prot_P-wetherbeei_contig1345.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1345.1.1
Unique Nameprot_P-wetherbeei_contig1345.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length485
Homology
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 8.720e-37
Identity = 94/231 (40.69%), Postives = 127/231 (54.98%), Query Frame = 0
Query:  283 AWVNAGVPGQHSVVRILGVDD-SVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTN------------------------QAVVQMDC------VQSAVHALIMTHNSSLKGHVLRVLFFNRSFH 482
            AW  AG   +  +V +  VD   V+P A C LFGLYGDVMKVK+    RGMALVQ+R+ VQA  A+  LD   L+G  +    S+Q  + D +A DF+ +  +HRF+  P+PED RY + L  PC TLVVDN+ PD  +E ++++ A HG VSS+D+D                            QA+V M+        ++AVHALIMTHN +L    LRV F +   H
Sbjct:  689 AWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKLV-ASRGMALVQMRYPVQAANAQRLLDQTPLSGMTIEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTASALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHH 918          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.170e-34
Identity = 94/239 (39.33%), Postives = 127/239 (53.14%), Query Frame = 0
Query:  283 AWVNAGVPGQHSVVRILGVDD-SVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHR--------FAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTN------------------------QAVVQMDC------VQSAVHALIMTHNSSLKGHVLRVLFFNRSFH 482
            AW  AG   +  +V +  VD   V+P A C LFGLYGDVMKVK+    RGMALVQ+R+ VQA  A+  LD   L+G  L    S+Q  + D +A DF+ +  +HR        F+  P+P+D RY + L  PC TLVVDN+ PD  +E ++++ A HG VSS+D+D                            QA+V M+        ++AVHALIMTHN +L    LRV F +   H
Sbjct:  907 AWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKIV-ASRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRQSCWDRFAFSTTPTPDDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGPVSSVDLDTHAKAPLDTISARASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGKHH 1144          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 111 bits (278), Expect = 8.970e-23
Identity = 80/180 (44.44%), Postives = 103/180 (57.22%), Query Frame = 0
Query:  291 GQHSVVRILGVDDS-VTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQAVVQMDCVQSAVHALIMTHNSSLKG 469
            G   +V +   D + V  E L  LFGLYGDV+KVKV    +  ALVQ  H +QA  A  FL+   LAG+ LR   ST   +KD+SA+DF+ +  VHR+ GV  P DP Y  +L  P   L V N+  +   E L AL    G VSS+ + A    A V+M  VQ+AVHALIMTH+  L+G
Sbjct:  309 GGSPLVLVQNADPAHVRGEHLAALFGLYGDVLKVKVMT-HKACALVQYAHPLQAANAMAFLNDTPLAGQTLRCVRSTSFEIKDQSASDFSAV-PVHRYRGVERPLDPAYQRNLVPPGPRLAVANVG-EATEEALRALYGRFGAVSSVAL-AGDGTATVEMSDVQTAVHALIMTHHHLLEG 484          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A7S2WBW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBW3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 7.660e-21
Identity = 76/204 (37.25%), Postives = 105/204 (51.47%), Query Frame = 0
Query:  281 AEAWVNAGVP------GQHSVVRILGVDDSV-TPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATL-VVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQAVVQMDCVQSAVHALIMTHNSSLKGHVLRVLF 476
            A+ W+ A +P      G   V+ +  VD +  T + L  LFG+YGDV+KVK+    R  AL+Q  +   A  AR  LDG  L GR L    S+Q  + D SAAD      + RF+   SP DP Y +HL  P  TL  + +   + P EEL  LLA    V+ +   +   + +VQ+  V++AV  +IMTH   L G VL V F
Sbjct:   53 AQTWLEA-LPEANTEDGCTRVLHVTNVDTNYCTTDMLAILFGVYGDVIKVKIL-SSREAALIQFAYPAMAFFARQHLDGCPLLGRNLAIAYSSQVGINDPSAADLTSRPTLRRFSATTSPSDPMYQDHLVPPTNTLKFLFHENKNAPDEELKKLLAKGCEVTEMKRISPA-EVLVQVASVEAAVSGIIMTHGQLLGGVVLSVCF 253          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: I2CQY0_NANGC (Polypyrimidine tract binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQY0_NANGC)

HSP 1 Score: 95.1 bits (235), Expect = 6.320e-18
Identity = 69/196 (35.20%), Postives = 104/196 (53.06%), Query Frame = 0
Query:  286 NAGVPGQHSVVRIL-GVD-DSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHV---SSLDVDAQTNQAVVQMDCVQSAVHALIMTHNSSLKGHVLRVLF 476
            +A +PG  + V I+ G++ + V  EAL  LFGLYGDV +VK+   ++  A+V++   VQA  A+  LD + L GR ++   STQ  ++D  A DF     +H +    SP  P YL +L  P A L + N+  D       +LL     V   + L   + T+ A+V    V++AVHA I+ HN  + G +L V F
Sbjct:  124 SARLPGTDTCVLIVQGLNMEMVGAEALAALFGLYGDVRRVKMMP-EQDSAIVEMERPVQAYVAKWLLDASPLGGRVIKVKSSTQDTIRDVQAQDFTAF-PLHGYRQYASPRHPSYLANLVEPTAVLRIANIDWDTSEITFRSLLTQQEGVMGVTRLLPSSHTSPALVSFQSVEAAVHACILLHNQEVDGRLLYVTF 317          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A7K6N6C3_PEDTO (PTBP3 protein (Fragment) n=1 Tax=Pedionomus torquatus TaxID=227192 RepID=A0A7K6N6C3_PEDTO)

HSP 1 Score: 90.9 bits (224), Expect = 6.810e-16
Identity = 69/200 (34.50%), Postives = 105/200 (52.50%), Query Frame = 0
Query:  288 GVPGQHSVVRILGVD-DSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAV-------KDRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLD--VDAQTNQAVVQMDCVQSAVHALIMTHNSSL-KGHVLRVLF 476
            GVPG +SV+ +  ++ +++TP+ L  LFG+YGDV +VK+    +G ALVQ+  A QA  A ++L+G  L G+ LR   S   AV       KD+          +HRF    S    +  +++  P ATL + N+PP    ++L  L +  G        +      A++Q+ CV+ A+HALI  HN  L + H LRV F
Sbjct:  283 GVPG-NSVLLVSNLNPEAITPDGLFILFGVYGDVHRVKIMFKKKGNALVQMADATQAQLAINYLNGQRLYGKVLRTTFSKHHAVQLPCGRQKDQGLTKDYSNSPLHRFRRPGS----KNFQNIFPPSATLHLANIPPSVTVDDLKKLFSNVGSTVKAFRFLQKDCRMALIQLGCVEEALHALIELHNYDLGENHHLRVSF 477          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A3B3H543_ORYLA (Polypyrimidine tract-binding protein 1 n=16 Tax=Oryzias TaxID=8089 RepID=A0A3B3H543_ORYLA)

HSP 1 Score: 88.2 bits (217), Expect = 6.670e-15
Identity = 69/203 (33.99%), Postives = 99/203 (48.77%), Query Frame = 0
Query:  289 VPGQHSVVRILGVD-DSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVK-------DRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQ--AVVQMDCVQSAVHALIMTHNSSL-KGHVLRVLFFNRS 480
            +P  HSVV +  ++ + VTP  L  LFG+YGDVM+VK+    +  ALVQ+  + QA  A   L+G  L GR LR  +S   +V+       D+          +HRF     P    Y  ++  P ATL + N+PP    ++L  L +  G V       Q +   A++QM  V+ A+  LI  HN  L + H LRV F   S
Sbjct:  363 IPAGHSVVLVSNLNAERVTPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQRLHGRPLRITLSKHTSVQLPREGHEDQGLTKDYSSSPLHRFK---KPGSKNY-SNIFPPSATLHLSNIPPSVVEDDLKMLFSSSGAVVKAFKFFQKDHKMALIQMGSVEEAIECLIQLHNHDLGENHHLRVSFSKSS 561          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A3B3BKS6_ORYME (Polypyrimidine tract-binding protein 1-like n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BKS6_ORYME)

HSP 1 Score: 87.4 bits (215), Expect = 6.740e-15
Identity = 69/203 (33.99%), Postives = 98/203 (48.28%), Query Frame = 0
Query:  289 VPGQHSVVRILGVDDSV-TPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVK-------DRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQ--AVVQMDCVQSAVHALIMTHNSSL-KGHVLRVLFFNRS 480
            +P  HSV+ +  ++  V TP  L  LFG+YGDVM+VK+    +  ALVQ+  + QA  A   L+G  L GR LR  +S   +V+       D+          +HRF     P    Y  ++  P ATL + N+PP    E+L  L +  G V       Q +   A++QM  V+ A+  LI  HN  L + H LRV F   S
Sbjct:  224 IPAGHSVLLVSNLNPEVITPHCLFILFGVYGDVMRVKILFNKKENALVQMSDSTQAQLAMSHLNGQRLHGRPLRITLSKHTSVQLPREGHEDQGLTKDYSSSPLHRFK---KPGSKNY-SNIFPPSATLHLSNIPPSVVEEDLKMLFSSSGAVVKAFKFFQKDHKMALIQMGSVEEAIECLIQLHNHDLGENHHLRVSFSKSS 422          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: W5M0R2_LEPOC (Polypyrimidine tract-binding protein 1 n=25 Tax=Actinopterygii TaxID=7898 RepID=W5M0R2_LEPOC)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-14
Identity = 67/200 (33.50%), Postives = 100/200 (50.00%), Query Frame = 0
Query:  288 GVPGQHSVVRILGVD-DSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVK-------DRSAADFARLHQVHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQ--AVVQMDCVQSAVHALIMTHNSSL-KGHVLRVLF 476
            G+ G HSV+ +  ++ + VTP+ L  LFG+YGDVM+VK+    +  ALVQ+    QA  A   L+G  L G+ +R  +S    V+       D+          +HRF     P    Y +++  P ATL + N+PP    ++L  L A  G V       Q ++  A++QM  V+ A+  LI  HN  L + H LRV F
Sbjct:  368 GLAGGHSVLLVSNLNAERVTPQCLFILFGVYGDVMRVKILFNKKENALVQMADGTQAQLAMSHLNGQKLHGKAIRVTLSKHTTVQLPREGQEDQGLTKDFSSSPLHRFK---KPGSKNY-QNIFPPSATLHLSNIPPSVVEDDLKMLFASSGAVVKAFKFFQKDRKMALIQMGSVEEAIQCLIEYHNHDLGENHHLRVSF 563          
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Match: A0A091VSQ8_NIPNI (Polypyrimidine tract-binding protein 3 (Fragment) n=3 Tax=Nipponia nippon TaxID=128390 RepID=A0A091VSQ8_NIPNI)

HSP 1 Score: 87.0 bits (214), Expect = 1.350e-14
Identity = 72/201 (35.82%), Postives = 106/201 (52.74%), Query Frame = 0
Query:  287 AGVPGQHSVVRILGVD-DSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFLDGALLAGRRLRADVSTQAAVK-DRSAADFARLHQ------VHRFAGVPSPEDPRYLEHLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTN--QAVVQMDCVQSAVHALIMTHNSSL-KGHVLRVLF 476
            +GVPG +SV+ +  ++ +++TP  L  LFG+YGDV +VK+    +  ALVQ+  A QA  A   L+G  L GR LRA +S    V+  R   +   L +      +HRF    S    +  +++  P ATL + N+PP    ++L  L A  G         QT+   A++Q+  V+  VHALIM HN  L + H LRV F
Sbjct:  308 SGVPG-NSVLLVSNLNPEAITPHGLFILFGVYGDVHRVKIMFKKKENALVQMADATQAQLAISNLNGQRLYGRVLRATLSKHQTVQLPREGQEGQGLTKDYSNSPLHRFKKPGS----KNFQNIFPPSATLHLSNIPPSVSVDDLKKLFASTGSTVKAFRFFQTDCKMALIQLGSVEEGVHALIMLHNHDLGENHHLRVSF 503          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1345.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN53_ECTSI8.720e-3740.69PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=... [more]
A0A6H5KZ42_9PHAE2.170e-3439.33RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UWL0_HETAK8.970e-2344.44Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WBW3_9STRA7.660e-2137.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQY0_NANGC6.320e-1835.20Polypyrimidine tract binding protein n=1 Tax=Nanno... [more]
A0A7K6N6C3_PEDTO6.810e-1634.50PTBP3 protein (Fragment) n=1 Tax=Pedionomus torqua... [more]
A0A3B3H543_ORYLA6.670e-1533.99Polypyrimidine tract-binding protein 1 n=16 Tax=Or... [more]
A0A3B3BKS6_ORYME6.740e-1533.99Polypyrimidine tract-binding protein 1-like n=1 Ta... [more]
W5M0R2_LEPOC1.200e-1433.50Polypyrimidine tract-binding protein 1 n=25 Tax=Ac... [more]
A0A091VSQ8_NIPNI1.350e-1435.82Polypyrimidine tract-binding protein 3 (Fragment) ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 295..363
e-value: 1.9E-8
score: 44.1
coord: 408..475
e-value: 1.7E-7
score: 40.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 409..473
e-value: 1.6E-5
score: 24.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 407..479
score: 9.251588
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 294..367
score: 12.509169
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 398..479
e-value: 6.4E-12
score: 47.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 291..381
e-value: 1.4E-15
score: 59.2
NoneNo IPR availablePFAMPF13893RRM_5coord: 283..373
e-value: 2.5E-13
score: 49.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..279
NoneNo IPR availablePANTHERPTHR23189RNA RECOGNITION MOTIF-CONTAININGcoord: 201..470
NoneNo IPR availablePANTHERPTHR23189:SF79HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L2coord: 201..470
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 295..477

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1345contigP-wetherbeei_contig1345:3457..6704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1345.1.1mRNA_P-wetherbeei_contig1345.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1345 3110..6967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1345.1.1 ID=prot_P-wetherbeei_contig1345.1.1|Name=mRNA_P-wetherbeei_contig1345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=485bp
MGCFGGVGVTQQDEPPPAPAFQEAQPSYGYAGMPSMAPLPYASYGGAGGG
THAAGDDGGYAGASSGSCGGKYGAANDVTGYVEGPRGRGGYPVMPAPGAE
GAGLPPRWIGLANVPPPDSEGVFGPSVLLYPPQFEDFVAATAAKGAAILA
ESTETDHLADTTAEVSVRDNDDAAAASPPTSAAAIAAASAASASEARAEV
ELAEPAERSGGRATVASETDPPEAEGEVAVRTAVASVAAGAGSSDGKEEM
EADPELEPGLDSVGAAMSSSQADSDAEADAAEAWVNAGVPGQHSVVRILG
VDDSVTPEALCQLFGLYGDVMKVKVTRGDRGMALVQLRHAVQADKARHFL
DGALLAGRRLRADVSTQAAVKDRSAADFARLHQVHRFAGVPSPEDPRYLE
HLCAPCATLVVDNLPPDCPSEELSALLAPHGHVSSLDVDAQTNQAVVQMD
CVQSAVHALIMTHNSSLKGHVLRVLFFNRSFHGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf