mRNA_P-wetherbeei_contig13460.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13460.1.1
Unique NamemRNA_P-wetherbeei_contig13460.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: A0A1F4ISU6_9BURK (Pilus assembly protein PilF n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4ISU6_9BURK)

HSP 1 Score: 66.2 bits (160), Expect = 4.310e-11
Identity = 39/103 (37.86%), Postives = 49/103 (47.57%), Query Frame = 1
Query:    7 GYVYHLKKDYERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESAEALERAASLQPMNGHXXXXXXXXXXXXXXXXXXXXVTAHLDRFDPKMALHLTRGT 315
             YV         A   FR AL+ D+K+DRAWYGLGL L   GR +E+ +AL+R   LQPM+                      V  HL  F+PK+A  L R T
Sbjct:   95 AYVAEQLDQLALAEEGFRAALQIDEKMDRAWYGLGLVLVRQGRLQEALQALDRNTRLQPMSPFGWYQMARVHVDLHQPEEARAVIRHLKGFEPKVAAQLERET 197          
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: UPI001AE03BD5 (tetratricopeptide repeat protein n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001AE03BD5)

HSP 1 Score: 66.2 bits (160), Expect = 4.440e-11
Identity = 38/93 (40.86%), Postives = 48/93 (51.61%), Query Frame = 1
Query:   37 ERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESAEALERAASLQPMNGHXXXXXXXXXXXXXXXXXXXXVTAHLDRFDPKMALHLTRGT 315
            E A   FR ALR ++K+DRAWYGLGL L   GR +E+ +AL+R   LQPM+                      V  HL  F+PK+A  L R T
Sbjct:  105 EIAEQGFRAALRIEEKMDRAWYGLGLVLVRQGRLDEALDALKRNTKLQPMSPFGWYQMARVHVDLQQPEEARAVIRHLKGFEPKVAAQLERET 197          
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: A0A0P0MC35_9BURK (Lipoprotein NlpI n=1 Tax=Limnohabitans sp. 63ED37-2 TaxID=1678128 RepID=A0A0P0MC35_9BURK)

HSP 1 Score: 61.6 bits (148), Expect = 2.480e-9
Identity = 38/105 (36.19%), Postives = 51/105 (48.57%), Query Frame = 1
Query:    1 DLGYVYHLKKDYERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESAEALERAASLQPMNGHXXXXXXXXXXXXXXXXXXXXVTAHLDRFDPKMALHLTRGT 315
            ++G+V       + A  AFR A++ D+K+DRAWYGLGL L    R EES  A +R   LQ M+ +                    V  HL  F+PK+A  L R T
Sbjct:   93 NVGFVREELGLSQDAEQAFRAAIQIDEKMDRAWYGLGLVLVRQRRFEESLLAFKRNTELQSMSPYAWYQMARVHMEMHAPDKALEVMRHLKGFEPKVAAQLERET 197          
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: A0A315E141_9BURK (Pilus assembly protein PilF n=2 Tax=Limnohabitans sp. 2KL-17 TaxID=1100704 RepID=A0A315E141_9BURK)

HSP 1 Score: 61.2 bits (147), Expect = 3.470e-9
Identity = 38/105 (36.19%), Postives = 49/105 (46.67%), Query Frame = 1
Query:    1 DLGYVYHLKKDYERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESAEALERAASLQPMNGHXXXXXXXXXXXXXXXXXXXXVTAHLDRFDPKMALHLTRGT 315
            ++G+V       + A  AF  A+  D+K+DRAWYGLGLAL    R  ES  A ER   LQ M+ +                    V  HL  F+PK+A  L R T
Sbjct:   93 NVGFVCEELGRSQDAEAAFNAAIAIDEKMDRAWYGLGLALVRQQRFAESLVAFERNTQLQSMSPYAWYQMARVHMEMQEPDKALQVMRHLKGFEPKVAAQLERET 197          
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: A0A552Q6C8_9CHRO (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Microcystis panniformis Mp_MB_F_20051200_S9 TaxID=2486223 RepID=A0A552Q6C8_9CHRO)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-5
Identity = 25/61 (40.98%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    7 GYVYHLKKDYERAITAFRDALRRD--QKIDRAWYGLGLALGSLGRHEESAEALERAASLQP 183
            G ++ L++ +E AI AF +A++++  + +  AWYG GLALGSLG+++ + EAL++A +  P
Sbjct:  545 GQLWRLQR-FEEAIKAFDEAIKQNDPKNVYLAWYGKGLALGSLGKYQPAIEALQQAINTLP 604          
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Match: A0A3C1G4E7_9BACT (Uncharacterized protein n=1 Tax=Nitrospiraceae bacterium TaxID=2026770 RepID=A0A3C1G4E7_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 6.370e-5
Identity = 21/60 (35.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    4 LGYVYHLKKDYERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESAEALERAASLQP 183
            LG  Y+  K+Y+ A+ AF+D++RR       +YGL L   + G++ ++A  L++A  L P
Sbjct:  146 LGMAYYRIKNYQAAMDAFKDSIRRFSDFSYPYYGLALVYNATGKYTDAAMTLQKALELDP 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1F4ISU6_9BURK4.310e-1137.86Pilus assembly protein PilF n=3 Tax=Burkholderiale... [more]
UPI001AE03BD54.440e-1140.86tetratricopeptide repeat protein n=1 Tax=Rhodofera... [more]
A0A0P0MC35_9BURK2.480e-936.19Lipoprotein NlpI n=1 Tax=Limnohabitans sp. 63ED37-... [more]
A0A315E141_9BURK3.470e-936.19Pilus assembly protein PilF n=2 Tax=Limnohabitans ... [more]
A0A552Q6C8_9CHRO2.560e-540.98Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A3C1G4E7_9BACT6.370e-535.00Uncharacterized protein n=1 Tax=Nitrospiraceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13460contigP-wetherbeei_contig13460:2..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog593750.Metfor_2249
PFAMsPkinase,TPR_1,TPR_11,TPR_16,TPR_17,TPR_2,TPR_6,TPR_8
Model size315
Max annot lvl2157|Archaea
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.97e-09
EggNOG OGsCOG0457@1|root,arCOG03038@2157|Archaea
DescriptionTetratricopeptide TPR_2 repeat protein
Cds size315
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.3638723-CDS-P-wetherbeei_contig13460:1..3161683185986.3638723-CDS-P-wetherbeei_contig13460:1..316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13460 2..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13460.1.1prot_P-wetherbeei_contig13460.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13460 2..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13460.1.1

>prot_P-wetherbeei_contig13460.1.1 ID=prot_P-wetherbeei_contig13460.1.1|Name=mRNA_P-wetherbeei_contig13460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
DLGYVYHLKKDYERAITAFRDALRRDQKIDRAWYGLGLALGSLGRHEESA
EALERAASLQPMNGHAWYELGMAYYTLNRRDKLAEVTAHLDRFDPKMALH
LTRGT
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mRNA from alignment at P-wetherbeei_contig13460:2..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13460.1.1 ID=mRNA_P-wetherbeei_contig13460.1.1|Name=mRNA_P-wetherbeei_contig13460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig13460:2..316+ (Phaeothamnion wetherbeei SAG_119_79)
GATCTCGGTTACGTTTATCACCTGAAAAAAGATTATGAGCGGGCGATCAC GGCTTTTCGCGATGCGTTGCGGCGCGATCAGAAAATCGACCGCGCCTGGT ACGGGTTGGGGTTGGCACTCGGCTCGCTCGGCCGCCACGAAGAATCAGCC GAAGCGCTGGAACGGGCGGCATCACTGCAGCCCATGAACGGGCATGCCTG GTACGAACTGGGCATGGCCTATTACACGCTGAACCGCCGCGATAAGCTCG CGGAAGTCACCGCCCATCTCGACCGCTTCGATCCCAAAATGGCTTTGCAC CTGACCCGCGGCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13460:2..316+

>mRNA_P-wetherbeei_contig13460.1.1 ID=mRNA_P-wetherbeei_contig13460.1.1|Name=mRNA_P-wetherbeei_contig13460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig13460:2..316+ (Phaeothamnion wetherbeei SAG_119_79)
GATCTCGGTTACGTTTATCACCTGAAAAAAGATTATGAGCGGGCGATCAC
GGCTTTTCGCGATGCGTTGCGGCGCGATCAGAAAATCGACCGCGCCTGGT
ACGGGTTGGGGTTGGCACTCGGCTCGCTCGGCCGCCACGAAGAATCAGCC
GAAGCGCTGGAACGGGCGGCATCACTGCAGCCCATGAACGGGCATGCCTG
GTACGAACTGGGCATGGCCTATTACACGCTGAACCGCCGCGATAAGCTCG
CGGAAGTCACCGCCCATCTCGACCGCTTCGATCCCAAAATGGCTTTGCAC
CTGACCCGCGGCACG
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