mRNA_P-wetherbeei_contig13443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13443.1.1
Unique NamemRNA_P-wetherbeei_contig13443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A7W9L869_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Nonomuraea jabiensis TaxID=882448 RepID=A0A7W9L869_9ACTN)

HSP 1 Score: 222 bits (566), Expect = 3.830e-69
Identity = 121/247 (48.99%), Postives = 158/247 (63.97%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGG 750
            MG+LEG+  IVTGAGQGIGRGIA A+A+EG  + +V+ N  AAAGT  E+  LGA AI +T D+ D       VA  +E FG VD LVN A A R G+P ++ +D D +LA  TG   +  FMRAC  P    GG ++N+ S +   GL G+  Y +AK  + GLT+ AA EWG  +I VNAI P A S  A++YFD+ P+   A L+   ++R GDAE DIGR  VFL GPD+ FITG ++M +GG
Sbjct:    1 MGSLEGKVAIVTGAGQGIGRGIATAMAKEGASIAVVDLNAEAAAGTAGEIERLGAAAIPLTCDIRDSAAVGAAVAAVVERFGTVDILVNNAMAARVGVPLEEITDEDLELAFRTGPMASTYFMRACF-PHLKGGGRVINLRSGSEIQGLVGYAAYVSAKAAVGGLTRTAAREWGAHDITVNAICPFALSEGAKSYFDSRPDELDAALSGLSLRRTGDAEADIGRAAVFLAGPDASFITGCSIMVDGG 246          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A2D6MLX5_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6MLX5_9DELT)

HSP 1 Score: 218 bits (555), Expect = 1.820e-67
Identity = 119/251 (47.41%), Postives = 157/251 (62.55%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTIM 762
            MG L+ +  +VTGAG+GIGRGIA  LAREG  + I E +P +      E+ + G RA+A   DV   +     V+  +EAFG VD LVN AQ  R  L F+D +D D ++ +++G+   F FM+AC   L  RGG ++N+ S+AG  G PG+T YA AKEGIR LTKVAA EWG  +I VNAI P A + +  A+ D HP+     LA  P+   GD E DIGR VVFL   DS F+TG+T+M +GG TI+
Sbjct:    1 MGRLDDKVALVTGAGRGIGRGIALELAREGAAIAIAEIDPGSGQSVVQEIESAGGRAMATVTDVRSREQAGAAVSAAVEAFGTVDVLVNNAQLQRQQLSFEDTTDDDMEVVLTSGIHATFYFMQACLPHLRRRGGKVINVASAAGLLGYPGWTSYAVAKEGIRALTKVAAREWGTYKINVNAICPAAETPSFGAWRDNHPDLAKDMLASIPLGHLGDPEVDIGRAVVFLASSDSDFVTGLTMMVDGGQTIL 251          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A524PAD5_9DELT (Glucose 1-dehydrogenase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524PAD5_9DELT)

HSP 1 Score: 216 bits (549), Expect = 1.510e-66
Identity = 117/248 (47.18%), Postives = 157/248 (63.31%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGG-SIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGG 750
            MG L+G+  IVTG G+GIG G+A ALAREG  + I+E +P  A  T  E+   GARA+A+  DVG     +  VA T+E FG +D LVN A      +   D++D D ++A    +   F  M+ACH  + VRGG SI+N  SSAGT G+ GF  YAAAKEG+R LT+VAA EWGP+ IRVN + P A S   + +  + PER AA +A  P++R GD EHDIG+ V FL   ++R++T  T+M +GG
Sbjct:    1 MGKLDGKVAIVTGGGRGIGLGVAAALAREGAAIAILEIDPLTARSTAIEIETSGARAVAIPCDVGSRDECETAVAHTVETFGGIDVLVNNATNAPREVSLADNTDEDMEIAWRVNVMATFWLMQACHPHMLVRGGGSIINFGSSAGTSGMIGFASYAAAKEGVRALTRVAAREWGPDGIRVNVVCPFAYSPGVKGWEASDPERFAAVVATVPLRRAGDCEHDIGQVVAFLASDEARYVTAQTMMVDGG 248          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A2D6MTV2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6MTV2_9DELT)

HSP 1 Score: 211 bits (537), Expect = 2.180e-64
Identity = 123/250 (49.20%), Postives = 146/250 (58.40%), Query Frame = 1
Query:    1 SAVMGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGG 750
            S V  +LEGR  IVTG G+GIGRGI  AL+  G  VVI E +  A       +   G R      DVGDP+  DR V +TLE  GR+D LVN A      +P  +H +  ++  I  GL G  RFMRACH  L  RGG I+N+VS+AG  G+ G   YAA KEGIR LTKVAA EWGP+ I VNAISP   S     Y +AHP      LAQRPI R GD E DIG   VFL G  + ++TG TL  +GG
Sbjct:   25 SPVTNSLEGRVAIVTGGGRGIGRGIVGALSAAGAVVVIAEIDDQAGEEAARSIGKRGGRVQHQPCDVGDPESIDRCVLQTLEDHGRIDILVNNAIFAVDQVPLLEHDEMMWEGLIRVGLRGTERFMRACHPSLCARGGRIINLVSAAGYQGMSGLGAYAAVKEGIRALTKVAAREWGPDGITVNAISPFGDSDGWRTYAEAHPSLARQALAQRPIARAGDCEIDIGSVAVFLAGDGAGYVTGATLPVDGG 274          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A1F8MZJ6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_13_54_8 TaxID=1797630 RepID=A0A1F8MZJ6_9CHLR)

HSP 1 Score: 210 bits (534), Expect = 2.470e-64
Identity = 121/251 (48.21%), Postives = 159/251 (63.35%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTIM 762
            MG L+G+  IVTGAGQG+GRGIA ALA+EG  V + E NP     T +E+ A G RA+++T DV   +     VA T++ FG V  LVN AQAMR+ + F+D +D D  LA+ +GL G F FM+ C       GG ++N+ S+AG +G  G+T YAAAKEGIR LTKVAA+EWG  +I VN I P A S N +    +  +     L   P++R GD+E DIG  VVFL   DS +ITG T+M +GG TI+
Sbjct:    1 MGKLDGKIAIVTGAGQGVGRGIALALAKEGAAVAVTEMNPDTCLKTTNEIKAAGNRALSITCDVRRRKQVQAAVAATVKEFGTVHILVNNAQAMRNQVLFEDTTDEDMALALESGLLGTFYFMQTCLPYFKEHGGKVINLASAAGLNGSAGWTAYAAAKEGIRALTKVAAHEWGQYKINVNVICPLAHSPNWDKVGQSALQ---LTLGTVPLRRLGDSEIDIGPAVVFLASSDSDYITGHTMMVDGGQTIL 248          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A2E5YFB3_9DELT (Oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YFB3_9DELT)

HSP 1 Score: 209 bits (533), Expect = 3.830e-64
Identity = 116/251 (46.22%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTIM 762
            M  L+G+  +VTGAG+GIGRGIA  LAREG  + I E +P     T  E+   G RA+ VT DV + +  +  V+   E +G VD L+N AQ  R  + F+D +D D D+ +++G+   F FM+AC   +   GG I+N+ S+AG  G PG+T YA AKEGIR LTKVAA EWG  +I VNAI P A + +   + D HP+   A     P+   GD E DIGR VVFL   DS F+TG TLM +GG TI+
Sbjct:    1 MSKLKGKIALVTGAGRGIGRGIALELAREGAAIAIAEIDPEGGQNTVREIETGGGRAMTVTTDVRNREQVNAAVSAAAEVYGTVDILINNAQIQRQQVSFEDTTDDDMDVVLTSGIHATFYFMQACFPLMRKCGGKIINVASAAGLLGHPGWTSYAVAKEGIRALTKVAAREWGTHKINVNAICPAAETPSFRLWRDNHPDLAKALTDSIPLGHLGDPEADIGRAVVFLASNDSDFVTGATLMVDGGQTIL 251          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A1S1RCS7_9ACTN (Short-chain dehydrogenase n=3 Tax=unclassified Frankia TaxID=2632575 RepID=A0A1S1RCS7_9ACTN)

HSP 1 Score: 208 bits (530), Expect = 1.020e-63
Identity = 128/247 (51.82%), Postives = 150/247 (60.73%), Query Frame = 1
Query:   10 MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGG 750
            MG L GR  +VTGAGQGIGRGIAHALAREG  V +  R          EL ALGA A+AV GDVG     DR VA+T+  FG +D LVN AQ+    +  +D +DAD +LA  +G  G    M+AC   L  RGGSIVN  SS G  G   F  YA AKE IRGL++VAA EWG   IRVN I P A S  AE Y +A+PER A  + + P+ R GD E DIGR V  LV  D  ++TG TLM  GG
Sbjct:    1 MGRLAGRVALVTGAGQGIGRGIAHALAREGAGVAVSGRRVDPLDTVVKELTALGASALAVPGDVGVRADADRMVAQTVAEFGALDILVNNAQSSVQ-VRLEDTTDADVELAWRSGALGTLYCMQACLPHLKERGGSIVNFGSSTGVRGDTTFGSYAMAKEAIRGLSRVAAREWGRYGIRVNVICPTAMSPAAEEYREANPERFAMVMREIPLGRFGDPETDIGRAVAALVSDDMSYLTGATLMLGGG 246          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: A0A0L8LNB9_9ACTN (Short-chain dehydrogenase n=7 Tax=Streptomyces TaxID=1883 RepID=A0A0L8LNB9_9ACTN)

HSP 1 Score: 208 bits (529), Expect = 1.640e-63
Identity = 125/248 (50.40%), Postives = 148/248 (59.68%), Query Frame = 1
Query:   19 LEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTIM 762
            L G T +VTG GQGIGRGIA ALA +G DVV+  R          E+   G    AV GDVG     DR V ET   FG +D LVN AQ++    P  + S  D +L+  +G  G F  MRA    L  RGGSIVN+ SSA   G  GF  YA AKE IRGLT+VAA EWGP  IRVNAI P + S  A AYF+AHPE+ A  L++ P+ R GDAE DIGR VV L     R++TG TL+  GG TI+
Sbjct:    7 LAGTTALVTGGGQGIGRGIALALAADGADVVVTGRTEKTLRAVVAEIEERGTAGHAVVGDVGQRDDVDRMVEETARTFGGLDILVNNAQSVVQR-PLAETSYEDLELSYRSGPLGTFHAMRAALPYLKRRGGSIVNLASSAALIGQEGFASYAMAKEAIRGLTRVAAREWGPYGIRVNAICPVSLSPGAAAYFEAHPEKHAEVLSEIPLGRLGDAEQDIGRAVVALADDGMRYLTGATLVLEGGRTIV 253          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: UPI001CA81672 (SDR family oxidoreductase n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA81672)

HSP 1 Score: 206 bits (523), Expect = 1.540e-62
Identity = 119/246 (48.37%), Postives = 150/246 (60.98%), Query Frame = 1
Query:   19 LEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIA-VTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRG-GSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGG 750
            LEGR  IVTGA QGIGRGIA AL   G  V++V+ N    A T +   AL  R +A +  D+ +P   +R VA  +EAFGR+D LVN A A R+  PF +HSD D+DL   TG    FR M+A    L   G GS+VN+ SSAGT G  G+  YAAAKE +RGL+KVAA EWG   +RVN + P A S  A+ +    PE   A LA+ P+KR GD   D+G  V FL   D+ +ITG T+M +GG
Sbjct:   11 LEGRAAIVTGAAQGIGRGIAQALTERGAAVLLVDHNAETLARTTE---ALAGRTVAPLVCDIREPGQAERIVAAAVEAFGRLDVLVNNAIATRAAGPFTEHSDEDYDLVFDTGPRATFRLMKAAFPHLVASGSGSVVNLGSSAGTEGQAGWATYAAAKEAVRGLSKVAATEWGAANVRVNVVCPFANSEGAQLWEQYDPESFGAALAKVPLKRIGDTRTDVGALVAFLASDDATYITGQTIMIDGG 253          
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Match: UPI001EF5A075 (SDR family oxidoreductase n=4 Tax=Frankia TaxID=1854 RepID=UPI001EF5A075)

HSP 1 Score: 205 bits (521), Expect = 3.180e-62
Identity = 117/252 (46.43%), Postives = 145/252 (57.54%), Query Frame = 1
Query:    7 VMGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDELLALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPFQDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLPGFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHPERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTIM 762
            + G L G+  IVTGAGQG+GRGIAHALA+EG  V +  R       T  E++  G RA+A   DV D    +  VA  +E +G VD LVN AQ +    P  + +  D  +  S+G  G F  MRAC   L+  GG I+N+ SS G  G PGF  Y  AKE IRGLTKVAA EWG   I VN I P   S  A A+ DA P+R  A L + P+ R GD EHDIG  VV L GP   ++TG TLM +GG  ++
Sbjct:    8 LAGLLVGKVAIVTGAGQGVGRGIAHALAKEGAAVAVGGRTLTKVERTAAEIIEAGGRALAAGCDVADQGQVEALVAAAVEVYGTVDILVNNAQTVVPPKPLGETTPEDLAVCYSSGTLGTFHAMRACFPHLSAHGGRIINLASSTGVEGDPGFASYVMAKEAIRGLTKVAAREWGQYGITVNVICPFGDSPAATAFRDAAPKRFEAVLRKVPLGRMGDCEHDIGGAVVALAGPGMSYVTGATLMVDGGRCVL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W9L869_9ACTN3.830e-6948.99NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
A0A2D6MLX5_9DELT1.820e-6747.41Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A524PAD5_9DELT1.510e-6647.18Glucose 1-dehydrogenase n=1 Tax=Myxococcales bacte... [more]
A0A2D6MTV2_9DELT2.180e-6449.20Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1F8MZJ6_9CHLR2.470e-6448.21Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2E5YFB3_9DELT3.830e-6446.22Oxidoreductase n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A1S1RCS7_9ACTN1.020e-6351.82Short-chain dehydrogenase n=3 Tax=unclassified Fra... [more]
A0A0L8LNB9_9ACTN1.640e-6350.40Short-chain dehydrogenase n=7 Tax=Streptomyces Tax... [more]
UPI001CA816721.540e-6248.37SDR family oxidoreductase n=1 Tax=Dactylosporangiu... [more]
UPI001EF5A0753.180e-6246.43SDR family oxidoreductase n=4 Tax=Frankia TaxID=18... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13443contigP-wetherbeei_contig13443:391..1158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog298655.KI912266_gene2800
PFAMsadh_short_C2
Model size768
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.04e-62
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2GVVR@201174|Actinobacteria
DescriptionShort-chain dehydrogenase reductase sdr
Cds size759
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.7396283-CDS-P-wetherbeei_contig13443:390..11491683185985.7396283-CDS-P-wetherbeei_contig13443:390..1149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13443 391..1149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.753019-UTR-P-wetherbeei_contig13443:1149..11581683185985.753019-UTR-P-wetherbeei_contig13443:1149..1158Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13443 1150..1158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13443.1.1prot_P-wetherbeei_contig13443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13443 391..1149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13443.1.1

>prot_P-wetherbeei_contig13443.1.1 ID=prot_P-wetherbeei_contig13443.1.1|Name=mRNA_P-wetherbeei_contig13443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
MGTLEGRTGIVTGAGQGIGRGIAHALAREGMDVVIVERNPAAAAGTRDEL
LALGARAIAVTGDVGDPQLPDRTVAETLEAFGRVDALVNGAQAMRSGLPF
QDHSDADFDLAISTGLWGAFRFMRACHAPLAVRGGSIVNIVSSAGTHGLP
GFTGYAAAKEGIRGLTKVAANEWGPEEIRVNAISPQATSANAEAYFDAHP
ERRAAKLAQRPIKRDGDAEHDIGRTVVFLVGPDSRFITGVTLMCNGGLTI
MP*
back to top

mRNA from alignment at P-wetherbeei_contig13443:391..1158-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13443.1.1 ID=mRNA_P-wetherbeei_contig13443.1.1|Name=mRNA_P-wetherbeei_contig13443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig13443:391..1158- (Phaeothamnion wetherbeei SAG_119_79)
AGTGCTGTCATGGGAACGCTGGAGGGACGCACCGGCATCGTCACCGGGGC CGGCCAGGGGATCGGCCGTGGCATCGCCCACGCGCTGGCTCGCGAGGGCA TGGACGTGGTGATCGTGGAGCGCAACCCCGCAGCGGCCGCGGGCACTCGC GACGAGCTGCTCGCGCTCGGTGCCCGAGCGATCGCCGTGACGGGCGACGT CGGCGATCCGCAGTTGCCCGACCGCACGGTTGCCGAGACGTTGGAAGCGT TCGGCCGGGTGGACGCGCTGGTCAACGGCGCGCAGGCGATGCGCTCCGGT CTCCCGTTCCAGGATCACAGCGATGCCGATTTCGATCTGGCCATCTCGAC GGGCCTGTGGGGTGCGTTCCGGTTCATGCGCGCCTGCCATGCCCCGCTCG CGGTGCGGGGCGGCTCGATCGTCAACATCGTCTCCTCGGCGGGCACGCAC GGGCTGCCCGGCTTCACCGGGTACGCAGCGGCGAAGGAGGGCATCCGCGG GTTGACGAAGGTGGCCGCCAACGAATGGGGACCGGAGGAGATCCGCGTCA ACGCCATCTCCCCACAGGCCACGTCGGCCAACGCCGAGGCCTACTTCGAC GCCCACCCCGAGCGGCGGGCGGCGAAGCTGGCCCAGCGACCGATCAAGCG CGACGGCGATGCCGAGCACGACATCGGCCGAACCGTGGTCTTTCTCGTCG GCCCCGACTCGCGCTTCATCACCGGTGTCACGCTGATGTGCAACGGCGGC CTGACGATCATGCCCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13443:391..1158-

>mRNA_P-wetherbeei_contig13443.1.1 ID=mRNA_P-wetherbeei_contig13443.1.1|Name=mRNA_P-wetherbeei_contig13443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig13443:391..1158- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAACGCTGGAGGGACGCACCGGCATCGTCACCGGGGCCGGCCAGGG
GATCGGCCGTGGCATCGCCCACGCGCTGGCTCGCGAGGGCATGGACGTGG
TGATCGTGGAGCGCAACCCCGCAGCGGCCGCGGGCACTCGCGACGAGCTG
CTCGCGCTCGGTGCCCGAGCGATCGCCGTGACGGGCGACGTCGGCGATCC
GCAGTTGCCCGACCGCACGGTTGCCGAGACGTTGGAAGCGTTCGGCCGGG
TGGACGCGCTGGTCAACGGCGCGCAGGCGATGCGCTCCGGTCTCCCGTTC
CAGGATCACAGCGATGCCGATTTCGATCTGGCCATCTCGACGGGCCTGTG
GGGTGCGTTCCGGTTCATGCGCGCCTGCCATGCCCCGCTCGCGGTGCGGG
GCGGCTCGATCGTCAACATCGTCTCCTCGGCGGGCACGCACGGGCTGCCC
GGCTTCACCGGGTACGCAGCGGCGAAGGAGGGCATCCGCGGGTTGACGAA
GGTGGCCGCCAACGAATGGGGACCGGAGGAGATCCGCGTCAACGCCATCT
CCCCACAGGCCACGTCGGCCAACGCCGAGGCCTACTTCGACGCCCACCCC
GAGCGGCGGGCGGCGAAGCTGGCCCAGCGACCGATCAAGCGCGACGGCGA
TGCCGAGCACGACATCGGCCGAACCGTGGTCTTTCTCGTCGGCCCCGACT
CGCGCTTCATCACCGGTGTCACGCTGATGTGCAACGGCGGCCTGACGATC
ATGCCCTGA
back to top