mRNA_P-wetherbeei_contig13448.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13448.1.1
Unique NamemRNA_P-wetherbeei_contig13448.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13448.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13448contigP-wetherbeei_contig13448:48..1838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1699
Hectar predicted targeting categoryother localisation
Exons2
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.8461185-UTR-P-wetherbeei_contig13448:47..5871683185985.8461185-UTR-P-wetherbeei_contig13448:47..587Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13448 48..587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.856072-CDS-P-wetherbeei_contig13448:587..9721683185985.856072-CDS-P-wetherbeei_contig13448:587..972Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13448 588..972 +
1683185985.8648667-CDS-P-wetherbeei_contig13448:1065..18381683185985.8648667-CDS-P-wetherbeei_contig13448:1065..1838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13448 1066..1838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13448.1.1prot_P-wetherbeei_contig13448.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13448 588..1838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13448.1.1

>prot_P-wetherbeei_contig13448.1.1 ID=prot_P-wetherbeei_contig13448.1.1|Name=mRNA_P-wetherbeei_contig13448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MEEAAALARKEEWARFYKEQELCMIAELDAPTTAERLFPLVRTHVQLQQF
VTLVAAWQHQRCLGDDESKLFTKRVLEVAARFVPVCRDSYAVFMVALDRA
RNLEIIDAHEYYAMSGDAHVERVKNADFVKEMQDEIKQIAGKTYDLEEAL
FVFWSALEDLRKAHQAQLRAQAIAGLFKAVVNVLSLGAGGAVLDSAVAIA
LSQIVDIGDIEAAKKLLEVGCVAGFDAVAVLEEATGADNLKDLIFCGVDT
WAGGVGDNALDKAAKEKIAVKLVAVAAAAVNVQPATDREGALPPLPEQTE
LAPLEAAVDGSSAILERSLLAAVNANSAHSGEADFFDAAFSDESIEAALA
QCNLTRLTSVLVEHGFTTRGVLEELSAFGREEFLRC
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mRNA from alignment at P-wetherbeei_contig13448:48..1838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13448.1.1 ID=mRNA_P-wetherbeei_contig13448.1.1|Name=mRNA_P-wetherbeei_contig13448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig13448:48..1838+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGGACGCCCCTCCCCCCTCCCCCCCTGAGCTGAATCAGCTAAGGAAC
CTCCAGATTCTCAATCACGAAACCAGCTCGAAGTTGATCCTTGGAATTCG
ACAGAATCGGAACAATAAGTGGACGCATCCCCAAGCTGCGTCCAATTCTC
CAATGCCGTGAACTTGTCAATCCTTTCGTCCCCCATTCCCGCGCATTTGC
CCAAAATGGCTAGGGGAAATCCCTCCAGAGCTGGGGCTTTTGCGATACTT
ACGAGTGCTGGATTTGACAAATAATCTGCTCACTGGTGAGTCATGCAACC
GTATTTGTTAAGGCCCAGGGATCGGCATAGCGTCATCATTTTGCCTCGTA
AGCGATAACTTCGAAAGCCTTTGCTTTGGAATCGCACGTGTTGCCACAGA
GAGTCCGACAAAGCGTCTCGATGGCGAGGGGTTTGTAAATCAGCTGGCGC
GGTTTCGCTCAAAAGAAGCTCTCCAAGAGGCTGAGCTCTCCGGCCTATCA
GCTGGAACTGCGCAGGCGGGACGAGCTACGTCGGCGATCCATGGAAGAAG
CTGCCGCACTCGCGCGGAAGGAGGAATGGGCCCGCTTCTACAAGGAGCAA
GAGCTCTGCATGATCGCAGAGCTCGATGCTCCCACGACAGCGGAGCGCCT
GTTTCCTCTTGTAAGAACCCACGTGCAGTTACAGCAGTTTGTAACGCTTG
TGGCGGCTTGGCAACACCAGCGGTGCCTGGGCGACGACGAGAGCAAGCTG
TTCACGAAGAGGGTACTGGAGGTCGCTGCCCGGTTCGTCCCCGTGTGCCG
CGACAGTTACGCCGTGTTCATGGTTGCACTTGATCGGGCACGGAACCTGG
AGATCATTGACGCACATGAATATTATGCCATGAGTGGCGACGCTCACGTC
GAACGGGTCAAGAACGCCGATTTTGGTAAGTCGGCTGCGCCATCCTCCTT
CAATGCCATGCCGCTTTGGTCTTCTGACCTCAAATGTTCCGAACCTGCCG
GCCCCTTGCTTCCCCCAGTGAAGGAAATGCAGGACGAAATCAAGCAGATT
GCAGGGAAAACCTATGATCTCGAGGAGGCGCTCTTCGTGTTCTGGAGTGC
GCTGGAGGACCTGAGGAAGGCACACCAAGCGCAACTGAGAGCCCAGGCCA
TCGCGGGCCTTTTCAAAGCCGTTGTGAACGTGCTATCTCTTGGCGCGGGT
GGTGCCGTGCTGGACAGCGCTGTTGCCATCGCCCTCAGCCAAATCGTGGA
TATCGGCGACATAGAGGCGGCAAAAAAGCTCTTAGAGGTGGGCTGTGTCG
CGGGCTTTGACGCCGTTGCTGTGTTGGAAGAAGCGACGGGAGCAGATAAC
CTGAAAGATTTAATATTTTGCGGTGTGGACACGTGGGCTGGTGGCGTGGG
AGATAATGCGCTCGACAAGGCTGCGAAAGAGAAGATCGCGGTAAAGCTCG
TGGCAGTAGCGGCAGCGGCCGTGAACGTACAGCCCGCCACTGACCGCGAG
GGTGCGCTGCCGCCACTGCCGGAGCAGACAGAGCTGGCTCCGTTAGAAGC
GGCAGTTGACGGTTCGAGTGCTATCTTGGAGAGATCTTTGCTTGCCGCAG
TCAATGCGAACTCTGCACATTCCGGTGAAGCGGATTTCTTCGATGCTGCG
TTCAGTGACGAAAGTATCGAAGCGGCGCTGGCGCAGTGCAATCTGACCCG
CTTGACCTCAGTTTTGGTCGAGCACGGTTTCACCACGAGAGGCGTGCTGG
AAGAGCTGTCAGCCTTCGGGAGGGAGGAATTCTTGCGATGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13448:48..1838+

>mRNA_P-wetherbeei_contig13448.1.1 ID=mRNA_P-wetherbeei_contig13448.1.1|Name=mRNA_P-wetherbeei_contig13448.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig13448:48..1838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGAAGCTGCCGCACTCGCGCGGAAGGAGGAATGGGCCCGCTTCTA
CAAGGAGCAAGAGCTCTGCATGATCGCAGAGCTCGATGCTCCCACGACAG
CGGAGCGCCTGTTTCCTCTTGTAAGAACCCACGTGCAGTTACAGCAGTTT
GTAACGCTTGTGGCGGCTTGGCAACACCAGCGGTGCCTGGGCGACGACGA
GAGCAAGCTGTTCACGAAGAGGGTACTGGAGGTCGCTGCCCGGTTCGTCC
CCGTGTGCCGCGACAGTTACGCCGTGTTCATGGTTGCACTTGATCGGGCA
CGGAACCTGGAGATCATTGACGCACATGAATATTATGCCATGAGTGGCGA
CGCTCACGTCGAACGGGTCAAGAACGCCGATTTTGTGAAGGAAATGCAGG
ACGAAATCAAGCAGATTGCAGGGAAAACCTATGATCTCGAGGAGGCGCTC
TTCGTGTTCTGGAGTGCGCTGGAGGACCTGAGGAAGGCACACCAAGCGCA
ACTGAGAGCCCAGGCCATCGCGGGCCTTTTCAAAGCCGTTGTGAACGTGC
TATCTCTTGGCGCGGGTGGTGCCGTGCTGGACAGCGCTGTTGCCATCGCC
CTCAGCCAAATCGTGGATATCGGCGACATAGAGGCGGCAAAAAAGCTCTT
AGAGGTGGGCTGTGTCGCGGGCTTTGACGCCGTTGCTGTGTTGGAAGAAG
CGACGGGAGCAGATAACCTGAAAGATTTAATATTTTGCGGTGTGGACACG
TGGGCTGGTGGCGTGGGAGATAATGCGCTCGACAAGGCTGCGAAAGAGAA
GATCGCGGTAAAGCTCGTGGCAGTAGCGGCAGCGGCCGTGAACGTACAGC
CCGCCACTGACCGCGAGGGTGCGCTGCCGCCACTGCCGGAGCAGACAGAG
CTGGCTCCGTTAGAAGCGGCAGTTGACGGTTCGAGTGCTATCTTGGAGAG
ATCTTTGCTTGCCGCAGTCAATGCGAACTCTGCACATTCCGGTGAAGCGG
ATTTCTTCGATGCTGCGTTCAGTGACGAAAGTATCGAAGCGGCGCTGGCG
CAGTGCAATCTGACCCGCTTGACCTCAGTTTTGGTCGAGCACGGTTTCAC
CACGAGAGGCGTGCTGGAAGAGCTGTCAGCCTTCGGGAGGGAGGAATTCT
TGCGATGT
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