mRNA_P-wetherbeei_contig10288.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10288.1.1
Unique NamemRNA_P-wetherbeei_contig10288.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: D7G547_ECTSI (GYF_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G547_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.680e-16
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 MAE-WYYVD-SSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGSLYAQVKAAIA-GPPVPTRGGAPPLPVKPAA 246
            MAE WYYVD ++NAQ GP +  +L RLYAS++VT++TL WKDG A W  LS++ SL+AQV A    GPP       PP+P KP A
Sbjct:    1 MAEAWYYVDDATNAQQGPCTIPELERLYASSSVTDSTLFWKDGQADWSALSALPSLHAQVTAPPQRGPPALPAKTLPPVPAKPRA 85          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: A0A836C908_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C908_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.350e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   10 WYYVD-SSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGSLYAQVKAAIAGPPVPT 207
            W+YVD ++N QSGP + + L  L A  T+ + TL+W+DGL GWEPL+S+ SL +QVKA  A PP+PT
Sbjct:    5 WFYVDPATNTQSGPCNISQLAGLVARGTLGDGTLMWRDGLPGWEPLASIPSLISQVKAPKAAPPLPT 71          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: A0A4V1N0S8_9GAMM (RDD family protein n=1 Tax=Pseudoxanthomonas composti TaxID=2137479 RepID=A0A4V1N0S8_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 1.810e-10
Identity = 33/76 (43.42%), Postives = 39/76 (51.32%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGSLYAQVKAAIAGPPVPTRGGAPPL 228
            M  WYY D    Q GP+  A L RL+    VT  TLVW+DGLA W+PL       A V+     PP P    APP+
Sbjct:    1 MTNWYYADRLRQQQGPIDDAQLARLFQENAVTLDTLVWRDGLANWQPLRDFAGELALVEL----PPTPVVSAAPPV 72          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: A0A7V8GKR8_9GAMM (Transporter n=1 Tax=Pseudoxanthomonas broegbernensis TaxID=83619 RepID=A0A7V8GKR8_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 5.800e-10
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSV 153
            M EWYY D    Q GPV+ A+L RL+ S  V  ATLVW+DGL  W PLS +
Sbjct:    1 MTEWYYADRQRQQQGPVAAAELARLFQSGQVDAATLVWRDGLPEWRPLSGL 51          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: UPI001CE3B8E2 (RDD family protein n=1 Tax=Stenotrophomonas sp. Marseille-Q4652 TaxID=2866595 RepID=UPI001CE3B8E2)

HSP 1 Score: 63.2 bits (152), Expect = 7.850e-10
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGS-LYAQVKAAIAGPPVPTRG 213
            M+EWYY D+   Q GPVS  +L   + + TV  +TLVW++G+A W+PLSS+ + L  Q  A    PP PT G
Sbjct:    1 MSEWYYADARRQQHGPVSSEELRAHFGAGTVDLSTLVWREGMAQWQPLSSMAAELDLQEPAPAPEPPEPTFG 72          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: UPI0004630592 (RDD family protein n=3 Tax=Pseudoxanthomonas TaxID=83618 RepID=UPI0004630592)

HSP 1 Score: 62.0 bits (149), Expect = 2.180e-9
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGSLYAQVKAAIAGPP-VPTRGGAPPLPVKPAAAVA 255
            M +WYY D    Q GP+   ++ RL+ +  V  ATLVW+DG+A W+PL   G++ A++    A PP +  R G  P+P  PA A A
Sbjct:    1 MTQWYYADRQRRQLGPLPATEIARLFRAGEVDAATLVWRDGMAAWQPL---GTMRAELGMDEAPPPTLDFRAGPEPVPAAPAEAPA 83          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: A0A352QSC3_9GAMM (Uncharacterized protein n=1 Tax=Arenimonas sp. TaxID=1872635 RepID=A0A352QSC3_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 8.800e-9
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPL 144
            M +WYYVD  + + GPVSP  L + Y    VT  +LVW+DGLA WEPL
Sbjct:    1 MQQWYYVDRHHDRQGPVSPEGLAQAYRQGKVTRDSLVWRDGLAKWEPL 48          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: UPI000419A0AD (RDD family protein n=1 Tax=Luteimonas mephitis TaxID=83615 RepID=UPI000419A0AD)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-8
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSVGSLYAQVKAAIAGPPVPTR 210
            MA+WYY D    + GPVS ADL  L+A+  +   TLVW++GLA W+P  S   +  +V AA    P P R
Sbjct:    1 MAQWYYSDYERNRHGPVSAADLAMLHANGQLAGDTLVWREGLAQWQPWHS---MIDEVVAATPAAPAPAR 67          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: UPI001B336C2F (RDD family protein n=1 Tax=Pseudoxanthomonas helianthi TaxID=1453541 RepID=UPI001B336C2F)

HSP 1 Score: 58.5 bits (140), Expect = 3.770e-8
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPL 144
            M+EW+Y D +  + GPV  A+L RL+ + +V   TLVW++GL+GW+PL
Sbjct:    1 MSEWHYADRNRQRHGPVESAELARLFRNGSVALDTLVWREGLSGWQPL 48          
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Match: UPI001389A28E (RDD family protein n=1 Tax=Pseudoxanthomonas taiwanensis TaxID=176598 RepID=UPI001389A28E)

HSP 1 Score: 58.2 bits (139), Expect = 4.860e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSSV 153
            M +WYY D+   Q GPV  ++L +L+ +  V +ATLVW++GLA W+PL +V
Sbjct:    1 MNKWYYADAQRRQIGPVPASELVQLHQAGQVDDATLVWREGLANWQPLGTV 51          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10288.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G547_ECTSI7.680e-1654.12GYF_2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836C908_9STRA2.350e-1353.73P-loop containing nucleoside triphosphate hydrolas... [more]
A0A4V1N0S8_9GAMM1.810e-1043.42RDD family protein n=1 Tax=Pseudoxanthomonas compo... [more]
A0A7V8GKR8_9GAMM5.800e-1054.90Transporter n=1 Tax=Pseudoxanthomonas broegbernens... [more]
UPI001CE3B8E27.850e-1045.83RDD family protein n=1 Tax=Stenotrophomonas sp. Ma... [more]
UPI00046305922.180e-940.70RDD family protein n=3 Tax=Pseudoxanthomonas TaxID... [more]
A0A352QSC3_9GAMM8.800e-954.17Uncharacterized protein n=1 Tax=Arenimonas sp. Tax... [more]
UPI000419A0AD1.410e-844.29RDD family protein n=1 Tax=Luteimonas mephitis Tax... [more]
UPI001B336C2F3.770e-847.92RDD family protein n=1 Tax=Pseudoxanthomonas helia... [more]
UPI001389A28E4.860e-847.06RDD family protein n=1 Tax=Pseudoxanthomonas taiwa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10288contigP-wetherbeei_contig10288:1816..2070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1211114.ALIP01000122_gene2130
PFAMsDUF4339,RDD
Model size255
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.4e-11
EggNOG OGsCOG1714@1|root,COG1714@2|Bacteria
DescriptionRDD family
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.9023826-CDS-P-wetherbeei_contig10288:1815..20701683185861.9023826-CDS-P-wetherbeei_contig10288:1815..2070Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10288 1816..2070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10288.1.1prot_P-wetherbeei_contig10288.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10288 1816..2070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10288.1.1

>prot_P-wetherbeei_contig10288.1.1 ID=prot_P-wetherbeei_contig10288.1.1|Name=mRNA_P-wetherbeei_contig10288.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MAEWYYVDSSNAQSGPVSPADLGRLYASTTVTNATLVWKDGLAGWEPLSS
VGSLYAQVKAAIAGPPVPTRGGAPPLPVKPAAAVA
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mRNA from alignment at P-wetherbeei_contig10288:1816..2070-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10288.1.1 ID=mRNA_P-wetherbeei_contig10288.1.1|Name=mRNA_P-wetherbeei_contig10288.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig10288:1816..2070- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAATGGTATTACGTTGACAGCTCCAACGCTCAGAGCGGGCCAGT CTCCCCGGCCGACCTCGGGCGCCTCTATGCCAGCACTACGGTTACGAATG CAACGCTCGTGTGGAAGGACGGATTAGCGGGATGGGAGCCGCTGAGCTCA GTCGGGTCGCTGTACGCGCAGGTCAAGGCTGCAATTGCCGGACCTCCCGT GCCGACGCGAGGCGGGGCACCACCGCTGCCCGTCAAGCCTGCTGCAGCAG TAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10288:1816..2070-

>mRNA_P-wetherbeei_contig10288.1.1 ID=mRNA_P-wetherbeei_contig10288.1.1|Name=mRNA_P-wetherbeei_contig10288.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig10288:1816..2070- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGAATGGTATTACGTTGACAGCTCCAACGCTCAGAGCGGGCCAGT
CTCCCCGGCCGACCTCGGGCGCCTCTATGCCAGCACTACGGTTACGAATG
CAACGCTCGTGTGGAAGGACGGATTAGCGGGATGGGAGCCGCTGAGCTCA
GTCGGGTCGCTGTACGCGCAGGTCAAGGCTGCAATTGCCGGACCTCCCGT
GCCGACGCGAGGCGGGGCACCACCGCTGCCCGTCAAGCCTGCTGCAGCAG
TAGCA
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