6564.43Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actino... [more]
H0EA10_9ACTN4.730e-6566.90Peptidyl-prolyl cis-trans isomerase n=1 Tax=Patuli... [more]
A0A660LCB8_9ACTN4.560e-6465.77Peptidyl-prolyl cis-trans isomerase n=3 Tax=Soliru... [more]
UPI00040290279.180e-6464.43peptidylprolyl isomerase n=1 Tax=Solirubrobacter s... [more]
A0A538CXW4_9ACTN2.160e-6363.70Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig135contigP-wetherbeei_contig135:7479..7952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1122939.ATUD01000001_gene105
PFAMsPro_isomerase
Model size474
Max annot lvl84995|Rubrobacteria
KEGG koko:K03768
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.24e-69
EggNOG OGsCOG0652@1|root,COG0652@2|Bacteria,2IFUE@201174|Actinobacteria,4CQGA@84995|Rubrobacteria
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Cds size474
COG categoryO
BRITEko00000,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.801838-CDS-P-wetherbeei_contig135:7478..79521683185987.801838-CDS-P-wetherbeei_contig135:7478..7952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig135 7479..7952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig135.6.1prot_P-wetherbeei_contig135.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig135 7479..7952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig135.6.1

>prot_P-wetherbeei_contig135.6.1 ID=prot_P-wetherbeei_contig135.6.1|Name=mRNA_P-wetherbeei_contig135.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
DANTSYTAVIETSAGEIQLELWPDKAPQTVGNFVGLARQGFYDGTVFHRV
IRDFMIQGGCPQGTGTGGPGYNFKDEINDEKLVGGVLAMANAGPNTNGSQ
FFIVTAAATPWLDGAHTGFGKVTGGQEIVDALGTTPTGPGDRPRETQTIT
TIRIEEG*
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mRNA from alignment at P-wetherbeei_contig135:7479..7952-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig135.6.1 ID=mRNA_P-wetherbeei_contig135.6.1|Name=mRNA_P-wetherbeei_contig135.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig135:7479..7952- (Phaeothamnion wetherbeei SAG_119_79)
GACGCGAACACCAGCTACACCGCGGTGATCGAGACATCCGCGGGCGAGAT CCAGCTGGAGCTGTGGCCCGACAAGGCCCCTCAGACGGTCGGCAACTTCG TCGGTCTCGCACGCCAGGGCTTCTACGACGGCACGGTCTTCCACCGTGTG ATCCGCGATTTCATGATCCAAGGGGGGTGTCCCCAGGGCACCGGCACGGG TGGCCCCGGGTACAACTTCAAGGACGAGATCAACGACGAGAAGCTGGTGG GCGGCGTTCTCGCGATGGCCAATGCCGGCCCCAACACCAACGGGAGCCAG TTCTTCATCGTCACCGCGGCCGCCACCCCCTGGCTCGACGGCGCCCACAC CGGGTTCGGGAAGGTGACCGGGGGCCAGGAGATCGTGGACGCCCTCGGTA CGACCCCAACCGGTCCTGGCGATCGCCCGCGCGAGACCCAGACGATCACC ACCATCAGGATCGAGGAGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig135:7479..7952-

>mRNA_P-wetherbeei_contig135.6.1 ID=mRNA_P-wetherbeei_contig135.6.1|Name=mRNA_P-wetherbeei_contig135.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig135:7479..7952- (Phaeothamnion wetherbeei SAG_119_79)
GACGCGAACACCAGCTACACCGCGGTGATCGAGACATCCGCGGGCGAGAT
CCAGCTGGAGCTGTGGCCCGACAAGGCCCCTCAGACGGTCGGCAACTTCG
TCGGTCTCGCACGCCAGGGCTTCTACGACGGCACGGTCTTCCACCGTGTG
ATCCGCGATTTCATGATCCAAGGGGGGTGTCCCCAGGGCACCGGCACGGG
TGGCCCCGGGTACAACTTCAAGGACGAGATCAACGACGAGAAGCTGGTGG
GCGGCGTTCTCGCGATGGCCAATGCCGGCCCCAACACCAACGGGAGCCAG
TTCTTCATCGTCACCGCGGCCGCCACCCCCTGGCTCGACGGCGCCCACAC
CGGGTTCGGGAAGGTGACCGGGGGCCAGGAGATCGTGGACGCCCTCGGTA
CGACCCCAACCGGTCCTGGCGATCGCCCGCGCGAGACCCAGACGATCACC
ACCATCAGGATCGAGGAGGGCTGA
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