mRNA_P-wetherbeei_contig13424.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13424.1.1
Unique NamemRNA_P-wetherbeei_contig13424.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: D7FVS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.800e-49
Identity = 94/166 (56.63%), Postives = 115/166 (69.28%), Query Frame = 1
Query:    1 GFAAQGLLLAEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMRAV-EARDWGRLAEEFGAPFGGVLERGAAXXXXXXXXXXXXXRRELDGLVASTTAYLKLQALWSREE 495
            GFA+QGL LAEE+ P+ A+AV   LSDVPQEF+P+PE TWD+L  +YSVRNNLVLQF+RD+ID+SP+LAE LF RF R+GEL+FS LDGTHVTPNTPD R   +ARDW   A   GA     +E GA                ELD L+ + T+YL+ Q+LW R E
Sbjct:  298 GFASQGLSLAEEWGPKAASAVGSMLSDVPQEFKPSPEATWDLLTDRYSVRNNLVLQFKRDTIDQSPQLAEVLFNRFGRDGELEFSRLDGTHVTPNTPDFRDTRQARDWADRAG-MGAQGDAFVEGGARVAASTASL-------ELDELIKALTSYLRSQSLWVRRE 455          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: A0A836CAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.240e-29
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   73 LSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMRAVEARDWGRLAEEFGAPFGGVLERGAAXXXXXXXXXXXXXRRELDGLVASTTAYLKLQALWSRE 492
            L  VP EF+P P+E W +L  +Y+VRNNLV+QF+ D++D+S RL+ T+F RF R+G LQ+STL G+HVTPNTPD+  V+  +W   A   G P      R A                ELD L+ +   YLK QALW  +
Sbjct:  291 LGGVPDEFKPAPDELWQLLEGEYAVRNNLVVQFKSDTLDQSGRLSRTIFDRFGRDGALQYSTLQGSHVTPNTPDLSEVDLDEW-LTAAAGGGP---AAARAAGVASSGVRASASVAAAELDELIRTVVIYLKSQALWGSD 426          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: A0A7S2UUU1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUU1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.120e-19
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 FAAQGLLLAEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMRAVEARDW 321
            F  QG    E+  P++A  VSD +S++  EF P PEE W  +  QY V+ NL++QF++DSID+SP L++ L  +  R+G L+F  LDG H+TP   D++     DW
Sbjct:  146 FLKQGFEAVEKVAPQIAGIVSDTVSNIEFEFSPDPEEMWQAVEDQYPVKKNLIIQFKKDSIDQSPYLSQLLDEKLDRQGTLEFIRLDGNHLTPVMQDIQ----NDW 247          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: R7Q587_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q587_CHOCR)

HSP 1 Score: 69.3 bits (168), Expect = 9.040e-11
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   28 AEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMRAVEARDW 321
            A + + +V   +  + S    EF PTP+ET  ++R++Y+V  NL++ F RD++ ++  L + L  RF     +    L+GTHVTP TP++   EA D+
Sbjct:  268 ASDVLKKVGDTMKSFASSTTDEFTPTPDETLQLVRSRYNVPENLLISFSRDTLSQNEALEDVLCTRFGARSAV-IRKLEGTHVTPLTPNLGTGEAPDF 364          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: A0A8J6CFW4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFW4_DIALT)

HSP 1 Score: 68.6 bits (166), Expect = 1.750e-10
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   91 EFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFARE-----GELQFSTLDGTHVTPNTPDMRAVEARDWGRLAEE 339
            +F P PEET + +R  Y V +NL+++F  D+I ES  LA  L  RF        G L +  L GTHVTPNTPD+RA    D G  A +
Sbjct:  298 DFTPGPEETLERVRRAYDVSSNLLVRFSADTICESEALARELRARFTAPDTGIGGRLSYKRLRGTHVTPNTPDLRAGVGADAGPAAAQ 385          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: A0A5B8ML86_9CHLO (DUF1350 domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ML86_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 2.900e-9
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   25 LAEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREG---------ELQFSTLDGTHVTPNTPDMRAVEARDWGRLAEEFGAPFGGVLE 369
            L ++ VP       D L     EF PTP+E+   +  +Y    NL++QFR D+IDE+P LAETL  RFA+EG         EL  + + G HVTP       VE +   + +E+  +  GG+++
Sbjct:  301 LIDQLVPIYEDIAQDRL-----EFSPTPDESKAYIEKRYLCTRNLLVQFRNDTIDETPALAETLQNRFAKEGLAGQPSVGLELTVNQVSGDHVTPCKQPPSLVEDQV-SQFSEQSKSFLGGMVD 418          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: U9VHV5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VHV5_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 6.520e-9
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   70 YLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMR 300
            +  D   EF P+P +T D++R +Y+V  NL+++FR+D+ID++  L++ LF+RF +   +Q   L GTH TP   D+R
Sbjct:  141 FAPDFDIEFTPSPGQTLDLVRDRYTVGRNLLIKFRKDTIDQTYDLSDVLFQRFPQFTAIQI--LQGTHTTPVAQDVR 215          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: A0A6I5Q243_9CYAN (DUF1350 domain-containing protein n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A6I5Q243_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-8
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   28 AEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMR 300
            A + +P +   V  +  D   EF P+P +T D++R +Y+V  NL+++FR+D+ID++  L++ L++RF +   +Q   L GTH TP   D+R
Sbjct:  128 ARKSIPMLEQFVQ-FAPDFDIEFTPSPGQTLDLVRDRYTVGRNLLIKFRKDTIDQTYDLSDVLYQRFPQMTTIQI--LKGTHTTPIAQDVR 215          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: K9F6F4_9CYAN (Uncharacterized protein n=4 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9F6F4_9CYAN)

HSP 1 Score: 62.4 bits (150), Expect = 1.490e-8
Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   70 YLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMR 300
            +  D   EF P+P +T +++R +Y++ +NL+++FRRD+ID++  L++ L++RF +   +Q   L GTH TP   D+R
Sbjct:  163 FAPDFDVEFTPSPNQTLNLVRDRYAIGHNLLIKFRRDTIDQTYDLSDVLYQRFPQFTAIQI--LQGTHTTPIAQDVR 237          
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Match: UPI001C023A77 (DUF1350 family protein n=1 Tax=Leptothoe kymatousa TaxID=2651727 RepID=UPI001C023A77)

HSP 1 Score: 62.0 bits (149), Expect = 1.710e-8
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   70 YLSDVPQEFRPTPEETWDMLRTQYSVRNNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMR 300
            +  D   EF P+P +T D++R +Y+V  NL+++FR+D+ID++  L++ L +RF +   +Q   L GTH TP   D+R
Sbjct:  141 FAPDFDVEFTPSPIQTLDLVRDRYTVGRNLLIKFRKDTIDQTYNLSDVLHQRFPQHTAIQI--LKGTHTTPIAQDVR 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13424.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS7_ECTSI2.800e-4956.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAD4_9STRA1.240e-2944.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUU1_9STRA1.120e-1942.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R7Q587_CHOCR9.040e-1134.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A8J6CFW4_DIALT1.750e-1044.32Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A5B8ML86_9CHLO2.900e-935.48DUF1350 domain-containing protein n=1 Tax=Chloropi... [more]
U9VHV5_9CYAN6.520e-940.26Uncharacterized protein n=1 Tax=Leptolyngbya sp. H... [more]
A0A6I5Q243_9CYAN1.240e-836.26DUF1350 domain-containing protein n=3 Tax=Leptolyn... [more]
K9F6F4_9CYAN1.490e-837.66Uncharacterized protein n=4 Tax=Leptolyngbyaceae T... [more]
UPI001C023A771.710e-838.96DUF1350 family protein n=1 Tax=Leptothoe kymatousa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13424contigP-wetherbeei_contig13424:300..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVS7
PFAMsDUF1350
Model size495
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.59e-50
EggNOG OGsCOG1084@1|root,2QSXN@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1350
Ec32 orthologEc-01_001990.1
DescriptionProtein of unknown function (DUF1350)
Cds size495
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.7659132-CDS-P-wetherbeei_contig13424:299..4421683185984.7659132-CDS-P-wetherbeei_contig13424:299..442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13424 300..442 +
1683185984.7762933-CDS-P-wetherbeei_contig13424:907..10071683185984.7762933-CDS-P-wetherbeei_contig13424:907..1007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13424 908..1007 +
1683185984.785777-CDS-P-wetherbeei_contig13424:1196..14481683185984.785777-CDS-P-wetherbeei_contig13424:1196..1448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13424 1197..1448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13424.1.1prot_P-wetherbeei_contig13424.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13424 300..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13424.1.1

>prot_P-wetherbeei_contig13424.1.1 ID=prot_P-wetherbeei_contig13424.1.1|Name=mRNA_P-wetherbeei_contig13424.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
GFAAQGLLLAEEYVPRVATAVSDYLSDVPQEFRPTPEETWDMLRTQYSVR
NNLVLQFRRDSIDESPRLAETLFRRFAREGELQFSTLDGTHVTPNTPDMR
AVEARDWGRLAEEFGAPFGGVLERGAAAAAAAAPVAAAAARRELDGLVAS
TTAYLKLQALWSREE
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mRNA from alignment at P-wetherbeei_contig13424:300..1448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13424.1.1 ID=mRNA_P-wetherbeei_contig13424.1.1|Name=mRNA_P-wetherbeei_contig13424.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1149bp|location=Sequence derived from alignment at P-wetherbeei_contig13424:300..1448+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGCGGCGCAGGGGCTGCTGCTGGCGGAGGAGTACGTGCCGCGGGT GGCGACGGCTGTCAGCGACTACCTGTCGGACGTCCCGCAGGAGTTCCGCC CCACGCCGGAGGAGACGTGGGACATGCTGAGGACCCAGTACAGGTCCGTC GATCCAGCCATCCGGTTGACCTGCGGAGTCCTGCTCTTTTATCATGTTGC CCTACATAAGGCCAGGACCCAGGTGTTGAAGGAGGCCATCTTTCGTTCTG AAGCCGTTTGAGGCTGGATTCATGTTTGTCCCTGCCTCCATGCGATGCAG TCAGTAGTTTGATAGGCAATTTTTTGGTTGTCCACGTTGCCCTGCAACAC ATTTCGCGGAGAACCAGCTAGCTCCGAGTTCCAATTCATATCGAAACGCC AGAAATTAAGCAAGCTGGCACTTACGAAATTACTTGGTATTCTTCACCAG AATATCAAAGCAAACTTAAATATTGAAATTTTATCACTTTAGCTTTGAAA ATTTACACTGTATTTTATTGTACATATTTCTTGAAGTGTACATATACGCC GATTCAAATGCTTCTGAAGCCTTCGTCTTCCTTACTGCATTTGTCATGGT GGCGGCAGCGTGCGCAACAACCTGGTGTTGCAATTCCGTCGGGATTCCAT CGACGAGAGCCCAAGGCTTGCCGAGACGCTCTTCAGGCGCTTTGCGCGAG AAGGCGAGGTGTGTTGGTGGGCGCCGCGCTGCCACGTGCGATTGCTGGCC AGAAACTGGCTGCGATTGATCCTGTCATCGGGCGTGTTCCACCGACTCCC CACCAGACCCATCACATCGTTCATTCATTCTGATTGAATTGCCTGCGTTT TCCGCCGCCTTTTTTGCCTGCGTTCGGCTCCTCTCCACGCGATGCAGCTC CAGTTCTCCACGCTTGACGGGACGCACGTCACACCTAACACGCCCGACAT GAGGGCGGTGGAGGCCCGCGACTGGGGCCGGTTGGCGGAGGAGTTTGGAG CGCCGTTTGGAGGCGTGCTAGAGCGAGGTGCGGCAGCCGCTGCCGCGGCA GCGCCGGTAGCGGCGGCGGCCGCCCGGCGCGAGCTCGACGGTTTGGTGGC TTCGACGACGGCATACCTGAAGCTGCAGGCCCTCTGGAGCAGGGAAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13424:300..1448+

>mRNA_P-wetherbeei_contig13424.1.1 ID=mRNA_P-wetherbeei_contig13424.1.1|Name=mRNA_P-wetherbeei_contig13424.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig13424:300..1448+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCGCGGCGCAGGGGCTGCTGCTGGCGGAGGAGTACGTGCCGCGGGT
GGCGACGGCTGTCAGCGACTACCTGTCGGACGTCCCGCAGGAGTTCCGCC
CCACGCCGGAGGAGACGTGGGACATGCTGAGGACCCAGTACAGCGTGCGC
AACAACCTGGTGTTGCAATTCCGTCGGGATTCCATCGACGAGAGCCCAAG
GCTTGCCGAGACGCTCTTCAGGCGCTTTGCGCGAGAAGGCGAGCTCCAGT
TCTCCACGCTTGACGGGACGCACGTCACACCTAACACGCCCGACATGAGG
GCGGTGGAGGCCCGCGACTGGGGCCGGTTGGCGGAGGAGTTTGGAGCGCC
GTTTGGAGGCGTGCTAGAGCGAGGTGCGGCAGCCGCTGCCGCGGCAGCGC
CGGTAGCGGCGGCGGCCGCCCGGCGCGAGCTCGACGGTTTGGTGGCTTCG
ACGACGGCATACCTGAAGCTGCAGGCCCTCTGGAGCAGGGAAGAG
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