mRNA_P-wetherbeei_contig13495.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13495.2.1
Unique NamemRNA_P-wetherbeei_contig13495.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A0C9N6W0_9FUNG (Permease (Fragment) n=1 Tax=Mucor ambiguus TaxID=91626 RepID=A0A0C9N6W0_9FUNG)

HSP 1 Score: 142 bits (358), Expect = 1.980e-40
Identity = 89/162 (54.94%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPF--------SSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADRTQ-----TAP---PAPERAHYLRVTHPSATRY------CYLVRLACVRHAASVSPEPGSNSPSNCIA 420
            FTP+NSGQR  PT YRGCWHVVSR FL  YR          SS  T +Y+PKTF  HAA LRQ F HC  F TAASRRSL RVSVP  P+ L+ R +     T P   P  + A  LRVTHPSA  +          RLAC+RHAASV PEPGSNSP   +A
Sbjct:    7 FTPNNSGQRLPPTYYRGCWHVVSRGFLLRYRHSDSSYSIGRSSLATELYDPKTFITHAALLRQAFAHCGRFPTAASRRSLGRVSVPVWPFTLSGRLRIVALLTFPWVIPVLQ-AGCLRVTHPSAANHQESKLSIKSARLACIRHAASVRPEPGSNSPRKFVA 167          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A2M4CU86_ANODA (Hipothetical protein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CU86_ANODA)

HSP 1 Score: 113 bits (283), Expect = 1.400e-29
Identity = 61/93 (65.59%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPF------SSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTPSNSGQRS PT YRGCWHVVSR F   YR        SS   GVYNPK    HAASL Q F HCAIF TAASRRSL RVSVP  P+ L+ R
Sbjct:    7 FTPSNSGQRSHPTYYRGCWHVVSRCFFYHYRHHPSNQVASSRSKGVYNPKAVIPHAASLHQAFAHCAIFPTAASRRSLGRVSVPVWPFALSGR 99          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A372Q0S8_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372Q0S8_9GLOM)

HSP 1 Score: 110 bits (275), Expect = 6.110e-28
Identity = 66/118 (55.93%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPFSSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADRTQTA--PPAPE-----RAHYLRVTHPSATRY 333
            FTP+NSGQR  PT YRGCWHVVSR FL  YR         Y+PKTFF HAA L Q F HC  F TAASRRSL RVSVP  P  L+ R +    P  P      RA   RVTHPSA  +
Sbjct:   31 FTPNNSGQRLPPTYYRGCWHVVSRGFLIRYRQ------EFYDPKTFFTHAALLHQAFAHCGRFPTAASRRSLGRVSVPVWPITLSGRLRIVALPRFPGVIPNYRAGCPRVTHPSAANF 142          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A645DHL4_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645DHL4_9ZZZZ)

HSP 1 Score: 109 bits (273), Expect = 1.470e-27
Identity = 58/95 (61.05%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRS-FLSGYRP-------FSSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTPSNS QRS PT YRGCWHVVSR  F+    P       +SSP   +YN   FF+HAASLRQ F HC IFL AASRRSL R+SVP  PY L+ R
Sbjct:    3 FTPSNSEQRSPPTCYRGCWHVVSRGLFVGSCHPTGIPSHGYSSPTKELYNLSAFFIHAASLRQTFVHCGIFLAAASRRSLGRISVPVWPYTLSGR 97          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: D6S3A2_LACJE (Uncharacterized protein (Fragment) n=1 Tax=Lactobacillus jensenii JV-V16 TaxID=525329 RepID=D6S3A2_LACJE)

HSP 1 Score: 105 bits (263), Expect = 8.150e-27
Identity = 57/95 (60.00%), Postives = 61/95 (64.21%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPF--------SSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTP+ SGQR  PT YRGCWHVVSR FL  YR          SSP T +Y+PKTFF HAA L Q   HC  F TAASRRSL RVSVP  P  L+ R
Sbjct:   13 FTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRRSLGRVSVPMWPISLSTR 107          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: D5GZ90_LACCS (PG1 protein, homology to Homo sapiens n=6 Tax=Lactobacillus TaxID=1578 RepID=D5GZ90_LACCS)

HSP 1 Score: 103 bits (257), Expect = 1.290e-25
Identity = 56/95 (58.95%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPF--------SSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTP+ SGQR  PT YRGCWHVVSR FL  YR          SSP T +Y+PKTFF HAA L Q   HC  F TAASR SL RVSVP  P  L+ R
Sbjct:   37 FTPNKSGQRLPPTYYRGCWHVVSRDFLVDYRQIKASYYLYPSSPTTELYDPKTFFTHAALLHQTCVHCGRFPTAASRMSLGRVSVPMWPISLSTR 131          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: D7UYD2_LISGR (Uncharacterized protein (Fragment) n=1 Tax=Listeria grayi DSM 20601 TaxID=525367 RepID=D7UYD2_LISGR)

HSP 1 Score: 99.4 bits (246), Expect = 3.490e-24
Identity = 56/93 (60.22%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    7 PSNSGQRSLPTSYRGCWHVVSRSFLSGYR--------PFSSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            P   GQR  PT YRGCWHVVSR FL  YR        P SS  T +Y+PKTFF HAA LRQ F HC  F TAASRRSL RVSVP  P  L+ R
Sbjct:   20 PIIPGQRLPPTYYRGCWHVVSRGFLVRYRQGTSSYSYPCSSLTTVLYDPKTFFTHAALLRQTFVHCGRFPTAASRRSLGRVSVPVWPITLSGR 112          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A6I8MG93_9CORY (Uncharacterized protein n=1 Tax=Corynebacterium rouxii TaxID=2719119 RepID=A0A6I8MG93_9CORY)

HSP 1 Score: 99.8 bits (247), Expect = 5.160e-24
Identity = 56/88 (63.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPFSS-PLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTPSNSGQRS PT YRGCWHVVSR FLS YR  S  P      P+    HAASL Q   HCAIF TAASRRSL R+SVP  P  L+ R
Sbjct:   26 FTPSNSGQRSHPTYYRGCWHVVSRCFLSRYRHKSFVPSERGLQPEGRHPHAASLHQACAHCAIFPTAASRRSLGRISVPMWPSTLSGR 113          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A2R5L649_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L649_9ACAR)

HSP 1 Score: 99.4 bits (246), Expect = 5.280e-24
Identity = 53/78 (67.95%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   34 PTSYRGCWHVVSRSFLSGYRPF--SSPLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            PT YRGCWHVVSR F   YR    SS L  VYNPK    HAASL QGFPHCAIF TAASRRSL RVSVP  P  L+ R
Sbjct:    2 PTYYRGCWHVVSRYFFCRYRHLTASSLLKAVYNPKAVIPHAASLHQGFPHCAIFPTAASRRSLGRVSVPVWPVALSGR 79          
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Match: A0A6I8MEX7_9CORY (Uncharacterized protein n=1 Tax=Corynebacterium rouxii TaxID=2719119 RepID=A0A6I8MEX7_9CORY)

HSP 1 Score: 99.8 bits (247), Expect = 5.300e-24
Identity = 56/88 (63.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPFSS-PLTGVYNPKTFFLHAASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADR 261
            FTPSNSGQRS PT YRGCWHVVSR FLS YR  S  P      P+    HAASL Q   HCAIF TAASRRSL R+SVP  P  L+ R
Sbjct:   26 FTPSNSGQRSHPTYYRGCWHVVSRCFLSRYRHKSFVPSERGLQPEGRHPHAASLHQACAHCAIFPTAASRRSLGRISVPMWPSTLSGR 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13495.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9N6W0_9FUNG1.980e-4054.94Permease (Fragment) n=1 Tax=Mucor ambiguus TaxID=9... [more]
A0A2M4CU86_ANODA1.400e-2965.59Hipothetical protein (Fragment) n=1 Tax=Anopheles ... [more]
A0A372Q0S8_9GLOM6.110e-2855.93Uncharacterized protein n=1 Tax=Rhizophagus sp. MU... [more]
A0A645DHL4_9ZZZZ1.470e-2761.05Uncharacterized protein n=1 Tax=bioreactor metagen... [more]
D6S3A2_LACJE8.150e-2760.00Uncharacterized protein (Fragment) n=1 Tax=Lactoba... [more]
D5GZ90_LACCS1.290e-2558.95PG1 protein, homology to Homo sapiens n=6 Tax=Lact... [more]
D7UYD2_LISGR3.490e-2460.22Uncharacterized protein (Fragment) n=1 Tax=Listeri... [more]
A0A6I8MG93_9CORY5.160e-2463.64Uncharacterized protein n=1 Tax=Corynebacterium ro... [more]
A0A2R5L649_9ACAR5.280e-2467.95Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A6I8MEX7_9CORY5.300e-2463.64Uncharacterized protein n=1 Tax=Corynebacterium ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13495contigP-wetherbeei_contig13495:928..1473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog748671.LCRIS_00061
Model size420
Max annot lvl1239|Firmicutes
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.63e-27
EggNOG OGs2DPM9@1|root,332MQ@2|Bacteria,1VGFB@1239|Firmicutes
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.5840628-CDS-P-wetherbeei_contig13495:927..10591683185987.5840628-CDS-P-wetherbeei_contig13495:927..1059Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13495 928..1059 -
1683185987.597331-CDS-P-wetherbeei_contig13495:1135..11891683185987.597331-CDS-P-wetherbeei_contig13495:1135..1189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13495 1136..1189 -
1683185987.6056106-CDS-P-wetherbeei_contig13495:1239..14731683185987.6056106-CDS-P-wetherbeei_contig13495:1239..1473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13495 1240..1473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13495.2.1prot_P-wetherbeei_contig13495.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13495 928..1473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13495.2.1

>prot_P-wetherbeei_contig13495.2.1 ID=prot_P-wetherbeei_contig13495.2.1|Name=mRNA_P-wetherbeei_contig13495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
FTPSNSGQRSLPTSYRGCWHVVSRSFLSGYRPFSSPLTGVYNPKTFFLHA
ASLRQGFPHCAIFLTAASRRSLDRVSVPPLPYQLADRTQTAPPAPERAHY
LRVTHPSATRYCYLVRLACVRHAASVSPEPGSNSPSNCIA
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mRNA from alignment at P-wetherbeei_contig13495:928..1473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13495.2.1 ID=mRNA_P-wetherbeei_contig13495.2.1|Name=mRNA_P-wetherbeei_contig13495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig13495:928..1473- (Phaeothamnion wetherbeei SAG_119_79)
TTTACGCCCAGTAATTCCGGACAACGCTCGCTCCCTACGTCTTACCGCGG CTGCTGGCACGTAGTTAGCCGAAGCTTCCTCAGTGGGTACCGTCCATTCT CTTCCCCACTGACAGGAGTTTACAATCCGAAAACCTTCTTCCTCCACGCG GCGTCGCTGCGTCAGGGTTTCCCCCATTGCGCAATATTCCTCACTGCTGC CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC TCTCAGACCAGTTATCCGTCGTAGCCTTGGTAAGCCATTACCTTACCAAC TAGCTGATAGAACGCAGACTGCTCCTCCCGCCCCGGAAGTTTGACGGCCT CGAGATGCCTCGAAGCCGTATTATGCGGTATTAACGTTCCTTTCGGAACG GTATCCCCCGCAAGAGGGCACATTATCTACGCGTTACTCACCCGTCTGCC ACTAGGTATTGCTACCTCGTTCGACTTGCATGTGTTAGGCACGCCGCCAG CGTTAGTCCTGAGCCAGGATCAAACTCTCCGTCGAATTGTATTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13495:928..1473-

>mRNA_P-wetherbeei_contig13495.2.1 ID=mRNA_P-wetherbeei_contig13495.2.1|Name=mRNA_P-wetherbeei_contig13495.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig13495:928..1473- (Phaeothamnion wetherbeei SAG_119_79)
TTTACGCCCAGTAATTCCGGACAACGCTCGCTCCCTACGTCTTACCGCGG
CTGCTGGCACGTAGTTAGCCGAAGCTTCCTCAGTGGGTACCGTCCATTCT
CTTCCCCACTGACAGGAGTTTACAATCCGAAAACCTTCTTCCTCCACGCG
GCGTCGCTGCGTCAGGGTTTCCCCCATTGCGCAATATTCCTCACTGCTGC
CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCACCATTACCTTACCAAC
TAGCTGATAGAACGCAGACTGCTCCTCCCGCCCCGGAAAGGGCACATTAT
CTACGCGTTACTCACCCGTCTGCCACTAGGTATTGCTACCTCGTTCGACT
TGCATGTGTTAGGCACGCCGCCAGCGTTAGTCCTGAGCCAGGATCAAACT
CTCCGTCGAATTGTATTGCT
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