mRNA_P-wetherbeei_contig1348.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1348.4.1
Unique NamemRNA_P-wetherbeei_contig1348.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1348.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1348contigP-wetherbeei_contig1348:5600..7289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size900
Hectar predicted targeting categoryother localisation
Exons2
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185987.0771687-CDS-P-wetherbeei_contig1348:5599..64631683185987.0771687-CDS-P-wetherbeei_contig1348:5599..6463Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1348 5600..6463 -
1683185987.0851855-CDS-P-wetherbeei_contig1348:7253..72891683185987.0851855-CDS-P-wetherbeei_contig1348:7253..7289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1348 7254..7289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1348.4.1prot_P-wetherbeei_contig1348.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1348 5600..7289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1348.4.1

>prot_P-wetherbeei_contig1348.4.1 ID=prot_P-wetherbeei_contig1348.4.1|Name=mRNA_P-wetherbeei_contig1348.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
SGRPGARGGVGAPRSAAKASAAAPAAAGAASAAEAAGGLPRTAKAQAFSR
ERHAAAAAGAAADGAAAKALALVDEQNIKRMLGLSPKDGGGAAAAAPPRP
SLNGTGGNGAVATAGSGRGGGGGTAAAANYRIAQGPAGVNVGKKAAKGFS
AGRGNGGGGGPAEAEQQASRRPGGLQKAASAPTAAAGIDDRTSALKSMLG
MGSDGSGGCGAGGGSGGGRVAAAAHAGAGKDAATVKAMLGIGVTGAANDA
PAAPPPPPQELAGDGAEEAEPDWPPPPPPPRPQAAAPAAAAGAIGAALAS
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mRNA from alignment at P-wetherbeei_contig1348:5600..7289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1348.4.1 ID=mRNA_P-wetherbeei_contig1348.4.1|Name=mRNA_P-wetherbeei_contig1348.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1690bp|location=Sequence derived from alignment at P-wetherbeei_contig1348:5600..7289- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGACGCCCCGGTGCGCGTGGTGGGGTCGGCGCCGTCAGCGGCTCAGG
CGGGCGACGTCGAGGTGGACGTCGCCGGCTGGGAGTTCACCGAGGCGGCG
GCGCGGCTGGTGGCGCGCTATCAGCAGAGCTTCCCGCAGCTCTTTTCAGC
ACTAGCGTCGGCGCCACACGCGCGTTTCTACGAGGCGACGGACCTGCTGG
GTGCCGGCGGCGTCGACATGGTGGCGGCGGCATCTGAGTGGCTCAAGACG
GCCGAGACTGCCGGCCTGCCGCGCGTGCCGCTGACCACAAAGGCGCTTCC
CCGCGAGGCGGTGCGCGCGGTGGAGCGCGCGGCGGACGTACGGCAGGCAC
TGCTGGTGGCGCGGCAGCTCATAAAGCCGCGTTGCGTCACGGGAGTGCTG
CCACAGAACCTGCTGCGCGCCGACGAGTACACGCCGACGGCAGCGCCACA
AGCGTCGGGCGTCGCGCCGCCGGATTTGGGCGACCGCGTCTTTAACCTCT
GTGCACGCGGCGTCCCGTTCGGGCTGTGGGGCACCGTTGTCGCTTGCCAC
TCGCACTCGGCGTGCGTCGAGGTGGTGTTCGACGAGGAGTTCATCGGCGG
CGGGACGCTGCAGGGCACGTGCAGCAACTACCGCGGCCTGCTGGTGCCGT
GGACGGCGGTAGGGCGGGTGCCGCCGCCGGCCGGGGCGGCAGCGACGGTC
GCTGCCAGCGCCGCCAGCATGGCGGCGGCGGCGGCGGAGGCGAGAAGGAC
CGCCGGAAGCAAGAAGCAGCGGGCGGCGGCTGCCGTCGCAGTGCCGGCGT
TAACGGGGTCTACGGCAGCCAAGAAGCCGCGCTCCGCCGCAAAGGCGTCA
GCAGCAGCACCGGCGGCGGCTGGGGCGGCTTCAGCGGCGGAGGCGGCTGG
AGGGCTGCCAAGAACAGCTAAGGCGCAGGCGTTCAGCCGCGAGCGGCACG
CGGCGGCGGCAGCCGGAGCGGCGGCCGACGGAGCAGCGGCAAAGGCGCTG
GCGCTCGTGGATGAGCAAAACATCAAACGCATGCTGGGGCTTTCCCCGAA
GGATGGCGGCGGCGCAGCAGCAGCAGCCCCGCCAAGGCCCTCTCTCAACG
GCACGGGGGGCAACGGTGCGGTGGCCACCGCCGGCAGCGGCAGAGGAGGC
GGGGGCGGCACTGCTGCCGCCGCCAACTACCGCATTGCGCAGGGCCCCGC
CGGCGTGAACGTCGGCAAGAAAGCAGCGAAGGGCTTCTCGGCAGGCCGCG
GCAACGGCGGTGGCGGCGGTCCGGCCGAGGCGGAGCAGCAGGCCAGCCGA
AGGCCTGGCGGGCTTCAAAAAGCGGCTTCGGCTCCGACAGCGGCAGCCGG
AATCGACGATCGCACGTCGGCCCTCAAGTCCATGCTCGGCATGGGGAGCG
ACGGCAGCGGCGGTTGTGGCGCCGGCGGTGGCAGTGGCGGCGGCCGTGTC
GCGGCGGCGGCACACGCTGGCGCCGGCAAGGACGCGGCGACCGTTAAGGC
GATGCTGGGGATCGGGGTTACCGGAGCGGCGAATGACGCTCCGGCAGCGC
CACCGCCGCCGCCGCAGGAATTAGCGGGCGACGGGGCGGAGGAGGCTGAG
CCCGACTGGCCGCCGCCGCCACCACCGCCCCGGCCGCAAGCGGCAGCTCC
AGCGGCGGCAGCGGGAGCGATAGGCGCTGCTCTGGCTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1348:5600..7289-

>mRNA_P-wetherbeei_contig1348.4.1 ID=mRNA_P-wetherbeei_contig1348.4.1|Name=mRNA_P-wetherbeei_contig1348.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig1348:5600..7289- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGACGCCCCGGTGCGCGTGGTGGGGTCGGCGCCCCGCGCTCCGCCGC
AAAGGCGTCAGCAGCAGCACCGGCGGCGGCTGGGGCGGCTTCAGCGGCGG
AGGCGGCTGGAGGGCTGCCAAGAACAGCTAAGGCGCAGGCGTTCAGCCGC
GAGCGGCACGCGGCGGCGGCAGCCGGAGCGGCGGCCGACGGAGCAGCGGC
AAAGGCGCTGGCGCTCGTGGATGAGCAAAACATCAAACGCATGCTGGGGC
TTTCCCCGAAGGATGGCGGCGGCGCAGCAGCAGCAGCCCCGCCAAGGCCC
TCTCTCAACGGCACGGGGGGCAACGGTGCGGTGGCCACCGCCGGCAGCGG
CAGAGGAGGCGGGGGCGGCACTGCTGCCGCCGCCAACTACCGCATTGCGC
AGGGCCCCGCCGGCGTGAACGTCGGCAAGAAAGCAGCGAAGGGCTTCTCG
GCAGGCCGCGGCAACGGCGGTGGCGGCGGTCCGGCCGAGGCGGAGCAGCA
GGCCAGCCGAAGGCCTGGCGGGCTTCAAAAAGCGGCTTCGGCTCCGACAG
CGGCAGCCGGAATCGACGATCGCACGTCGGCCCTCAAGTCCATGCTCGGC
ATGGGGAGCGACGGCAGCGGCGGTTGTGGCGCCGGCGGTGGCAGTGGCGG
CGGCCGTGTCGCGGCGGCGGCACACGCTGGCGCCGGCAAGGACGCGGCGA
CCGTTAAGGCGATGCTGGGGATCGGGGTTACCGGAGCGGCGAATGACGCT
CCGGCAGCGCCACCGCCGCCGCCGCAGGAATTAGCGGGCGACGGGGCGGA
GGAGGCTGAGCCCGACTGGCCGCCGCCGCCACCACCGCCCCGGCCGCAAG
CGGCAGCTCCAGCGGCGGCAGCGGGAGCGATAGGCGCTGCTCTGGCTTCC
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