mRNA_P-wetherbeei_contig10285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10285.1.1
Unique NamemRNA_P-wetherbeei_contig10285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: A0A835Z8G7_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.930e-13
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            KRL ++R PRVLCLHFCRRHY   R  MV+L QRV FP  L  +     G     +A     LY L+AVI H GSA+ GHY
Sbjct:  276 KRLSLARLPRVLCLHFCRRHYSPSRERMVKLSQRVRFPLELTRDGLARCG----ASAAADSDLYLLRAVIVHQGSADAGHY 352          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: A0A7S2VHG5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHG5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.730e-12
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPY------HVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            K   + RPPRVLC+H  RRH+     GMV++ +RV FPE LDL  Y        + D    +     + Y+L +V+EH GSA GGHY
Sbjct:  381 KATLIMRPPRVLCIHVQRRHFDMASQGMVKISRRVHFPEVLDLSNYCAYAENSFEKDCTTKSIDWPKLPYKLMSVVEHKGSAFGGHY 467          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: J9EE29_9SPIT (Poly n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9EE29_9SPIT)

HSP 1 Score: 58.9 bits (141), Expect = 4.210e-8
Identity = 36/89 (40.45%), Postives = 46/89 (51.69%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEP--------YHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            K+  V+ PP++LCLH  R  Y +  G +V  RQ+V +P+ LDL          Y VD            + YRL  VIEH GSA GGHY
Sbjct: 1239 KKFSVANPPKILCLHIKRVVY-SNTGDIVLNRQQVQYPDVLDLSKISSIKQNGYQVD------------VKYRLSGVIEHFGSAFGGHY 1314          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: UPI000C6E5264 (ubiquitin carboxyl-terminal hydrolase 36-like isoform X2 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E5264)

HSP 1 Score: 58.2 bits (139), Expect = 7.700e-8
Identity = 36/87 (41.38%), Postives = 45/87 (51.72%), Query Frame = 1
Query:   16 RVRCRKRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHG-SAEGGHY 273
            +V  +KR  V RPP V    F R  Y    GG  ++ + V +PE LDL PY  D         GGP++YRL AV+ H G S   GHY
Sbjct:   41 KVSAQKRFTVHRPPNVATFQFKRFDYNRMFGG--KITKHVSYPEKLDLRPYMSDTK-------GGPVIYRLNAVLVHLGPSCNSGHY 118          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: A0A6S7LHW8_LACSI (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Lactuca TaxID=4235 RepID=A0A6S7LHW8_LACSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDG--DDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            KR+ +S+ P +L +H  R    AR G + +L   V F +T+DLEPY       D GG        Y L  V+EH GSA GGHY
Sbjct:  692 KRILISKVPPILTIHLKRLSQDAR-GRLSKLNGHVDFKDTIDLEPYMDPSCCKDKGGER----YQYGLIGVVEHSGSARGGHY 769          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: UPI0003F08669 (ubiquitin carboxyl-terminal hydrolase 42-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08669)

HSP 1 Score: 51.6 bits (122), Expect = 1.520e-5
Identity = 33/82 (40.24%), Postives = 42/82 (51.22%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHG-SAEGGHY 273
            K+L V R P VL +   R  +    G   ++ + V +PE LDL PY            GGPI+YRL AV+ HHG S   GHY
Sbjct:    9 KKLTVHRAPNVLTISLKRFDFHRFMGS--KINKDVRYPEILDLHPYMSQKT-------GGPIMYRLYAVLVHHGYSCNSGHY 81          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: C1H0N3_PARBA (Ubiquitinyl hydrolase 1 n=5 Tax=Paracoccidioides TaxID=38946 RepID=C1H0N3_PARBA)

HSP 1 Score: 51.6 bits (122), Expect = 1.560e-5
Identity = 30/79 (37.97%), Postives = 38/79 (48.10%), Query Frame = 1
Query:   37 LFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            +F S PP VL LH  R  Y   R  M+++  R+ FPE  D  PY  D  D        P +Y+L  V+ H G    GHY
Sbjct:  406 IFESFPP-VLHLHLKRFEYDINRDAMMKINDRLEFPEEFDAAPYLSDDADKSE-----PWVYQLHGVLVHSGDFNAGHY 478          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: A0A6A0GQQ2_HYAAZ (USP domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GQQ2_HYAAZ)

HSP 1 Score: 51.2 bits (121), Expect = 2.040e-5
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 1
Query:   31 KRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHV--------DGDDDGGAAGGGP-ILYRLQAVIEHHGSAEGGHY 273
            KR+ + + P VL LH  R  +  R G   + R RV +P  LD+  +          + +   G+    P +LY LQAVIEH GSA  GH+
Sbjct:  328 KRITIGKLPEVLVLHINRTMWTDRDGAAFKRRDRVWYPLLLDMSCFTYTSATCRGNEAEFSSGSEVREPSVLYELQAVIEHSGSASSGHF 417          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: A6QT10_AJECN (Ubiquitinyl hydrolase 1 n=5 Tax=Histoplasma TaxID=5036 RepID=A6QT10_AJECN)

HSP 1 Score: 50.4 bits (119), Expect = 3.990e-5
Identity = 29/79 (36.71%), Postives = 38/79 (48.10%), Query Frame = 1
Query:   37 LFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            +F S PP VL LH  R  Y   R  M+++  R+ FPE  D  PY  +  D        P +Y+L  V+ H G    GHY
Sbjct:  410 IFESFPP-VLHLHLKRFEYDINRDAMMKINDRLEFPEEFDAAPYLSEDADKSE-----PWIYQLHGVLVHSGDFNAGHY 482          
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Match: C5GI29_AJEDR (Ubiquitinyl hydrolase 1 n=18 Tax=Ajellomycetaceae TaxID=299071 RepID=C5GI29_AJEDR)

HSP 1 Score: 50.4 bits (119), Expect = 3.990e-5
Identity = 29/79 (36.71%), Postives = 38/79 (48.10%), Query Frame = 1
Query:   37 LFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPETLDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY 273
            +F S PP VL LH  R  Y   R  M+++  R+ FPE  D  PY  +  D        P +Y+L  V+ H G    GHY
Sbjct:  433 IFESFPP-VLHLHLKRFEYDINRDAMMKINDRLEFPEEFDAAPYLSEDADKSE-----PWIYQLHGVLVHSGDFNAGHY 505          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z8G7_9STRA1.930e-1351.85Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A7S2VHG5_9STRA8.730e-1242.53Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Skel... [more]
J9EE29_9SPIT4.210e-840.45Poly n=1 Tax=Oxytricha trifallax TaxID=1172189 Rep... [more]
UPI000C6E52647.700e-841.38ubiquitin carboxyl-terminal hydrolase 36-like isof... [more]
A0A6S7LHW8_LACSI1.730e-640.96Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Lact... [more]
UPI0003F086691.520e-540.24ubiquitin carboxyl-terminal hydrolase 42-like n=1 ... [more]
C1H0N3_PARBA1.560e-537.97Ubiquitinyl hydrolase 1 n=5 Tax=Paracoccidioides T... [more]
A0A6A0GQQ2_HYAAZ2.040e-535.56USP domain-containing protein n=1 Tax=Hyalella azt... [more]
A6QT10_AJECN3.990e-536.71Ubiquitinyl hydrolase 1 n=5 Tax=Histoplasma TaxID=... [more]
C5GI29_AJEDR3.990e-536.71Ubiquitinyl hydrolase 1 n=18 Tax=Ajellomycetaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10285contigP-wetherbeei_contig10285:606..1160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps23731
PFAMsUCH
Model size273
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.91e-10
EggNOG OGsCOG5560@1|root,KOG1873@2759|Eukaryota,2XDGN@2836|Bacillariophyta
DescriptionBelongs to the peptidase C19 family
Cds size273
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.8529103-CDS-P-wetherbeei_contig10285:605..7751683185861.8529103-CDS-P-wetherbeei_contig10285:605..775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10285 606..775 +
1683185861.8663921-CDS-P-wetherbeei_contig10285:1057..11601683185861.8663921-CDS-P-wetherbeei_contig10285:1057..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10285 1058..1160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10285.1.1prot_P-wetherbeei_contig10285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10285 606..1160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10285.1.1

>prot_P-wetherbeei_contig10285.1.1 ID=prot_P-wetherbeei_contig10285.1.1|Name=mRNA_P-wetherbeei_contig10285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
SPPARRVRCRKRLFVSRPPRVLCLHFCRRHYCARRGGMVRLRQRVVFPET
LDLEPYHVDGDDDGGAAGGGPILYRLQAVIEHHGSAEGGHY
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mRNA from alignment at P-wetherbeei_contig10285:606..1160+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10285.1.1 ID=mRNA_P-wetherbeei_contig10285.1.1|Name=mRNA_P-wetherbeei_contig10285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig10285:606..1160+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCCACCGGCGAGGCGGGTGCGGTGCCGGAAGCGGCTGTTTGTGTCACG GCCACCGCGGGTGCTCTGCCTGCACTTCTGTCGCCGTCACTACTGCGCCC GCCGCGGCGGCATGGTGCGGCTGCGGCAGCGCGTCGTTTTCCCCGAGACG TTGGATCTGGAGCCGTACCAGTCCAGCTGGAATGATGCTGGCCCGATTCT GGCGGCGCCGGCGCCCCCGCCGGCGTTTGCCGAGGGGTCCGCAGGGGCGG TGGTGGCGCTGACAGCGGGAAGGGGGGCTGCAGCAGCAACCGCGGCCACG GCGGCACAAGAGCCGGCAGCGCCATCAGAGGCAGCACAGGCATCGGCAGC GCCGGCGGCAGCGGCAGCGGCAACAGGAGCCGCGGTGGCAGGGGCGGCGA CTGCGGCAAAGACCGCCGTGGCCGGCGCCGTAGTTTCAGAAGGGAGCGCA AGTGTCGACGGAGATGACGACGGCGGTGCTGCTGGCGGGGGGCCAATTTT GTACCGGCTGCAGGCCGTGATTGAGCACCACGGCTCGGCGGAGGGCGGGC ATTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10285:606..1160+

>mRNA_P-wetherbeei_contig10285.1.1 ID=mRNA_P-wetherbeei_contig10285.1.1|Name=mRNA_P-wetherbeei_contig10285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig10285:606..1160+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCCACCGGCGAGGCGGGTGCGGTGCCGGAAGCGGCTGTTTGTGTCACG
GCCACCGCGGGTGCTCTGCCTGCACTTCTGTCGCCGTCACTACTGCGCCC
GCCGCGGCGGCATGGTGCGGCTGCGGCAGCGCGTCGTTTTCCCCGAGACG
TTGGATCTGGAGCCGTACCATGTCGACGGAGATGACGACGGCGGTGCTGC
TGGCGGGGGGCCAATTTTGTACCGGCTGCAGGCCGTGATTGAGCACCACG
GCTCGGCGGAGGGCGGGCATTAC
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