mRNA_P-wetherbeei_contig13436.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13436.2.1
Unique NamemRNA_P-wetherbeei_contig13436.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A835YY45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY45_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.820e-24
Identity = 65/158 (41.14%), Postives = 90/158 (56.96%), Query Frame = 1 
Query:   10 AIFARVNELQRVT-DPVSRPYESKYKARELLQDAVRRLKPQPV-DAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLAS 477
            A+ A V++L+    DPV+ PY SKYKA+++L + V  L      D  R   RLG+IA + EE H A+  L+AA    +PGL +A+   AGDEH+   AA +Q        +P  A        AL+ P E M+ L  LG++W+QR CPRRAL YLL +
Sbjct:   27 AVLAEVDQLRSTDKDPVTAPYTSKYKAKDVLTEHVASLPALAASDRVRLLHRLGIIAFETEENHVADAKLSAAVEPCYPGLAQAIADAAGDEHET--AANEQ------PPVPTTAPPIAATPLALSLPAETMECLTKLGVIWAQRACPRRALLYLLTA 176
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A482RZX5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZX5_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 6.350e-16
Identity = 55/181 (30.39%), Postives = 88/181 (48.62%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQP----------------VDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMYEA 495
            D   +    ++L  + DP ++P++SKYKAR++L++  ++L+                   V  A    +LG++  D EE H A+T L  A   +FPGLI+ ++   G+E DP      +  S   E +      +V       +  E M  LN LGI+WS R    +A+ YLL + Q+YEA
Sbjct:   32 DYDRVLVEADKLAEILDPENKPFDSKYKARDILEEMAKKLEANKAIAMLDNNTVLVAKLRVKLANLRTKLGLLCWDCEEPHNAQTDLEEACNFYFPGLIQKIEKLGGEEADPNHVRDAKTGSVDYEGMLLSTPPYVQDFNK-QYLAEGMRCLNILGIVWSGRGQCGKAVLYLLTAQQLYEA 211
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A3R7GIQ0_9STRA (KIF-binding protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GIQ0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-12
Identity = 54/147 (36.73%), Postives = 76/147 (51.70%), Query Frame = 1 
Query:   52 PVSRPYESKYKARELLQDAVRRLKPQPVDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMYE 492
            P + PY + Y+  E+LQ  +R  K  P + A A  RLG   + VEE H A+ +L  +   FFP L+      + D+  P  AAA++AA E++   P+      P   A      A++LLN LG+LWS R  P RAL YL A   + E
Sbjct:   14 PETTPYAAHYRVIEILQK-LRTTKLSPAENACAAARLGATYLLVEEPHHAQPALEESGNFFFPELVTYTTTISADDGAPAQAAAKEAAPELLAERPQ--VQISPEHEAYLM--YAVELLNQLGVLWSNRSRPLRALCYLSAGLDLSE 155
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A6A4CAA9_9STRA (KIF-binding protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CAA9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.580e-12
Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPREATGFVPAAAALA-FPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMYE 492
            D  A+  R++++     P + PY ++Y+  E+L   +R     P + A +  +LG   + VEE H A+ +L  A A FFP L++       D+      A ++ AS++++ +P+     +     L  F     +LLN LG+LWS R  P RAL YL A+  + E
Sbjct:    7 DFHALLRRLDDIAEEECPETTPYAARYRVLEILHK-LRTTALPPAEMAISAAKLGATYLAVEEPHHAQAALEEAGAFFFPRLVQFTAGIETDDGSSAQEAVKETASKLLDEMPQ-----LDVETQLEEFAAHVAELLNQLGVLWSNRSRPLRALCYLWAARTLCE 165
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A3F2RGP4_9STRA (KIF-binding protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGP4_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.490e-12
Identity = 53/164 (32.32%), Postives = 81/164 (49.39%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMYE 492
            D  A+  R+ ++     P + PY + Y+  E+LQ  +R     P +   A  RLG   + VEE H A+ +L  +   FFP L+      + D+  P  AAA++AA E++   P+      P     A+    ++LLN LG+LWS R  P R+L YL A   + E
Sbjct:    7 DFHALMRRLEDISSEEVPETTPYAAHYRVIEILQK-LRTTNLSPAENVCAAARLGTTYLLVEEPHHAQPALEESGNFFFPELVTYTTTISADDGAPAQAAAKEAAPELLAERPQ--VQISPEHE--AYLVYVVELLNQLGVLWSNRSRPLRSLCYLSAGLDLSE 165
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: D7FI61_ECTSI (KIF-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI61_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-11
Identity = 62/188 (32.98%), Postives = 84/188 (44.68%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQ-------------------PVDAARA---DFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEA-----LPREATGFVPAAAALAF--PGEAMDLLNHLGILWSQRECPRRALFYLLAS 477
            ++K +     +L  V DP + P+ SKYKARE LQ A + L  Q                      A R    D+RLGVIA+ VEE   A+ +L+  A  FF G++  + A A            +             +P E    + +   LA+  P EA D L  LG+LWS R  PRR+L YLLAS
Sbjct:   29 EVKTLMEISRKLCLVEDPPAEPFRSKYKAREALQKARQNLVGQLGQQHGGXXXXXXXXXXXXXXXAGRVAVIDYRLGVIALAVEENSAAQEALDKCADAFFEGVVSKIAAAAXXXXXXXXXXLAKXXXXXXXXXXXXXIPTEPPAGMVSPCPLAWECPEEAADTLTQLGLLWSARGYPRRSLLYLLAS 216
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A7S3GRP4_9STRA (KIF-binding protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRP4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.980e-10
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 1 
Query:   43 VTDPVSRPYESKYKARELLQDAVRRL-----------KPQPVDA-----ARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQA--ASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMY 489
            V DPV+ P+ESKYKAR LL   + +L           K   ++      A A  ++G I+ + EE H A+T L  A   +FPGL++ +   +G+  +  A   ++   +++I E  P      +          +AM  LN LGILW+ R   ++++ +LL + Q Y
Sbjct:   47 VNDPVTAPFESKYKARTLLDQIINKLDATRAISTLEKKTATIEQLDRRLASAKVKVGTISWECEEPHNAQTDLELACQYYFPGLVDKITEVSGESDEEHADGKEKTVTSADIKEPPPVSVLAEILVV-------DAMRALNILGILWAGRGQVQKSMLFLLCARQFY 206
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A329RNA2_9STRA (KIF-binding protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNA2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.910e-8
Identity = 50/172 (29.07%), Postives = 80/172 (46.51%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALPR--------EATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQMYE 492
            D  A+  R++ +     P + PY S+Y+  E+LQ       P   +A  A  +LG   + VEE H A+ +L  A   FFP L++       D+     + A++  S++++ +P         E   +V            ++LLN LG+LWS R    RAL YL AS ++ E
Sbjct:    7 DFHALLRRLDAIALEECPETTPYASQYRVVEILQKLRTTHLPLAQNAIAA-AKLGATFLAVEEPHNAQPALEEAGNFFFPELVQFTTEITSDDGSSGRSGAEKEVSKVLKEIPEVEVKNEHEELVAYV------------VELLNQLGVLWSNRSRLLRALCYLSASQKLCE 165
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: W2R0J4_PHYPN (KIF-binding protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2R0J4_PHYPN)

HSP 1 Score: 61.6 bits (148), Expect = 4.800e-8
Identity = 51/167 (30.54%), Postives = 78/167 (46.71%), Query Frame = 1 
Query:    1 DMKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAARADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIVEALP-----REATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRRALFYLLASTQM 486
            D  A+  R++ +     P + PY S+Y+  E+LQ  +R     P + A A  +LG   + VEE H A+ +L  A   FFP L+        D+     + A++ A  +++ +P      E   FV            ++LLN LG+LWS R    RAL YL AS  +
Sbjct:    7 DFHALLQRLDAIALEECPETTPYASQYRVIEILQK-LRTTSLPPAENAVATAKLGTTFLAVEEPHNAQPALEEAGNFFFPELVTFTTEITSDDGQ---SGAEKDAPRVLKEMPAVQVKNEHDEFVV---------YVVELLNQLGVLWSNRSRLLRALCYLTASQSL 160
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BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Match: A0A7R9YAX4_9STRA (KIF-binding protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.140e-7
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 1 
Query:   16 FARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAAR----ADFRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAAQQAASEIV---EALPREATGFVPAAAALAFPGE---AMDLLNHLGILWSQRECPRRALFYLLASTQM 486
             A    L  V DP   P++SKY+A  LLQ A   L+    +  R       R+G + +  E+   A+ +L +      P L++ V   +GD+    A  AQ+   EIV   + L R             F  E     D LN LG+LWSQR+ PRR+L YLL + ++
Sbjct:   36 LAEAERLSLVQDPDGEPFKSKYQALRLLQRAKELLQGAEEEHGRDLRDLQRRIGALHLATEDFAAADEALTSCITMLAPELVQRVGKLSGDDE---AEDAQELPPEIVLGDQELQR-------------FRDELETVWDCLNLLGLLWSQRDRPRRSLLYLLVAERL 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13436.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835YY45_9STRA2.820e-2441.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482RZX5_9ARCH6.350e-1630.39Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A3R7GIQ0_9STRA1.300e-1236.73KIF-binding protein n=2 Tax=Phytophthora kernoviae... [more]
A0A6A4CAA9_9STRA2.580e-1230.30KIF-binding protein n=2 Tax=Phytophthora TaxID=478... [more]
A0A3F2RGP4_9STRA6.490e-1232.32KIF-binding protein n=1 Tax=Phytophthora kernoviae... [more]
D7FI61_ECTSI1.710e-1132.98KIF-binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3GRP4_9STRA1.980e-1029.94KIF-binding protein n=1 Tax=Spumella elongata TaxI... [more]
A0A329RNA2_9STRA1.910e-829.07KIF-binding protein n=2 Tax=Phytophthora TaxID=478... [more]
W2R0J4_PHYPN4.800e-830.54KIF-binding protein n=16 Tax=Phytophthora TaxID=47... [more]
A0A7R9YAX4_9STRA6.140e-731.74KIF-binding protein (Fragment) n=1 Tax=Pinguiococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13436contigP-wetherbeei_contig13436:867..1665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.367
PFAMsKBP_C
Model size495
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.57e-14
EggNOG OGs2CG8G@1|root,2QPZT@2759|Eukaryota,3QBN9@4776|Peronosporales
DescriptionKIF-1 binding protein C terminal
Cds size492
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.306032-UTR-P-wetherbeei_contig13436:866..8691683185985.306032-UTR-P-wetherbeei_contig13436:866..869Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13436 867..869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.3144846-CDS-P-wetherbeei_contig13436:869..10041683185985.3144846-CDS-P-wetherbeei_contig13436:869..1004Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13436 870..1004 +
1683185985.3223646-CDS-P-wetherbeei_contig13436:1308..16651683185985.3223646-CDS-P-wetherbeei_contig13436:1308..1665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13436 1309..1665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13436.2.1prot_P-wetherbeei_contig13436.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13436 870..1665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13436.2.1

>prot_P-wetherbeei_contig13436.2.1 ID=prot_P-wetherbeei_contig13436.2.1|Name=mRNA_P-wetherbeei_contig13436.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MKAIFARVNELQRVTDPVSRPYESKYKARELLQDAVRRLKPQPVDAARAD
FRLGVIAMDVEEQHEAETSLNAAAATFFPGLIEAVKAGAGDEHDPVAAAA
QQAASEIVEALPREATGFVPAAAALAFPGEAMDLLNHLGILWSQRECPRR
ALFYLLASTQMYEA
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mRNA from alignment at P-wetherbeei_contig13436:867..1665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13436.2.1 ID=mRNA_P-wetherbeei_contig13436.2.1|Name=mRNA_P-wetherbeei_contig13436.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=799bp|location=Sequence derived from alignment at P-wetherbeei_contig13436:867..1665+ (Phaeothamnion wetherbeei SAG_119_79)
GACATGAAGGCCATCTTTGCTCGTGTCAACGAGCTTCAGCGGGTCACCGA
TCCAGTCTCGAGGCCCTACGAATCCAAGTACAAGGCAAGGGAGCTCCTGC
AAGACGCTGTGCGTCGCCTCAAGCCGCAACCGGTGGATGTGAGTTCCTGA
CATAGCCTGTTTCGAAGCGTGACACGGCGGGTAGGACGCGTCTCTTTGAG
CTCCCGCCCGGTTTCCGCGACGTCATGGCGGCATTTTCCCTTTGAAGCAA
GGGTCGCTTCTGGCTTCAATGCTTTTCTCGCTTTCCCGTGAACTGAGGGT
CTTCGCTGCACTAGTGAGAAAGTCTTAAGCACTTGACTAAATGGTGCCGC
CATATTTCTGCCATGTTTTCCTGCAAGCCCTCTGCGTCAATTCTGTTGTA
AAATCTGATTCGTCTTATTTCATGCCATGATCTTCTTGGCAGGCTGCGCG
CGCCGACTTTCGGCTGGGCGTCATTGCCATGGACGTCGAGGAGCAGCATG
AGGCGGAGACGTCCCTCAACGCCGCCGCCGCCACGTTCTTCCCGGGCCTC
ATCGAGGCCGTCAAGGCAGGGGCCGGTGACGAACACGACCCGGTGGCGGC
GGCGGCTCAGCAGGCTGCTTCGGAAATCGTGGAAGCATTGCCCCGTGAAG
CTACAGGATTCGTGCCGGCGGCGGCAGCGCTGGCGTTCCCGGGCGAGGCG
ATGGACCTCCTGAATCACCTGGGAATCCTGTGGAGCCAGCGGGAGTGCCC
GCGGCGGGCGCTCTTCTACCTTCTTGCCTCGACGCAGATGTATGAGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13436:867..1665+

>mRNA_P-wetherbeei_contig13436.2.1 ID=mRNA_P-wetherbeei_contig13436.2.1|Name=mRNA_P-wetherbeei_contig13436.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig13436:867..1665+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCCATCTTTGCTCGTGTCAACGAGCTTCAGCGGGTCACCGATCC
AGTCTCGAGGCCCTACGAATCCAAGTACAAGGCAAGGGAGCTCCTGCAAG
ACGCTGTGCGTCGCCTCAAGCCGCAACCGGTGGATGCTGCGCGCGCCGAC
TTTCGGCTGGGCGTCATTGCCATGGACGTCGAGGAGCAGCATGAGGCGGA
GACGTCCCTCAACGCCGCCGCCGCCACGTTCTTCCCGGGCCTCATCGAGG
CCGTCAAGGCAGGGGCCGGTGACGAACACGACCCGGTGGCGGCGGCGGCT
CAGCAGGCTGCTTCGGAAATCGTGGAAGCATTGCCCCGTGAAGCTACAGG
ATTCGTGCCGGCGGCGGCAGCGCTGGCGTTCCCGGGCGAGGCGATGGACC
TCCTGAATCACCTGGGAATCCTGTGGAGCCAGCGGGAGTGCCCGCGGCGG
GCGCTCTTCTACCTTCTTGCCTCGACGCAGATGTATGAGGCG
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