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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2270 |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Cds size | 1695 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683185986.159565-UTR-P-wetherbeei_contig1346:757..785 | 1683185986.159565-UTR-P-wetherbeei_contig1346:757..785 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1346 758..785 + |
| 1683185986.2135143-UTR-P-wetherbeei_contig1346:3682..4229 | 1683185986.2135143-UTR-P-wetherbeei_contig1346:3682..4229 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1346 3683..4229 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683185986.1752002-CDS-P-wetherbeei_contig1346:785..1763 | 1683185986.1752002-CDS-P-wetherbeei_contig1346:785..1763 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1346 786..1763 + |
| 1683185986.1867998-CDS-P-wetherbeei_contig1346:2176..2416 | 1683185986.1867998-CDS-P-wetherbeei_contig1346:2176..2416 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1346 2177..2416 + |
| 1683185986.195407-CDS-P-wetherbeei_contig1346:2812..3013 | 1683185986.195407-CDS-P-wetherbeei_contig1346:2812..3013 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1346 2813..3013 + |
| 1683185986.2043538-CDS-P-wetherbeei_contig1346:3406..3682 | 1683185986.2043538-CDS-P-wetherbeei_contig1346:3406..3682 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1346 3407..3682 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1346.2.2 >prot_P-wetherbeei_contig1346.2.2 ID=prot_P-wetherbeei_contig1346.2.2|Name=mRNA_P-wetherbeei_contig1346.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=565bp
MRNLVLTTLAIASTPSLVDGTPCLARQCVLRLHADVDICCSRIDIPPVTI
CSRSHIFSSGFVGVPLALQGGAASRTTPSVCRMASGGEEGGRSVNAAVAA
VLGAALVATSPPMTSLAGAFMQPPAAYAAETVAADSDLKSLLGEFKEEVQ
SKAAAPVKKAAPPVSPKAAAPAPAAVKKAAPVAPKKVAVPVPSAAASKAS
VEAAKKKAAAEANARKKTAAEAAKKAADAAEKAKREEAQRAETERKALLE
RIQGARARMGVPPVAGSQSVRTGVFAAGGGAGSGAATIKTREDTELEATR
KERSVTEASVRGLNKLLDSSKAKLKETTSTLASNERKLSDIERQLKRTES
RADAITLEGSRREVKAAIAAGKKTEAELKKTIDKAERDVKAKSKDLKGIS
KTEAKQAKAAQAKRETLVKQEVEARQKRMEAERAAREKAQQAAREKAAAQ
KAKAKAAAEVAAKDAAAKKKAYEGELAKRKAEAAAQERQAEQRLQQEEQQ
LAREQKKKAEADKKSTELAAQVAKDAAAKAKLQAADAKQLAAAEAAAKAA
EAEAARAAARLKSL* back to topmRNA from alignment at P-wetherbeei_contig1346:758..4229+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1346.2.2 ID=mRNA_P-wetherbeei_contig1346.2.2|Name=mRNA_P-wetherbeei_contig1346.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3472bp|location=Sequence derived from alignment at P-wetherbeei_contig1346:758..4229+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTCCCGGCGTCAGGGGTGCATTGACATGAGAAACCTGGTGCTGACCA
CGCTTGCAATTGCCTCCACCCCCAGTCTAGTCGACGGTACGCCGTGTCTC
GCACGACAGTGCGTCCTCCGGCTGCACGCCGACGTGGACATTTGCTGTAG
TCGCATTGATATTCCTCCCGTAACGATTTGTTCTCGCTCCCATATTTTTT
CTTCAGGTTTTGTTGGCGTGCCGCTGGCGCTGCAGGGAGGTGCTGCGTCA
CGCACCACGCCGAGCGTATGCCGTATGGCAAGCGGCGGCGAGGAGGGCGG
GCGAAGCGTCAACGCTGCTGTCGCCGCGGTCCTTGGCGCGGCTCTTGTCG
CAACTAGCCCGCCCATGACCTCGCTGGCCGGCGCCTTTATGCAACCGCCG
GCCGCGTACGCCGCCGAAACGGTCGCAGCCGACAGCGACCTCAAGAGCTT
GCTCGGTGAGTTCAAGGAGGAGGTGCAGTCGAAGGCAGCGGCACCGGTAA
AGAAGGCAGCGCCGCCGGTCTCGCCAAAGGCGGCGGCGCCCGCTCCCGCC
GCCGTCAAGAAAGCGGCACCCGTGGCGCCCAAGAAGGTGGCGGTGCCAGT
CCCGTCTGCCGCGGCGTCTAAGGCGAGCGTGGAGGCCGCAAAGAAGAAGG
CAGCGGCGGAGGCGAACGCCCGGAAGAAAACGGCGGCCGAGGCGGCCAAA
AAGGCGGCAGATGCGGCCGAGAAGGCCAAACGGGAGGAAGCACAGCGTGC
CGAGACAGAAAGAAAGGCGCTCTTGGAGAGGATCCAGGGGGCACGGGCGC
GGATGGGAGTGCCACCGGTAGCGGGCAGCCAGTCGGTCCGGACGGGCGTG
TTCGCGGCGGGTGGCGGCGCCGGCTCGGGTGCGGCGACGATCAAGACGCG
CGAGGACACGGAGCTGGAGGCGACGCGAAAGGAGCGGAGCGTGACGGAGG
CGTCGGTGCGCGGCCTCAACAAGCTGCTCGACTCGTCCAAGGCCAAGTTG
AAGGAGGTGAGTCGAGCCCGGACGGGAGAGGATAGAGATAGGGAAAGGAC
TTGCTTAACCAGTCGTGTTCGAAAGTGAAACGGAAACTGCATTTGACTGC
CGAGAACACAATCTGTTTGAACGCGTTCTGTGTTGAGCATCTGTTTTTTT
CTGACTTTCGCAGCAACGATGCGATGTCGGTTCCTCTCGGTGCAGGAAGA
GCTTGTGGCTTTGCCGCCGCGGGCGGATCTGGGCGTACAACTCAGCGTAA
TCTGCTCAGTTGTCCTTTCTACGTGTCGCCTTCGCTGTTAAGTGTTCAAC
TGTGCTTTAGTTTTATATTTTTGCTTCTGTACTTCATCCCTGCAGTTTTG
CCCGCTCAAATCGGTCTTGCACCTTTCTTTCGGCCGTGCCATTTCGTCGC
TACTTCTGTGCTATGTCAGACGACGAGCACCCTCGCGTCGAACGAACGCA
AGCTGTCTGACATTGAGCGACAGCTGAAGCGCACTGAGAGTCGCGCCGAT
GCCATCACGCTGGAGGGGTCCCGGCGGGAGGTGAAGGCGGCCATCGCCGC
GGGCAAGAAGACAGAGGCGGAGCTCAAGAAGACCATCGATAAGGCAGAGC
GCGACGTCAAGGCGAAGAGCAAGGACCTCAAAGGCATCAGCAAGACCGAG
GCCAAGCAGGTACGTTGGCGGGATGGGCGTGAATATGGGGTTCTTCACCT
CCCGTTGCTTTGAACGATTGCTTTCTACCTTTCCCCTTAAATTTGCTGCG
CCTGTCTTCTTTTTTTGGCCTTAATTGTCGCGGAAAACAGTTTTCCATGA
GAAAAGGTGAAATTGAAGCAGCCCCGTGGCGGGCAACGAGCTCTCCATCC
TCGGCTGAGAATGCCCTTGAGTAGTAGTACTCCATGCTCCTTCATTTCCT
GTTCCGGCTGAGTCATGCTTTCCCTTGCCGATCCTTCAATATGTTGGTGC
TGGTCCTCTAAATCGTCATCTCTTTTTCAATGATTATGTGTTCTGATTGC
GGCTGCGCGCTGCGGGATGCGCCGCGTCTCCCTTTGGAGCCCCAACCGAC
CACAGGCAAAGGCCGCTCAGGCAAAGCGGGAGACACTGGTGAAGCAGGAG
GTGGAGGCGCGGCAAAAGCGAATGGAGGCGGAGCGGGCAGCGAGAGAAAA
GGCGCAGCAGGCGGCGCGCGAGAAGGCGGCGGCCCAAAAGGCCAAGGCCA
AGGCCGCCGCGGAGGTGGCCGCCAAGGACGCTGCCGCCAAGAAGAAAGCG
TACGAGGTGAGGAAAGGAAGGAGGGGAGGGAGGCGAGGGGAAAGGGGGCC
GCCGCGGCGGTTCGGTGCAGTCGTGTCAATTGTCCACGCTTTGGCTGTCC
ACTCGGGCGGGCAGCTTTTGCAAAAGCGTCGCGCTTTTCTGTCGTTTGAG
CTCTCTTGTGCAAAGCGAGTGTGCACAGCAGCAACAGCACCGTTCTTGGC
ATATGATTTTCTGCCAAAAAGGTAGACGAGTCCAGTAGGCGGAGATGGTT
GCAAATACAGAGATGTTGCGAAGGCAAGTGTGCGCGTCCGTATTCAAAAG
CCTTCCATTCGTTTGGGAGGGTTAACGCACTTCACACACATCTCACGAAT
CCCAAAACGCTACCGTGGCCTATGCTGGCGCGGTCGATTTTATCTACAGG
GCGAGCTGGCGAAGCGGAAGGCGGAGGCGGCGGCGCAGGAGCGGCAGGCG
GAGCAGCGTCTCCAGCAGGAGGAGCAGCAGCTGGCGCGGGAGCAGAAGAA
AAAGGCGGAGGCCGACAAAAAGTCGACGGAGCTGGCGGCCCAGGTAGCCA
AGGACGCCGCGGCGAAGGCCAAGCTCCAGGCCGCCGACGCGAAGCAGCTG
GCCGCCGCCGAGGCCGCTGCCAAGGCCGCCGAGGCCGAGGCGGCGCGCGC
GGCCGCTCGCCTCAAGAGCCTCTGAAGAGGGAGAGCATGCATCTAGCGGT
GGCAATGGCGGCGCGTAGGACGGGAGGCGGAGCGTCGTGGCGGGAGGGCG
GAGCACGGCGCTGCTGACGGCTGGGCTGGAGCGCGCGGGCCGGCGCGCCC
GCCTCTCCGCTTTCGGTTTGTGGGAGATGGCGGCGGGGCCGACGGCGACG
ACATCAACGGCGGTCGCGGTCGTAGCCACGGCGGACGATGATGACGGGTG
CGGAGGTGTCGCCAAATTCTGTAGGGGCCGTGAGGAAGAGAGTTGCGGAG
CAGTACAAGAAGAAGCGGCGCGGCAAGGGGACAGGCAGTTTTGTCAAGTA
ATAGCAATGGGGGAAGAAGCGACCAACAGTGAAGAGCTGGGGACCAGGGG
TGCCCACACCGACGGTAGGAAATCACGAGGGCGACCCGCCGCTGGCGGCT
GCGGCGGCTGTGGCGGCTGCATTGGCTGGGATTGCTGCGGCAGGCAAACG
CTGGTAGGCTGAGTGAGGGACGCTGGCCTTCGATTGCACGGCCTTCGCTC
CCGCGAAACGGGACGATCAAGC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1346:758..4229+ >mRNA_P-wetherbeei_contig1346.2.2 ID=mRNA_P-wetherbeei_contig1346.2.2|Name=mRNA_P-wetherbeei_contig1346.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1695bp|location=Sequence derived from alignment at P-wetherbeei_contig1346:758..4229+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAAACCTGGTGCTGACCACGCTTGCAATTGCCTCCACCCCCAGTCT
AGTCGACGGTACGCCGTGTCTCGCACGACAGTGCGTCCTCCGGCTGCACG
CCGACGTGGACATTTGCTGTAGTCGCATTGATATTCCTCCCGTAACGATT
TGTTCTCGCTCCCATATTTTTTCTTCAGGTTTTGTTGGCGTGCCGCTGGC
GCTGCAGGGAGGTGCTGCGTCACGCACCACGCCGAGCGTATGCCGTATGG
CAAGCGGCGGCGAGGAGGGCGGGCGAAGCGTCAACGCTGCTGTCGCCGCG
GTCCTTGGCGCGGCTCTTGTCGCAACTAGCCCGCCCATGACCTCGCTGGC
CGGCGCCTTTATGCAACCGCCGGCCGCGTACGCCGCCGAAACGGTCGCAG
CCGACAGCGACCTCAAGAGCTTGCTCGGTGAGTTCAAGGAGGAGGTGCAG
TCGAAGGCAGCGGCACCGGTAAAGAAGGCAGCGCCGCCGGTCTCGCCAAA
GGCGGCGGCGCCCGCTCCCGCCGCCGTCAAGAAAGCGGCACCCGTGGCGC
CCAAGAAGGTGGCGGTGCCAGTCCCGTCTGCCGCGGCGTCTAAGGCGAGC
GTGGAGGCCGCAAAGAAGAAGGCAGCGGCGGAGGCGAACGCCCGGAAGAA
AACGGCGGCCGAGGCGGCCAAAAAGGCGGCAGATGCGGCCGAGAAGGCCA
AACGGGAGGAAGCACAGCGTGCCGAGACAGAAAGAAAGGCGCTCTTGGAG
AGGATCCAGGGGGCACGGGCGCGGATGGGAGTGCCACCGGTAGCGGGCAG
CCAGTCGGTCCGGACGGGCGTGTTCGCGGCGGGTGGCGGCGCCGGCTCGG
GTGCGGCGACGATCAAGACGCGCGAGGACACGGAGCTGGAGGCGACGCGA
AAGGAGCGGAGCGTGACGGAGGCGTCGGTGCGCGGCCTCAACAAGCTGCT
CGACTCGTCCAAGGCCAAGTTGAAGGAGACGACGAGCACCCTCGCGTCGA
ACGAACGCAAGCTGTCTGACATTGAGCGACAGCTGAAGCGCACTGAGAGT
CGCGCCGATGCCATCACGCTGGAGGGGTCCCGGCGGGAGGTGAAGGCGGC
CATCGCCGCGGGCAAGAAGACAGAGGCGGAGCTCAAGAAGACCATCGATA
AGGCAGAGCGCGACGTCAAGGCGAAGAGCAAGGACCTCAAAGGCATCAGC
AAGACCGAGGCCAAGCAGGCAAAGGCCGCTCAGGCAAAGCGGGAGACACT
GGTGAAGCAGGAGGTGGAGGCGCGGCAAAAGCGAATGGAGGCGGAGCGGG
CAGCGAGAGAAAAGGCGCAGCAGGCGGCGCGCGAGAAGGCGGCGGCCCAA
AAGGCCAAGGCCAAGGCCGCCGCGGAGGTGGCCGCCAAGGACGCTGCCGC
CAAGAAGAAAGCGTACGAGGGCGAGCTGGCGAAGCGGAAGGCGGAGGCGG
CGGCGCAGGAGCGGCAGGCGGAGCAGCGTCTCCAGCAGGAGGAGCAGCAG
CTGGCGCGGGAGCAGAAGAAAAAGGCGGAGGCCGACAAAAAGTCGACGGA
GCTGGCGGCCCAGGTAGCCAAGGACGCCGCGGCGAAGGCCAAGCTCCAGG
CCGCCGACGCGAAGCAGCTGGCCGCCGCCGAGGCCGCTGCCAAGGCCGCC
GAGGCCGAGGCGGCGCGCGCGGCCGCTCGCCTCAAGAGCCTCTGA back to top
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