mRNA_P-wetherbeei_contig13446.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13446.2.1
Unique NamemRNA_P-wetherbeei_contig13446.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A6N7GUV1_9HYPH (FCD domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GUV1_9HYPH)

HSP 1 Score: 130 bits (328), Expect = 5.890e-35
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 441
            ++S V+R++ +I   ++ GR APGQRLIE ELQ  +  SR  VRE +R+LAA+ ++++ LHKGAR+R+L   E+ ++YD+REVLEGLAARLAAQ+   P    Q+ A+E  +DR  DG+ R Y+ YNE FHR I+  S  T
Sbjct:   23 DSSAVERVIGYIISGIRDGRFAPGQRLIEGELQAMLQVSRGPVREAVRRLAAENILQLELHKGARLRQLTPEEINAIYDVREVLEGLAARLAAQNASFP--DDQLQALEREFDRRFDGTTRHYLAYNEEFHRLIVRSSGNT 161          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A0X3SB20_9ACTN (HTH gntR-type domain-containing protein n=1 Tax=Streptomyces sp. NRRL F-5122 TaxID=1609098 RepID=A0A0X3SB20_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 7.040e-31
Identity = 64/140 (45.71%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSART 441
            S VDR++  ++  ++ GR APGQRL+E++L + +   R+++RE L +L++DGL+ I  H+GA VRRL RTEVE LY++REVLEGLAARLAA H+  P  R ++ AA++A  + A       Y+  N  FHR ++++S  T
Sbjct:   24 SAVDRVVATVRSGVRDGRFAPGQRLVEADLMRELGIGRNTLREALSRLSSDGLVTIAPHRGASVRRLTRTEVEQLYELREVLEGLAARLAALHINTPGHRDRLLAALDAVQETARTAEMPQYIDENLRFHRTVVEMSGHT 163          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI001B272EA0 (GntR family transcriptional regulator n=1 Tax=Streptomyces sp. NEAU-YJ-81 TaxID=2820288 RepID=UPI001B272EA0)

HSP 1 Score: 108 bits (271), Expect = 1.590e-26
Identity = 58/139 (41.73%), Postives = 94/139 (67.63%), Query Frame = 1
Query:   22 ASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLSA 435
            +S V+R++  +++ +K GR  PGQRL+E++L + +   R+++RE L +L +DG ++I  H+GA +RRL R +V  LY++REVLEGLA+RLAA+ +     R ++ AA+E+ ++ A       YM  N  FHR I++LSA
Sbjct:   10 SSAVERVVATVREGVKSGRYVPGQRLVEADLMRELGVGRNALREALSRLRSDGFVQIEAHRGASIRRLTREDVAQLYELREVLEGLASRLAAERIDETDHRDRLSAALESMHEVARTAELPTYMDENIHFHRTIVELSA 148          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: UPI002009FA9F (GntR family transcriptional regulator n=1 Tax=Rhodococcus sp. HM1 TaxID=2937759 RepID=UPI002009FA9F)

HSP 1 Score: 107 bits (266), Expect = 7.700e-26
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQV-AAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
            + V R +  I++ ++ GR  PGQRLIE +L Q +   R+++RE L +L +DGL+++  H+GA +RRL R +V   Y +REVLEGL+ARLAAQ++ AP  R++V +AI+ +   A  G    Y   N  FHR I++LS
Sbjct:   10 TAVQRAVEAIREGVRVGRFVPGQRLIEPDLMQELGVGRNALREALAQLGSDGLVKLEPHRGASIRRLTREDVAHFYQVREVLEGLSARLAAQNIDAPGHRERVLSAIDKSRSIAAAGDQPTYFDENFRFHRIIVELS 146          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A437JAM5_9SPHN (GntR family transcriptional regulator n=1 Tax=Sphingobium algorifonticola TaxID=2008318 RepID=A0A437JAM5_9SPHN)

HSP 1 Score: 104 bits (259), Expect = 9.750e-25
Identity = 59/140 (42.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query:   19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVA--AIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
            N STV+ I   +++D++ GRLAP QRL+E++L  A+  SR  +RE  R+LA++GL+E+  H+GA+VR+L + E+ +L+ +REVLEGL+ARLAA  +++ A         + A     DDG   AY   N+ FH  I+ +S
Sbjct:   17 NVSTVEAITDRLREDIRSGRLAPSQRLVEADLTVALGVSRGPLREAFRRLASEGLLELQHHRGAKVRQLSKAEIIALFQVREVLEGLSARLAAMAVQSGACDSAPLDDLVNAMNVALDDGRIGAYREKNQQFHDLIMAMS 156          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2C8ZXL6_9BURK (Transcriptional regulator, GntR family n=1 Tax=Burkholderia sp. D7 TaxID=1873884 RepID=A0A2C8ZXL6_9BURK)

HSP 1 Score: 99.8 bits (247), Expect = 5.290e-23
Identity = 53/143 (37.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA--YMGYNEAFHRAILDLSART 441
            + STV+ +M HI++ ++ G+ A G R++E+EL++ +  SR S+RE + +LAA+GL+E++LH+GA VR L   E+  L +IREV+EGLAAR AA  +    + +++  ++   D A+D +     Y   N  +H  +L++   T
Sbjct:    9 DVSTVEFVMSHIREGVRSGKFAVGSRIVEAELRRILGVSRGSIREAVSRLAAEGLLEVNLHRGASVRALSPEEIRDLLEIREVVEGLAARKAASRIGIADYAERLRLVQKRLDAAEDNAEDPDDYFRANADYHSLLLEIGGNT 151          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A853GPW2_9BURK (GntR family transcriptional regulator n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A853GPW2_9BURK)

HSP 1 Score: 100 bits (248), Expect = 6.290e-23
Identity = 61/152 (40.13%), Postives = 91/152 (59.87%), Query Frame = 1
Query:   19 NASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSA-------RAYMGYNEAFHRAILDLSARTSCSI 453
            +  TV+R+ +H+K+ +  G L PGQRL+  +L + +  SR S+RE  R+LA + L+E+  ++GA VRRL   EV SL+ IRE LEG AARLAA H+     R+   AI        +G A       +A+M +N AFH+AI+ +S  T  ++
Sbjct:   16 SGDTVERVANHLKEQILEGSLVPGQRLVSRDLMEHLGVSRGSLREAFRRLAGERLVELIPNRGAIVRRLSAAEVVSLFQIREALEGQAARLAADHINEADNRRVFQAI------VKEGEALRRSMNMQAFMIHNRAFHQAIVKISGNTELAL 161          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A2W4SYN0_9PROT (HTH gntR-type domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4SYN0_9PROT)

HSP 1 Score: 101 bits (251), Expect = 1.340e-22
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   25 STVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGS-ARAYMGYNEAFHRAILDLS 432
            + V+RI+  I+  +K GR APGQRLIES+L QA+  SR  +RE + +LA DGL++I  ++G  VR L R EV S+  IREVLEGLAARLAA H+   + R++   +          S A  Y+  NE FH  I+ LS
Sbjct:  139 TAVERIVEEIRRGIKEGRYAPGQRLIESDLTQALGVSRGPLREAMSRLAGDGLVKIERNRGVTVRALTREEVRSISTIREVLEGLAARLAAAHIHEGSNREEFKRLWNEMQSVQVSSNAMEYVVANERFHTLIVRLS 275          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A380WBA1_AFIFE (Uncharacterized HTH-type transcriptional regulator ydfH n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A380WBA1_AFIFE)

HSP 1 Score: 98.2 bits (243), Expect = 2.580e-22
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 1
Query:    1 EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARA---YMGYNEAFHRAILDL 429
            E+       TVD I+  +++ +  GR+ PGQRL+ ++L + +  SR S+RE L++L+A+GL++I  ++GA VRRL R +V  L+ IR  LEGL ARLAA+H+     RKQ  A+    +   DGS RA   +M  N  +HR I+ +
Sbjct:    9 EEVSQRRGQTVDDIIGRVRNAILAGRIVPGQRLVANDLVEQLGVSRGSIREALQRLSAEGLVDITPNRGAMVRRLSREQVRDLFQIRINLEGLGARLAAEHIHEADHRKQFLAVW--NEVKPDGSERAWSLFMQQNRLYHRTIVSI 152          
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Match: A0A556AJ14_9BURK (GntR family transcriptional regulator n=2 Tax=Verticiella sediminum TaxID=1247510 RepID=A0A556AJ14_9BURK)

HSP 1 Score: 98.6 bits (244), Expect = 2.760e-22
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   31 VDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVREDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQHMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLS 432
            +DRI   I D    GR APGQRLIE++L + + ASR SVRE LR+L A+G++++  ++GA VR+L R +   L+ +RE LEGLAAR+AA+ + A    +   A  AA   ADD  A A+   N   H+ I+D S
Sbjct:   43 IDRIREAIVD----GRYAPGQRLIEADLMRELQASRGSVREALRRLGAEGIVDLVPNRGAVVRKLSRKDFCDLFRMREALEGLAARMAAERVAAHGLAEPFLAAAAATAEADDQGAAAFSRQNRTLHQLIVDFS 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13446.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GUV1_9HYPH5.890e-3549.65FCD domain-containing protein n=1 Tax=Hyphomicrobi... [more]
A0A0X3SB20_9ACTN7.040e-3145.71HTH gntR-type domain-containing protein n=1 Tax=St... [more]
UPI001B272EA01.590e-2641.73GntR family transcriptional regulator n=1 Tax=Stre... [more]
UPI002009FA9F7.700e-2643.80GntR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A437JAM5_9SPHN9.750e-2542.14GntR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A2C8ZXL6_9BURK5.290e-2337.06Transcriptional regulator, GntR family n=1 Tax=Bur... [more]
A0A853GPW2_9BURK6.290e-2340.13GntR family transcriptional regulator n=1 Tax=Alca... [more]
A0A2W4SYN0_9PROT1.340e-2245.99HTH gntR-type domain-containing protein n=1 Tax=Pr... [more]
A0A380WBA1_AFIFE2.580e-2240.41Uncharacterized HTH-type transcriptional regulator... [more]
A0A556AJ14_9BURK2.760e-2244.78GntR family transcriptional regulator n=2 Tax=Vert... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13446contigP-wetherbeei_contig13446:1119..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog883080.HMPREF9697_01675
PFAMsFCD,GntR
Model size474
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.22e-23
EggNOG OGsCOG1802@1|root,COG1802@2|Bacteria,1RI9N@1224|Proteobacteria,2UAIW@28211|Alphaproteobacteria
DescriptionFCD
Cds size474
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.8185277-CDS-P-wetherbeei_contig13446:1118..15921683185985.8185277-CDS-P-wetherbeei_contig13446:1118..1592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13446 1119..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13446.2.1prot_P-wetherbeei_contig13446.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13446 1119..1592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13446.2.1

>prot_P-wetherbeei_contig13446.2.1 ID=prot_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
EDAEPANASTVDRIMHHIKDDLKRGRLAPGQRLIESELQQAVVASRDSVR
EDLRKLAADGLIEIHLHKGARVRRLLRTEVESLYDIREVLEGLAARLAAQ
HMRAPAFRKQVAAIEAAYDRADDGSARAYMGYNEAFHRAILDLSARTSCS
ICCTTWR*
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mRNA from alignment at P-wetherbeei_contig13446:1119..1592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13446.2.1 ID=mRNA_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13446:1119..1592+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGACGCCGAACCGGCGAACGCTTCAACGGTCGATCGGATCATGCACCA CATCAAAGATGATCTGAAGCGCGGTCGGCTCGCGCCGGGCCAGCGCCTGA TCGAGAGCGAGCTGCAACAAGCGGTGGTTGCGAGCCGCGACTCGGTTCGC GAGGACTTGCGCAAGCTCGCGGCCGATGGGCTCATCGAAATCCATCTCCA TAAGGGAGCGCGTGTCCGCCGGCTTCTACGTACGGAGGTGGAGAGCCTCT ATGACATTCGTGAGGTGCTGGAGGGCCTCGCCGCACGTCTTGCGGCTCAG CACATGCGCGCGCCCGCCTTCCGCAAGCAAGTGGCGGCGATAGAGGCCGC GTACGACCGTGCCGACGACGGCTCGGCTCGTGCCTACATGGGCTACAACG AGGCGTTCCATCGCGCGATCCTCGACTTGAGCGCGAGGACGTCGTGTTCG ATCTGCTGCACGACCTGGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13446:1119..1592+

>mRNA_P-wetherbeei_contig13446.2.1 ID=mRNA_P-wetherbeei_contig13446.2.1|Name=mRNA_P-wetherbeei_contig13446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig13446:1119..1592+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGACGCCGAACCGGCGAACGCTTCAACGGTCGATCGGATCATGCACCA
CATCAAAGATGATCTGAAGCGCGGTCGGCTCGCGCCGGGCCAGCGCCTGA
TCGAGAGCGAGCTGCAACAAGCGGTGGTTGCGAGCCGCGACTCGGTTCGC
GAGGACTTGCGCAAGCTCGCGGCCGATGGGCTCATCGAAATCCATCTCCA
TAAGGGAGCGCGTGTCCGCCGGCTTCTACGTACGGAGGTGGAGAGCCTCT
ATGACATTCGTGAGGTGCTGGAGGGCCTCGCCGCACGTCTTGCGGCTCAG
CACATGCGCGCGCCCGCCTTCCGCAAGCAAGTGGCGGCGATAGAGGCCGC
GTACGACCGTGCCGACGACGGCTCGGCTCGTGCCTACATGGGCTACAACG
AGGCGTTCCATCGCGCGATCCTCGACTTGAGCGCGAGGACGTCGTGTTCG
ATCTGCTGCACGACCTGGCGCTGA
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