mRNA_P-wetherbeei_contig13472.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13472.1.1
Unique NamemRNA_P-wetherbeei_contig13472.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: D7G1D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.240e-41
Identity = 73/145 (50.34%), Postives = 103/145 (71.03%), Query Frame = 1
Query:    4 DEEVELIVDTDGRIPVAGTLDYQFRSFSAAVPAAKDPKE-LQKLVADCEAAFNARAREGQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS 435
            DEE    +D +GR+P AG + + FRS   A+  A  P E L ++V DC+  F+ARA++ +YSTGET+W+QA++ PR  LE LAL +F+ HT  ARF ++ SGAEWWTQV++  DD IG+H+DKDY +E  G+N+HP + TVT +S
Sbjct:   30 DEEETFFLDPEGRVPFAGNVSFDFRSAPNALAEALSPPEVLAQVVKDCQTVFSARAKKLEYSTGETFWIQANAAPRNCLERLALDVFKVHTAGARFNQETSGAEWWTQVIEDADD-IGWHWDKDYGMEARGINVHPCLATVTYLS 173          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A835ZJA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJA8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 7.310e-41
Identity = 74/145 (51.03%), Postives = 101/145 (69.66%), Query Frame = 1
Query:   16 ELIVDTDGRIPVAGTLDYQFRSFSAAVPAAKD---PKELQKLVADCEAAFNARAREGQY--STGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS 435
            EL++D +GR+P AGTLDY FRS++ A+  +      ++LQ+   D  + F  +    +Y  S GETYW+ AD+EPRCALEALA AIF+ HT+ ARF +  SGAEWW QV+  +DD IG+H+DKDYA E +G N+HP + TVT +S
Sbjct:   21 ELLLDDEGRVPFAGTLDYAFRSYTGALKLSGGGGAERDLQRARRDARSVFRVKEAGSEYGLSAGETYWMAADAEPRCALEALAQAIFKHHTRAARFDRAISGAEWWVQVIGGDDD-IGWHWDKDYATEASGFNVHPHLATVTYLS 164          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A4D9D1L4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1L4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 3.970e-39
Identity = 80/153 (52.29%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 EDEEVELIVDTDGRIPV-AGTLDYQFRSFSAAVPA----AKDPKELQKLVADCEAAFNARARE---GQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS 435
            E +E+EL+VD DGR+    G +D+ FRSF AA P     A     L  L+ DC  A  ARA+    G YS GET+++ AD+EP+  LEALAL+IFR HT +A +A+ +SGAEWW QV++ EDD IG HFDKDYALE  G+NI+P + TVT +S
Sbjct:   72 EGKELELLVDGDGRLVFDGGHVDFSFRSFPAAFPCFCTDATSSSVLSTLLHDCRLASTARAQAKAGGDYSEGETFFITADTEPKVQLEALALSIFRAHTTQAAYAEGQSGAEWWVQVLEEEDD-IGLHFDKDYALEAHGLNIYPHLATVTYLS 223          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: K8YX42_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX42_NANGC)

HSP 1 Score: 141 bits (356), Expect = 1.630e-37
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 EDEEVELIVDTDGRIPV-AGTLDYQFRSFSAAVPA----AKDPKELQKLVADCEAAFNARARE---GQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS 435
            E +E+EL+VD DGR+    G +DY FRSF AA P+    A     L  L+ DC  A  ARA+    G YS GET+++ AD++P+  LEALAL+IF  HT +A + +  SGAEWW QV++ EDD IG HFDKDYALE  G+NI+P + TVT +S
Sbjct:   50 EGKELELLVDEDGRLVFDGGHVDYSFRSFPAAFPSFCTDATSSSVLSTLLHDCRVASTARAQAKAGGDYSEGETFFITADTKPKVQLEALALSIFWAHTSQATYTEGHSGAEWWVQVLEEEDD-IGLHFDKDYALEAHGLNIYPHLATVTYLS 201          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: K8YUU4_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUU4_NANGC)

HSP 1 Score: 141 bits (356), Expect = 6.600e-37
Identity = 78/153 (50.98%), Postives = 102/153 (66.67%), Query Frame = 1
Query:    1 EDEEVELIVDTDGRIPV-AGTLDYQFRSFSAAVPA----AKDPKELQKLVADCEAAFNARARE---GQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS 435
            E +E+EL+VD DGR+    G +DY FRSF AA P+    A     L  L+ DC  A  ARA+    G YS GET+++ AD++P+  LEALAL+IF  HT +A + +  SGAEWW QV++ EDD IG HFDKDYALE  G+NI+P + TVT +S
Sbjct:   72 EGKELELLVDEDGRLVFDGGHVDYSFRSFPAAFPSFCTDATSSSVLSTLLHDCRVASTARAQAKAGGDYSEGETFFITADTKPKVQLEALALSIFWAHTSQATYTEGHSGAEWWVQVLEEEDD-IGLHFDKDYALEAHGLNIYPHLATVTYLS 223          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A7S3UH55_OXYMA (Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UH55_OXYMA)

HSP 1 Score: 125 bits (314), Expect = 1.860e-33
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   13 VELIVDTDGRIP-VAGTLDYQFRSFSAAVPAAKDPKELQKLVADCEAAFNARARE-GQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALETA-GVNIHPAIGTVTSVS 435
            +EL  D + RI  V GT+    RSF AA+    D  +  +LV DC A F AR+++ G+YS+G T+WV A S+P   +E LAL+IF EHT+ A+F  + SGAEWWTQV+ + DD IGFH+D+DY LE   G   HP +GTVT +S
Sbjct:    3 LELAFDEENRIAGVTGTVVLGVRSFPAALQL--DDADRDRLVKDCAAVFTARSKKKGKYSSGSTFWVAAGSQPASGVEQLALSIFDEHTKNAQFKAEVSGAEWWTQVI-SSDDEIGFHWDRDYTLEIDHGFCAHPYLGTVTYLS 143          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A7S0NP21_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NP21_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 2.830e-32
Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = 1
Query:   16 ELIVDTDGRIPVAGTLDYQFRSFSAAVPAAKDPKELQKLVADCEAAFNARAREGQ-YSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALET-AGVNIHPAIGTVTSVS 435
            EL +D  GR+ V G+L Y+       +       E+Q L+ DCEA F ARA  G  YS G T+W+ A  +PR +LE LAL +FR HT+ A F    SGAEWWTQV+DA D+ IGFH+D+DY ++   G+ +HP IGTVT +S
Sbjct:   15 ELNMDAAGRLVVGGSLTYETNMREGLLT----HSEVQALLPDCEAVFTARAAGGDGYSAGCTFWMGAADKPRTSLEELALFVFRMHTEHAVFDPATSGAEWWTQVIDANDE-IGFHWDRDYDMQVDQGLLVHPQIGTVTYLS 151          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A7S4BXK0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXK0_CHRCT)

HSP 1 Score: 127 bits (318), Expect = 2.270e-31
Identity = 71/143 (49.65%), Postives = 89/143 (62.24%), Query Frame = 1
Query:   16 ELIVDTDGRIPVAGTLDYQFRSFSAAVPAAKDPKELQKLVADCEAAFNARAREGQ-YSTGETYWVQA-DSEPRCALEALALAIFREHTQEARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALET-AGVNIHPAIGTVTSVS 435
            EL VD +GR+   GT+  Q R     +     P E Q L+ DC   F ARA  G  YS G T+WV A DS P  ALE +AL IFR HT +A F    SGAEWWTQV+DA+DD IGFH+D+DY ++   G+ +HP +GTVT +S
Sbjct:  134 ELDVDEEGRVAYGGTIWLQTRCSDGLIT----PTEAQALLDDCRTVFTARAAGGDGYSAGCTFWVSAQDSAPTTALERMALKIFRMHTADAEFEPSTSGAEWWTQVIDAQDD-IGFHWDRDYDMQADQGILVHPQLGTVTYLS 271          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A7S4JEC4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JEC4_GUITH)

HSP 1 Score: 121 bits (304), Expect = 1.080e-30
Identity = 70/157 (44.59%), Postives = 98/157 (62.42%), Query Frame = 1
Query:    1 EDEEVELIVDTDGRIPVA--------GTLDYQFRSFSAAVPAAKDPKELQKLVADCEAAFNAR-AREGQ-YSTGETYWVQADSEPRCALEALALAIFREHTQE----ARFAKDRSGAEWWTQVVDAEDDGIGFHFDKDYALE-TAGVNIHPAIGTVT 426
            E+EE E+++D  GR+P            L+Y FR+F   + ++K+ KE  +LV  C+ AFNAR  R GQ YSTGET+W+ +D+EPR  LE LA A+F  HTQ       +   +SGAEWWT   +  DD +G H+D+DY LE T+G+ +HP + TVT
Sbjct:    1 EEEEEEMVLDEFGRVPGGILPSNPCYPDLNYDFRNFPKFLDSSKE-KEFNQLVQSCQLAFNARNTRSGQQYSTGETFWIASDTEPRMPLEKLAKAVFEFHTQGLEPGVHYEPSKSGAEWWTLAFEPGDD-VGLHWDRDYELESTSGILVHPHLSTVT 155          
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Match: A0A2D4C7K9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7K9_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 5.120e-30
Identity = 73/150 (48.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    7 EEVELIVDTDGRIP-VAGTLDYQFRSFSAAVPAAKDPKELQKLVADCEAAFNARAREG-QYSTGETYWVQADSEPRCALEALALAIFREHTQEA-RFAKDRSGAEWWTQVVDA---EDDGIGFHFDKDYALETA-GVNIHPAIGTVTSVS 435
            E +EL +D  GR   V G LDY+FRS   A+    D K    LVADCE AF AR  E  +YSTG T+++ A  EPRC LE LA  +F  H ++   +   RSGAEWWT V+DA    +D + FH+D+DY LE    VN+HP IGTVT +S
Sbjct:   70 EPLELELDNFGRPHGVQGLLDYEFRSIHRALRV-PDDKSYLDLVADCEVAFTAREIENAEYSTGSTFFLPATMEPRCLLERLAKDVFEFHAKDVTEYDPARSGAEWWTLVLDAGAEANDDVSFHWDRDYGLEAEYRVNLHPHIGTVTYLS 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13472.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1D6_ECTSI2.240e-4150.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJA8_9STRA7.310e-4151.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D1L4_9STRA3.970e-3952.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YX42_NANGC1.630e-3750.98Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
K8YUU4_NANGC6.600e-3750.98Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S3UH55_OXYMA1.860e-3349.31Hypothetical protein (Fragment) n=1 Tax=Oxyrrhis m... [more]
A0A7S0NP21_9EUKA2.830e-3247.89Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S4BXK0_CHRCT2.270e-3149.65Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4JEC4_GUITH1.080e-3044.59Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A2D4C7K9_PYTIN5.120e-3048.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13472contigP-wetherbeei_contig13472:163..1077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1D6
Model size435
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.68e-42
EggNOG OGs2BVEA@1|root,2S26B@2759|Eukaryota
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.9227192-CDS-P-wetherbeei_contig13472:162..2731683185986.9227192-CDS-P-wetherbeei_contig13472:162..273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13472 163..273 -
1683185986.9307745-CDS-P-wetherbeei_contig13472:534..6631683185986.9307745-CDS-P-wetherbeei_contig13472:534..663Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13472 535..663 -
1683185986.9381902-CDS-P-wetherbeei_contig13472:783..8311683185986.9381902-CDS-P-wetherbeei_contig13472:783..831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13472 784..831 -
1683185986.9456007-CDS-P-wetherbeei_contig13472:930..10771683185986.9456007-CDS-P-wetherbeei_contig13472:930..1077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13472 931..1077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13472.1.1prot_P-wetherbeei_contig13472.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13472 163..1077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13472.1.1

>prot_P-wetherbeei_contig13472.1.1 ID=prot_P-wetherbeei_contig13472.1.1|Name=mRNA_P-wetherbeei_contig13472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
EDEEVELIVDTDGRIPVAGTLDYQFRSFSAAVPAAKDPKELQKLVADCEA
AFNARAREGQYSTGETYWVQADSEPRCALEALALAIFREHTQEARFAKDR
SGAEWWTQVVDAEDDGIGFHFDKDYALETAGVNIHPAIGTVTSVS
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mRNA from alignment at P-wetherbeei_contig13472:163..1077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13472.1.1 ID=mRNA_P-wetherbeei_contig13472.1.1|Name=mRNA_P-wetherbeei_contig13472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig13472:163..1077- (Phaeothamnion wetherbeei SAG_119_79)
GAAGACGAGGAGGTGGAGCTGATTGTGGACACCGATGGCCGAATCCCCGT CGCCGGGACTCTCGACTACCAGTTTCGAAGCTTCTCTGCAGCAGTTCCTG CGGCAAAGGACCCTAAAGAGCTACAAAAACTCGTTGCCGATTGTGAGGTG AGGAAAACATGCAAACCAGCGCTTGCACCAGCCCGGGCTCATTACACTTA GCAGAGCGGCCTCGCCGAACACGTCATCTTCATCGCAACCATACAGGCGG CGTTCAATGCCCGCGCTCGCGAGGGACAATACAGCACAGGGGAGGTGAGG ATCACTCTCTTTTTTATTTTATTTTCCGTATTGCGCGTCTCCCTCCCGCC ACCAGGACTCTAACCGTCAACCCGCCGCGTCTAGCTCCTTTCTATGGTTC TTTCGGCGCGGTAGACGTATTGGGTCCAGGCCGACAGCGAGCCGCGTTGC GCGCTGGAGGCGCTCGCCTTGGCCATCTTTCGGGAACATACTCAGGAGGC GCGTTTCGCCAAAGACCGCTCCGGCGCAGAATGGTGGACCCAGGTGAGGT GCCCGCCTGCGTTTGCATTCGCTAGTCTGAAACACGCCTCTCAACAGGCT GCATTTCGGTCCATTAGTCTACTTTTTCCCGCCGATTCTTCTGCCTATGC CATGCGTCCTTCACCTATCGGTTCCTGAAGCGAGTTCATTGAGGCGGTGT CAGGATCTTTTCCCCCCGTCGCCTCCTGTCTTGACCGCTGGCGTCCCCGT ACACTCGCTCCTGCACTCCCTATATCGGGCTCGGACCGGACTCTCCCGAA ACAGGTTGTGGACGCGGAGGATGACGGAATCGGCTTCCACTTCGACAAGG ACTACGCCCTCGAGACGGCCGGCGTCAACATTCACCCGGCGATCGGCACT GTCACGTCAGTTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13472:163..1077-

>mRNA_P-wetherbeei_contig13472.1.1 ID=mRNA_P-wetherbeei_contig13472.1.1|Name=mRNA_P-wetherbeei_contig13472.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig13472:163..1077- (Phaeothamnion wetherbeei SAG_119_79)
GAAGACGAGGAGGTGGAGCTGATTGTGGACACCGATGGCCGAATCCCCGT
CGCCGGGACTCTCGACTACCAGTTTCGAAGCTTCTCTGCAGCAGTTCCTG
CGGCAAAGGACCCTAAAGAGCTACAAAAACTCGTTGCCGATTGTGAGGCG
GCGTTCAATGCCCGCGCTCGCGAGGGACAATACAGCACAGGGGAGACGTA
TTGGGTCCAGGCCGACAGCGAGCCGCGTTGCGCGCTGGAGGCGCTCGCCT
TGGCCATCTTTCGGGAACATACTCAGGAGGCGCGTTTCGCCAAAGACCGC
TCCGGCGCAGAATGGTGGACCCAGGTTGTGGACGCGGAGGATGACGGAAT
CGGCTTCCACTTCGACAAGGACTACGCCCTCGAGACGGCCGGCGTCAACA
TTCACCCGGCGATCGGCACTGTCACGTCAGTTTCC
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