mRNA_P-wetherbeei_contig1346.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1346.1.1
Unique NamemRNA_P-wetherbeei_contig1346.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Match: A0A6H5K2E2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2E2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.300e-18
Identity = 39/82 (47.56%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    7 GIRLLPVFCMLLIVGPVLLPALFWLVDRVASSDIGVNLGLSN-PRKYLVDFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE 249
            GI++LP+  M ++ GPV+L  L ++ D VA+SD G+ +GL++ PR  L  FY K++P K+ +VDK +K+YKGRYPEM+++L+
Sbjct:   34 GIKILPLILMFVMFGPVVLTGLIFVFDYVANSDWGIKIGLADDPRTRLTKFYKKHNPTKMRDVDKLLKKYKGRYPEMFQRLD 115
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BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Match: A0A7S2A7L5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7L5_TRICV)

HSP 1 Score: 63.9 bits (154), Expect = 3.870e-10
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    7 GIRLLPVFCMLLIVGPVLLPALFWLVDRVAS--------SDIGVNLGLSN-PRKYLVDFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE 249
            GI+ LP+  ++L+ G  LLPAL +L D++           ++G  LG+ + P+K ++ FY K+DPAK+ EV   + +Y G YP++ K+LE
Sbjct:  100 GIKTLPLIMLVLLTGTTLLPALLFLGDKLGEVAQKKHLLGNLGYRLGVGHSPKKRVMSFYEKHDPAKIEEVPAILSKYYGDYPKLVKRLE 189
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BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Match: A0A7S1D7E6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7E6_CYCTE)

HSP 1 Score: 61.2 bits (147), Expect = 1.540e-9
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    7 GIRLLPVFCMLLIVGPVLLPALFWLVDRVAS--------SDIGVNLGL-SNPRKYLVDFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE 249
            GI+  P+  ++L+ G  LLP L +  D + S          +G  LG+ + P+K ++ FY K+DPAK+++V K + +Y G YP + KKLE
Sbjct:   88 GIKTTPLILLILMTGTTLLPGLIFASDYIGSMLQKHHVLGSVGYKLGIGATPKKRVMSFYEKHDPAKVHDVPKILGKYYGDYPSLIKKLE 177
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BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Match: A0A662X040_9STRA (PPIase cyclophilin-type domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X040_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 5.340e-5
Identity = 23/55 (41.82%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   97 SSDIGVNLGLSNP----RKYLVDFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE 249
            S D+ + +G+SN     +  LV FYTKY+P+KL+ +D+ ++ YKGR  E++ KL+
Sbjct:  256 SEDVFIGVGVSNEQTAFKNRLVKFYTKYNPSKLDTIDRTLEAYKGREEELFMKLQ 310
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BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Match: A0A662XKW3_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKW3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.270e-5
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   97 SSDIGVNLGLSNP----RKYLVDFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE 249
            S D+ +  G+SN     +  LV FYTKY+P+KL+ VD+ ++ YKGR  E++ KL+
Sbjct:  220 SEDVFIGAGVSNEQTAFKNRLVKFYTKYNPSKLDTVDRTLETYKGREEELFMKLQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1346.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2E2_9PHAE1.300e-1847.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2A7L5_TRICV3.870e-1037.78Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1D7E6_CYCTE1.540e-936.67Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A662X040_9STRA5.340e-541.82PPIase cyclophilin-type domain-containing protein ... [more]
A0A662XKW3_9STRA7.270e-543.64PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1346contigP-wetherbeei_contig1346:68..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIN0
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.77e-20
EggNOG OGs2D02J@1|root,2SCJ9@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004490.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185986.2410707-CDS-P-wetherbeei_contig1346:67..1271683185986.2410707-CDS-P-wetherbeei_contig1346:67..127Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1346 68..127 -
1683185986.2516415-CDS-P-wetherbeei_contig1346:264..4531683185986.2516415-CDS-P-wetherbeei_contig1346:264..453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1346 265..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1346.1.1prot_P-wetherbeei_contig1346.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1346 68..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1346.1.1

>prot_P-wetherbeei_contig1346.1.1 ID=prot_P-wetherbeei_contig1346.1.1|Name=mRNA_P-wetherbeei_contig1346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
GGGIRLLPVFCMLLIVGPVLLPALFWLVDRVASSDIGVNLGLSNPRKYLV
DFYTKYDPAKLNEVDKFMKRYKGRYPEMYKKLE
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mRNA from alignment at P-wetherbeei_contig1346:68..453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1346.1.1 ID=mRNA_P-wetherbeei_contig1346.1.1|Name=mRNA_P-wetherbeei_contig1346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=386bp|location=Sequence derived from alignment at P-wetherbeei_contig1346:68..453- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGGAATACGGCTTCTTCCTGTGTTTTGTATGCTCTTGATTGTTGG
ACCCGTACTGCTTCCTGCCCTCTTCTGGCTCGTGGATCGTGTAGCGAGCT
CGGACATTGGAGTCAACCTGGGCCTATCGAACCCGCGAAAGTATCTAGTC
GACTTTTACACTAAGTACGACCCCGCAAAGCTGAACGAGGTGAGCAACTT
GTCCTAATCTTATCTCCCATTTTCCTTTCAATGTTTCGTTGGCCGGTCAC
TGCACCTACGGCATCTGCTCCAACCGGGCTCATTTTATGTCACATCTCGC
GCTTTCAATGACATGCGTAATCTCAGGTCGACAAGTTCATGAAGCGGTAC
AAGGGAAGGTACCCCGAGATGTACAAGAAGCTGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1346:68..453-

>mRNA_P-wetherbeei_contig1346.1.1 ID=mRNA_P-wetherbeei_contig1346.1.1|Name=mRNA_P-wetherbeei_contig1346.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig1346:68..453- (Phaeothamnion wetherbeei SAG_119_79)
GGGGGCGGAATACGGCTTCTTCCTGTGTTTTGTATGCTCTTGATTGTTGG
ACCCGTACTGCTTCCTGCCCTCTTCTGGCTCGTGGATCGTGTAGCGAGCT
CGGACATTGGAGTCAACCTGGGCCTATCGAACCCGCGAAAGTATCTAGTC
GACTTTTACACTAAGTACGACCCCGCAAAGCTGAACGAGGTCGACAAGTT
CATGAAGCGGTACAAGGGAAGGTACCCCGAGATGTACAAGAAGCTGGAA
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