mRNA_P-wetherbeei_contig13439.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: D8LHT5_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHT5_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.530e-55 Identity = 118/256 (46.09%), Postives = 153/256 (59.77%), Query Frame = 1
Query: 1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALA--EGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAAA 762
V+P VRN LA +CR+LKLTT L+RL+ G TE+ LPDCSRIEP QM ++L+CR +L VLRLGTCG C D T AL KAGG+PRLE SL G Y+L+D + LL P L +EL +SR+ L + E P+G LT LS+ C QL +L+ L LE L +G+ LTD +L L CG LR LDI DC LTDA+L A+ CG L L+LG+ P ++ A+ +F + + A A
Sbjct: 326 VSPEVRNHLAAVMCRQLKLTTEALQRLSEPG-----VTEIILPDCSRIEPDQMRNSILQCRRTLRVLRLGTCGRCVGDATLEALTKAGGVPRLEMASLAGTYQLTDAGVLELLSCCPRLTGLELSANSRITLKALEKMVDKERPIGMALTTLSLTDCIQLGPDELEPLKGMACLERLSLSGVIKLTDGILLQILEACGGRLRHLDISDCTDLTDATLKAIGERCGVLESLNLGLCPLLTSGAIQEIFQYSGSSAEA 576
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A836CJL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL7_9STRA) HSP 1 Score: 149 bits (375), Expect = 5.150e-37 Identity = 110/293 (37.54%), Postives = 140/293 (47.78%), Query Frame = 1
Query: 1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQME----------------------------------------ATLLECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGLFAFKDAMAA 759
VTP VRNRL LCR+L+LT L RLA G E+ LPDCSRI+ QQM+ TLL CRE+L L L CG CFT T AAL AGG+P + L+L G Y L DT+L +LL P LR + L +RLG G AA+A+ G L LS+ C+ +DAA L + AL L +G+ A+TD L L+ CG+ L L + C+ TD ++ A+ L L P + AL LF DA AA
Sbjct: 391 VTPEVRNRLGALLCRQLQLTPEVLSRLAAPG-----VAEVVLPDCSRIDAQQMQXXXXXXXXXXXXXXQPLPRSAAVVPRHAVRFDHTMASLGVTTLLRCRETLAALELRMCGRCFTGATVAALASAGGLPSVTRLALTGTYLLPDTALDALLAAAPRLRHLTLAQSARLGARGAAAIAD-RCGATLQSLSLASCEGVDAAALAHIARCGALTALDLSGVAAVTDEALARVLSACGEKLEALRVAHCDXXTDGAVQAI---------LSLADVPLVTGAALAVLFG--DAAAA 666
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A7S0NT00_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NT00_9EUKA) HSP 1 Score: 117 bits (292), Expect = 8.550e-27 Identity = 93/235 (39.57%), Postives = 123/235 (52.34%), Query Frame = 1
Query: 1 VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPQQMEATL---LECRESLEVLRLGTCGCCFTDHTAAALVKAGGMPRLETLSLHGCYRLSDTSLASLLRTLPA-LRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLDAADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLG 693
+TP +++ +A LC+ KLT+ +L A A TEL +PDC IEP + A L ++ L V+ LG CG C T H A+ L A L +L L GCYRLSD +L SLLR L + L +S+L + A+ E L +L L++ QL +A L L LE L G+ LTD VL L C +L L +EDC LTDA + AVR CGSL +L LG
Sbjct: 51 LTPAIQHDIATALCKVRKLTSSSLALFAPAD---APLTELIIPDCHAIEPDDLAAALAPHVDHHSRLAVVHLGFCGRCVTPHVASLLEHAAA---LHSLHLDGCYRLSDDALVSLLRARGGGLNTLFLSANSQLTATAVQAIGEHCL--QLRRLALENLAQLPSAALLPLRGLLHLERLSLRGVCMLTDEVLVELLGGCSGTLTHLCVEDCCLLTDAGVAAVRS-CGSLRDLDLG 276
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: A0A4S8IK87_MUSBA (F-box domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8IK87_MUSBA) HSP 1 Score: 55.5 bits (132), Expect = 4.300e-5 Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1
Query: 265 GMPRLETLSLHGCYRLSDTSLASLLRTLPALRAVELPCDSRLGRAGLAALAEGPLGGRLTGLSVNQCDQLD-----AADLQFLGSFPALEILRAAGLPALTDAVLEAALARCGKSLRLLDIEDCEGLTDASLTAVRRHCGSLTELHLGMNPSFSNEALLGL 732
G+ +L+++S++ C L+D +L ++ + P L+ + + L AGL A A L L + C+Q+ A L+ +L ++R GL D E + SLR L I+DC G+T AS+ V R C L + L ++E+L+ L
Sbjct: 356 GLQKLKSISINCCNGLTDAALQAIAKGSPFLKQLFVCKSCYLSDAGLIAFAG--TAKALESLHLEDCNQITLMGILGALLKRSAELKSLSLVRCLGLK---DISFEFSQLPSCMSLRSLTIQDCPGVTSASIQVVGRICPQLQNIDLSGQVGVTDESLIPL 511
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Match: S8BZR3_9LAMI (F-box family protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8BZR3_9LAMI) HSP 1 Score: 54.3 bits (129), Expect = 9.700e-5 Identity = 52/161 (32.30%), Postives = 74/161 (45.96%), Query Frame = 1
Query: 277 LETLSLHGCYRLSDTSLASLLRTLPALRAVELP-CDSRLGRAGLAALAEGPLGGRLTGLSVNQC----DQLDAADLQFLGSFPALEILRAAGLPALTDA-----------VLEAALARC-----------------GKSLRLLDIEDCEGLTDASLTAVRR 660
L L L C L D +L S+ +LP LR + L CD + AG++ L+ GP G L LS+ C D+ F GS +L L + LP ++D+ V E + +C G SLRLLD+ +C G+T+ASL +RR
Sbjct: 389 LSVLDLRECRSLGDEALRSV-SSLPGLRTLLLDGCD--VSDAGISYLSTGPAGRNLVSLSLRGCRRLTDRCIGGGPMFDGSVSSLRELDLSNLPNVSDSAVLALARGRVPVTELRVRQCXXXXXXXXXXXXSMRCRGGSLRLLDVYNCGGMTEASLRWLRR 546 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13439.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13439.1.1 >prot_P-wetherbeei_contig13439.1.1 ID=prot_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp VTPNVRNRLAGHLCRRLKLTTGTLRRLATGGSEGALATELALPDCSRIEPback to top mRNA from alignment at P-wetherbeei_contig13439:178..1469+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13439.1.1 ID=mRNA_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1292bp|location=Sequence derived from alignment at P-wetherbeei_contig13439:178..1469+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13439:178..1469+ >mRNA_P-wetherbeei_contig13439.1.1 ID=mRNA_P-wetherbeei_contig13439.1.1|Name=mRNA_P-wetherbeei_contig13439.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig13439:178..1469+ (Phaeothamnion wetherbeei SAG_119_79)back to top |