mRNA_P-wetherbeei_contig13426.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13426.1.1
Unique NamemRNA_P-wetherbeei_contig13426.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 8.640e-22
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    7 EDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            +  F L+ +LW V  R  +CKA  CVYRNP+T  S RKHYHA C+H H++G K+ M FHHHQLEK++KHQRSH
Sbjct:  277 DTFFELDESLWRVVTRREICKAEQCVYRNPQTMVSHRKHYHATCSHVHQEGVKKGMRFHHHQLEKVKKHQRSH 349
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.680e-22
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    7 EDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            +  F L+ +LW V  R  +CKA  CVYRNP+T  S RKHYHA C+H H++G K+ M FHHHQLEK++KHQRSH
Sbjct:  655 DTFFELDESLWRVVTRREICKAEQCVYRNPQTMVSHRKHYHATCSHVHQEGVKKGMRFHHHQLEKVKKHQRSH 727
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.380e-17
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 EDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
             DL  L+  LW V  R   C + +C+Y++  T  S R+HYHA C H H+ GPK  MIFHHHQLEKI+KHQR+H
Sbjct:  561 SDLMVLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAH 633
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.390e-17
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    7 EDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
             DL  L+  LW V  R   C + +C+Y++  T  S R+HYHA C H H+ GPK  MIFHHHQLEKI+KHQR+H
Sbjct:  547 SDLMVLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAH 619
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.500e-16
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 GGEDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            G +D   L+  LW V  +  VC +RDC YR+     S R+HYH+NC HTH  G K+ M FHHHQLEK++KHQRSH
Sbjct:  203 GDDDDDGLDKDLWVVVEKGSVCTSRDCTYRDAARIAS-RRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSH 276
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.610e-16
Identity = 40/75 (53.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    1 GGEDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            G +D   L+  LW V  +  VC +RDC YR+     S R+HYH+NC HTH  G K+ M FHHHQLEK++KHQRSH
Sbjct:  332 GDDDDDGLDKDLWVVVEKGSVCTSRDCTYRDAARIAS-RRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSH 405
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A835ZA42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.230e-12
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   64 CKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            C+A+DC  R   T  + R+HYHA C H H  G K  M FHHHQLEKIRKHQR+H
Sbjct:    4 CEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAH 57
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A836CC17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.860e-12
Identity = 35/68 (51.47%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   22 LNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            ++P LW        C+A  C  R P T  + R+HYHA C H H  G K  M FHHHQLEKIRKHQR H
Sbjct:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVH 68
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A835YQW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-9
Identity = 30/54 (55.56%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   64 CKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            C A  C  R+  +  + R+HYHA C H H  GPK  M FHHHQLEKIRKHQ +H
Sbjct:   18 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAH 71
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BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Match: A0A835YVJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.160e-8
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   64 CKARDCVYRNPKTHQSLRKHYHANCAHTHRDGPKRNMIFHHHQLEKIRKHQRSH 225
            C A  C  R      + R+HYHA C H H  GPK  M  HHHQLEK+RKHQ +H
Sbjct:  139 CDAEQCTLREETRRIARRRHYHALCEHRHSAGPKAGMPLHHHQLEKVRKHQSTH 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G0Z5_ECTSI8.640e-2258.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W7_9PHAE8.680e-2258.90MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI6.380e-1753.42Myb-like DNA-binding domain containing protein n=1... [more]
A0A6H5JLY2_9PHAE6.390e-1753.42MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5KQ17_9PHAE1.500e-1653.33MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LH85_ECTSI1.610e-1653.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZA42_9STRA2.230e-1259.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC17_9STRA2.860e-1251.47Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YQW6_9STRA1.030e-955.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVJ8_9STRA2.160e-851.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13426contigP-wetherbeei_contig13426:345..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0Z5
PFAMsMyb_DNA-binding
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-22
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size225
COG categoryADK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.811116-CDS-P-wetherbeei_contig13426:344..5691683185984.811116-CDS-P-wetherbeei_contig13426:344..569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13426 345..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13426.1.1prot_P-wetherbeei_contig13426.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13426 345..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13426.1.1

>prot_P-wetherbeei_contig13426.1.1 ID=prot_P-wetherbeei_contig13426.1.1|Name=mRNA_P-wetherbeei_contig13426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
GGEDLFRLNPTLWTVAPRLVVCKARDCVYRNPKTHQSLRKHYHANCAHTH
RDGPKRNMIFHHHQLEKIRKHQRSH
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mRNA from alignment at P-wetherbeei_contig13426:345..569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13426.1.1 ID=mRNA_P-wetherbeei_contig13426.1.1|Name=mRNA_P-wetherbeei_contig13426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig13426:345..569- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGAGGACCTTTTCAGGCTAAACCCGACGCTGTGGACGGTGGCGCC
GCGGCTCGTGGTCTGCAAGGCGCGCGACTGCGTCTACCGCAACCCGAAGA
CGCACCAGTCGCTGCGCAAGCACTACCACGCCAACTGCGCCCACACGCAC
CGTGACGGGCCGAAGCGCAATATGATCTTCCACCATCACCAGCTGGAGAA
GATCCGCAAGCACCAGCGCTCGCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13426:345..569-

>mRNA_P-wetherbeei_contig13426.1.1 ID=mRNA_P-wetherbeei_contig13426.1.1|Name=mRNA_P-wetherbeei_contig13426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig13426:345..569- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGAGGACCTTTTCAGGCTAAACCCGACGCTGTGGACGGTGGCGCC
GCGGCTCGTGGTCTGCAAGGCGCGCGACTGCGTCTACCGCAACCCGAAGA
CGCACCAGTCGCTGCGCAAGCACTACCACGCCAACTGCGCCCACACGCAC
CGTGACGGGCCGAAGCGCAATATGATCTTCCACCATCACCAGCTGGAGAA
GATCCGCAAGCACCAGCGCTCGCAC
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