prot_P-wetherbeei_contig13439.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig13439.1.1
Unique Nameprot_P-wetherbeei_contig13439.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length268
Homology
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.530e-55
Identity = 118/256 (46.09%), Postives = 153/256 (59.77%), Query Frame = 0
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALA--EGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAAA 254
            V+P VRN LA  +CR+LKLTT  L+RL+  G      TE+ LPDCSRIEP QM  ++L+CR +L VLRLGTCG C  D T  AL KAGG+PRLE  SL G Y+L+D  +  LL   P L  +EL  +SR+    L  +   E P+G  LT LS+  C QL   +L+ L     LE L  +G+  LTD +L   L  CG  LR LDI DC  LTDA+L A+   CG L  L+LG+ P  ++ A+  +F +  + A A
Sbjct:  326 VSPEVRNHLAAVMCRQLKLTTEALQRLSEPG-----VTEIILPDCSRIEPDQMRNSILQCRRTLRVLRLGTCGRCVGDATLEALTKAGGVPRLEMASLAGTYQLTDAGVLELLSCCPRLTGLELSANSRITLKALEKMVDKERPIGMALTTLSLTDCIQLGPDELEPLKGMACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEA 576          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A836CJL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.150e-37
Identity = 110/293 (37.54%), Postives = 140/293 (47.78%), Query Frame = 0
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQME----------------------------------------ATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAA 253
            VTP VRNRL   LCR+L+LT   L RLA  G       E+ LPDCSRI+ QQM+                                         TLL CRE+L  L L  CG CFT  T AAL  AGG+P +  L+L G Y L DT+L +LL   P LR + L   +RLG  G AA+A+   G  L  LS+  C+ +DAA L  +    AL  L  +G+ A+TD  L   L+ CG+ L  L +  C+  TD ++ A+         L L   P  +  AL  LF   DA AA
Sbjct:  391 VTPEVRNRLGALLCRQLQLTPEVLSRLAAPG-----VAEVVLPDCSRIDAQQMQXXXXXXXXXXXXXXQPLPRSAAVVPRHAVRFDHTMASLGVTTLLRCRETLAALELRMCGRCFTGATVAALASAGGLPSVTRLALTGTYLLPDTALDALLAAAPRLRHLTLAQSARLGARGAAAIAD-RCGATLQSLSLASCEGVDAAALAHIARCGALTALDLSGVAAVTDEALARVLSACGEKLEALRVAHCDXXTDGAVQAI---------LSLADVPLVTGAALAVLFG--DAAAA 666          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A7S0NT00_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NT00_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 8.550e-27
Identity = 93/235 (39.57%), Postives = 123/235 (52.34%), Query Frame = 0
Query:    1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATL---LECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPA-LRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLG 231
            +TP +++ +A  LC+  KLT+ +L   A      A  TEL +PDC  IEP  + A L   ++    L V+ LG CG C T H A+ L  A     L +L L GCYRLSD +L SLLR     L  + L  +S+L    + A+ E  L  +L  L++    QL +A L  L     LE L   G+  LTD VL   L  C  +L  L +EDC  LTDA + AVR  CGSL +L LG
Sbjct:   51 LTPAIQHDIATALCKVRKLTSSSLALFAPAD---APLTELIIPDCHAIEPDDLAAALAPHVDHHSRLAVVHLGFCGRCVTPHVASLLEHAAA---LHSLHLDGCYRLSDDALVSLLRARGGGLNTLFLSANSQLTATAVQAIGEHCL--QLRRLALENLAQLPSAALLPLRGLLHLERLSLRGVCMLTDEVLVELLGGCSGTLTHLCVEDCCLLTDAGVAAVRS-CGSLRDLDLG 276          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A0M0LR49_9EUKA (F-box lrr-repeat protein 20-like isoform 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LR49_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 2.070e-12
Identity = 69/202 (34.16%), Postives = 92/202 (45.54%), Query Frame = 0
Query:   32 SEGALATELALPDCSRIEPQQMEATLLECRES----LEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPA-LRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTEL 228
            +E A ATEL LP+CS +    M+  L    +     L ++ LG CG        A L +   +  L TL L GCYRLS  +L SLL    A L  + L  +S+ G A    L     G  L  L +  CDQL +  L  L    AL  L  +GL  LTD  L   +  C   L  L +  C  L+  ++ +V R C +L EL
Sbjct:  128 AEDAGATELVLPNCSLLTEGAMKQALSRLADHATHPLRLVDLGLCGRPMGPEAVAVLER---LSELHTLRLRGCYRLSTPALRSLLGARGAGLTELVLSSNSQFG-ADSIGLIGAHCGDTLRTLRLEDCDQLPSECLAPLRRLRALTTLSLSGLCLLTDERLLELIDGCAPRLTSLGLRGCSLLSPEAIVSVARLCATLREL 325          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A4S8IK87_MUSBA (F-box domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8IK87_MUSBA)

HSP 1 Score: 55.5 bits (132), Expect = 4.300e-5
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 0
Query:   89 GMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLD-----AADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGL 244
            G+ +L+++S++ C  L+D +L ++ +  P L+ + +     L  AGL A A       L  L +  C+Q+       A L+      +L ++R  GL    D   E +      SLR L I+DC G+T AS+  V R C  L  + L      ++E+L+ L
Sbjct:  356 GLQKLKSISINCCNGLTDAALQAIAKGSPFLKQLFVCKSCYLSDAGLIAFAG--TAKALESLHLEDCNQITLMGILGALLKRSAELKSLSLVRCLGLK---DISFEFSQLPSCMSLRSLTIQDCPGVTSASIQVVGRICPQLQNIDLSGQVGVTDESLIPL 511          
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: S8BZR3_9LAMI (F-box family protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8BZR3_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 9.700e-5
Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 0
Query:   93 LETLSLHGCYRLSDTSLASLLRTLPALRAVELP-CDSRLGRAGLAALAEGPLGGRLTGLSVNQC----DQLDAADLQFLGSFPALEILRAAGLPALTDA-----------VLEAALARC-----------------GKSLRLLDIEDCEGLTDASLTAVRR 220
            L  L L  C  L D +L S+  +LP LR + L  CD  +  AG++ L+ GP G  L  LS+  C    D+       F GS  +L  L  + LP ++D+           V E  + +C                 G SLRLLD+ +C G+T+ASL  +RR
Sbjct:  389 LSVLDLRECRSLGDEALRSV-SSLPGLRTLLLDGCD--VSDAGISYLSTGPAGRNLVSLSLRGCRRLTDRCIGGGPMFDGSVSSLRELDLSNLPNVSDSAVLALARGRVPVTELRVRQCXXXXXXXXXXXXSMRCRGGSLRLLDVYNCGGMTEASLRWLRR 546          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHT5_ECTSI1.530e-5546.09Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836CJL7_9STRA5.150e-3737.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0NT00_9EUKA8.550e-2739.57Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0M0LR49_9EUKA2.070e-1234.16F-box lrr-repeat protein 20-like isoform 2 n=1 Tax... [more]
A0A4S8IK87_MUSBA4.300e-528.57F-box domain-containing protein n=2 Tax=Musa TaxID... [more]
S8BZR3_9LAMI9.700e-532.30F-box family protein (Fragment) n=1 Tax=Genlisea a... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 116..141
e-value: 89.0
score: 7.1
coord: 90..115
e-value: 0.0085
score: 25.3
coord: 222..247
e-value: 50.0
score: 9.1
coord: 196..221
e-value: 1.8
score: 17.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 35..160
e-value: 4.6E-13
score: 50.8
coord: 161..250
e-value: 6.8E-14
score: 53.5
NoneNo IPR availablePANTHERPTHR13382:SF7F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17coord: 17..127
coord: 128..242
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 17..127
coord: 128..242
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 42..245

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13439contigP-wetherbeei_contig13439:178..1469 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13439.1.1mRNA_P-wetherbeei_contig13439.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig13439 178..1469 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig13439.1.1 ID=prot_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEP
QQMEATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHG
CYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGL
SVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLR
LLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDA
MAAAAKAAQAEAAAAAAA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf