prot_P-wetherbeei_contig13446.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig13446.2.1
Unique Nameprot_P-wetherbeei_contig13446.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length158
Homology
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A6N7GUV1_9HYPH (FCD domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUV1_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 5.890e-35
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 0
Query:    7 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 147
            ++S V+R++ +I   ++ GR APGQRLIE ELQ  +  SR  VRE +R+LAA+ ++++ LHKGAR+R+L   E+ ++YD+REVLEGLAARLAAQ+   P    Q+ A+E  +DR  DG+ R Y+ YNE FHR I+  S  T
Sbjct:   23 DSSAVERVIGYIISGIRDGRFAPGQRLIEGELQAMLQVSRGPVREAVRRLAAENILQLELHKGARLRQLTPEEINAIYDVREVLEGLAARLAAQNASFP--DDQLQALEREFDRRFDGTTRHYLAYNEEFHRLIVRSSGNT 161          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A0X3SB20_9ACTN (HTH gntR-type domain-containing protein n=1 Tax=Streptomyces sp. NRRL F-5122 TaxID=1609098 RepID=A0A0X3SB20_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 7.040e-31
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 0
Query:    9 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 147
            S VDR++  ++  ++ GR APGQRL+E++L + +   R+++RE L +L++DGL+ I  H+GA VRRL RTEVE LY++REVLEGLAARLAA H+  P  R ++ AA++A  + A       Y+  N  FHR ++++S  T
Sbjct:   24 SAVDRVVATVRSGVRDGRFAPGQRLVEADLMRELGIGRNTLREALSRLSSDGLVTIAPHRGASVRRLTRTEVEQLYELREVLEGLAARLAALHINTPGHRDRLLAALDAVQETARTAEMPQYIDENLRFHRTVVEMSGHT 163          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI001B272EA0 (GntR family transcriptional regulator n=1 Tax=Streptomyces sp. NEAU-YJ-81 TaxID=2820288 RepID=UPI001B272EA0)

HSP 1 Score: 108 bits (271), Expect = 1.590e-26
Identity = 58/139 (41.73%), Postives = 94/139 (67.63%), Query Frame = 0
Query:    8 ASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSA 145
            +S V+R++  +++ +K GR  PGQRL+E++L + +   R+++RE L +L +DG ++I  H+GA +RRL R +V  LY++REVLEGLA+RLAA+ +     R ++ AA+E+ ++ A       YM  N  FHR I++LSA
Sbjct:   10 SSAVERVVATVREGVKSGRYVPGQRLVEADLMRELGVGRNALREALSRLRSDGFVQIEAHRGASIRRLTREDVAQLYELREVLEGLASRLAAERIDETDHRDRLSAALESMHEVARTAELPTYMDENIHFHRTIVELSA 148          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI002009FA9F (GntR family transcriptional regulator n=1 Tax=Rhodococcus sp. HM1 TaxID=2937759 RepID=UPI002009FA9F)

HSP 1 Score: 107 bits (266), Expect = 7.700e-26
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 0
Query:    9 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 144
            + V R +  I++ ++ GR  PGQRLIE +L Q +   R+++RE L +L +DGL+++  H+GA +RRL R +V   Y +REVLEGL+ARLAAQ++ AP  R++V +AI+ +   A  G    Y   N  FHR I++LS
Sbjct:   10 TAVQRAVEAIREGVRVGRFVPGQRLIEPDLMQELGVGRNALREALAQLGSDGLVKLEPHRGASIRRLTREDVAHFYQVREVLEGLSARLAAQNIDAPGHRERVLSAIDKSRSIAAAGDQPTYFDENFRFHRIIVELS 146          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A437JAM5_9SPHN (GntR family transcriptional regulator n=1 Tax=Sphingobium algorifonticola TaxID=2008318 RepID=A0A437JAM5_9SPHN)

HSP 1 Score: 104 bits (259), Expect = 9.750e-25
Identity = 59/140 (42.14%), Postives = 91/140 (65.00%), Query Frame = 0
Query:    7 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVA--AIEAAYDRADDGSARAYMGYNEAFHRAILDLS 144
            N STV+ I   +++D++ GRLAP QRL+E++L  A+  SR  +RE  R+LA++GL+E+  H+GA+VR+L + E+ +L+ +REVLEGL+ARLAA  +++ A         + A     DDG   AY   N+ FH  I+ +S
Sbjct:   17 NVSTVEAITDRLREDIRSGRLAPSQRLVEADLTVALGVSRGPLREAFRRLASEGLLELQHHRGAKVRQLSKAEIIALFQVREVLEGLSARLAAMAVQSGACDSAPLDDLVNAMNVALDDGRIGAYREKNQQFHDLIMAMS 156          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2C8ZXL6_9BURK (Transcriptional regulator, GntR family n=1 Tax=Burkholderia sp. D7 TaxID=1873884 RepID=A0A2C8ZXL6_9BURK)

HSP 1 Score: 99.8 bits (247), Expect = 5.290e-23
Identity = 53/143 (37.06%), Postives = 91/143 (63.64%), Query Frame = 0
Query:    7 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA--YMGYNEAFHRAILDLSART 147
            + STV+ +M HI++ ++ G+ A G R++E+EL++ +  SR S+RE + +LAA+GL+E++LH+GA VR L   E+  L +IREV+EGLAAR AA  +    + +++  ++   D A+D +     Y   N  +H  +L++   T
Sbjct:    9 DVSTVEFVMSHIREGVRSGKFAVGSRIVEAELRRILGVSRGSIREAVSRLAAEGLLEVNLHRGASVRALSPEEIRDLLEIREVVEGLAARKAASRIGIADYAERLRLVQKRLDAAEDNAEDPDDYFRANADYHSLLLEIGGNT 151          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A853GPW2_9BURK (GntR family transcriptional regulator n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853GPW2_9BURK)

HSP 1 Score: 100 bits (248), Expect = 6.290e-23
Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 0
Query:    7 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSA-------RAYMGYNEAFHRAILDLSARTSCSI 151
            +  TV+R+ +H+K+ +  G L PGQRL+  +L + +  SR S+RE  R+LA + L+E+  ++GA VRRL   EV SL+ IRE LEG AARLAA H+     R+   AI        +G A       +A+M +N AFH+AI+ +S  T  ++
Sbjct:   16 SGDTVERVANHLKEQILEGSLVPGQRLVSRDLMEHLGVSRGSLREAFRRLAGERLVELIPNRGAIVRRLSAAEVVSLFQIREALEGQAARLAADHINEADNRRVFQAI------VKEGEALRRSMNMQAFMIHNRAFHQAIVKISGNTELAL 161          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2W4SYN0_9PROT (HTH gntR-type domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4SYN0_9PROT)

HSP 1 Score: 101 bits (251), Expect = 1.340e-22
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    9 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGS-ARAYMGYNEAFHRAILDLS 144
            + V+RI+  I+  +K GR APGQRLIES+L QA+  SR  +RE + +LA DGL++I  ++G  VR L R EV S+  IREVLEGLAARLAA H+   + R++   +          S A  Y+  NE FH  I+ LS
Sbjct:  139 TAVERIVEEIRRGIKEGRYAPGQRLIESDLTQALGVSRGPLREAMSRLAGDGLVKIERNRGVTVRALTREEVRSISTIREVLEGLAARLAAAHIHEGSNREEFKRLWNEMQSVQVSSNAMEYVVANERFHTLIVRLS 275          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A380WBA1_AFIFE (Uncharacterized HTH-type transcriptional regulator ydfH n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A380WBA1_AFIFE)

HSP 1 Score: 98.2 bits (243), Expect = 2.580e-22
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 0
Query:    1 EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA---YMGYNEAFHRAILDL 143
            E+       TVD I+  +++ +  GR+ PGQRL+ ++L + +  SR S+RE L++L+A+GL++I  ++GA VRRL R +V  L+ IR  LEGL ARLAA+H+     RKQ  A+    +   DGS RA   +M  N  +HR I+ +
Sbjct:    9 EEVSQRRGQTVDDIIGRVRNAILAGRIVPGQRLVANDLVEQLGVSRGSIREALQRLSAEGLVDITPNRGAMVRRLSREQVRDLFQIRINLEGLGARLAAEHIHEADHRKQFLAVW--NEVKPDGSERAWSLFMQQNRLYHRTIVSI 152          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A556AJ14_9BURK (GntR family transcriptional regulator n=2 Tax=Verticiella sediminum TaxID=1247510 RepID=A0A556AJ14_9BURK)

HSP 1 Score: 98.6 bits (244), Expect = 2.760e-22
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 0
Query:   11 VDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 144
            +DRI   I D    GR APGQRLIE++L + + ASR SVRE LR+L A+G++++  ++GA VR+L R +   L+ +RE LEGLAAR+AA+ + A    +   A  AA   ADD  A A+   N   H+ I+D S
Sbjct:   43 IDRIREAIVD----GRYAPGQRLIEADLMRELQASRGSVREALRRLGAEGIVDLVPNRGAVVRKLSRKDFCDLFRMREALEGLAARMAAERVAAHGLAEPFLAAAAATAEADDQGAAAFSRQNRTLHQLIVDFS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GUV1_9HYPH5.890e-3549.65FCD domain-containing protein n=1 Tax=Hyphomicrobi... [more]
A0A0X3SB20_9ACTN7.040e-3145.71HTH gntR-type domain-containing protein n=1 Tax=St... [more]
UPI001B272EA01.590e-2641.73GntR family transcriptional regulator n=1 Tax=Stre... [more]
UPI002009FA9F7.700e-2643.80GntR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A437JAM5_9SPHN9.750e-2542.14GntR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A2C8ZXL6_9BURK5.290e-2337.06Transcriptional regulator, GntR family n=1 Tax=Bur... [more]
A0A853GPW2_9BURK6.290e-2340.13GntR family transcriptional regulator n=1 Tax=Alca... [more]
A0A2W4SYN0_9PROT1.340e-2245.99HTH gntR-type domain-containing protein n=1 Tax=Pr... [more]
A0A380WBA1_AFIFE2.580e-2240.41Uncharacterized HTH-type transcriptional regulator... [more]
A0A556AJ14_9BURK2.760e-2244.78GntR family transcriptional regulator n=2 Tax=Vert... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000524Transcription regulator HTH, GntRSMARTSM00345gntr3coord: 14..72
e-value: 1.3E-9
score: 47.9
IPR000524Transcription regulator HTH, GntRPFAMPF00392GntRcoord: 11..72
e-value: 6.4E-13
score: 48.2
IPR000524Transcription regulator HTH, GntRPROSITEPS50949HTH_GNTRcoord: 8..75
score: 16.474968
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..74
e-value: 1.4E-16
score: 62.0
IPR008920Transcription regulator FadR/GntR, C-terminalGENE3D1.20.120.530coord: 75..150
e-value: 6.8E-13
score: 51.1
IPR008920Transcription regulator FadR/GntR, C-terminalSUPERFAMILY48008GntR ligand-binding domain-likecoord: 79..144
IPR011711GntR, C-terminalPFAMPF07729FCDcoord: 83..146
e-value: 6.2E-10
score: 39.6
NoneNo IPR availablePANTHERPTHR43537TRANSCRIPTIONAL REGULATOR, GNTR FAMILYcoord: 8..146
NoneNo IPR availablePANTHERPTHR43537:SF24HTH-TYPE TRANSCRIPTIONAL REGULATOR LGOR-RELATEDcoord: 8..146
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 7..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13446contigP-wetherbeei_contig13446:1119..1592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13446.2.1mRNA_P-wetherbeei_contig13446.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig13446 1119..1592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig13446.2.1 ID=prot_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVR
EDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQ
HMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLSARTSCS
ICCTTWR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000524Tscrpt_reg_HTH_GntR
IPR036388WH-like_DNA-bd_sf
IPR008920TF_FadR/GntR_C
IPR011711GntR_C
IPR036390WH_DNA-bd_sf