mRNA_P-wetherbeei_contig1342.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1342.1.1
Unique NamemRNA_P-wetherbeei_contig1342.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1342contigP-wetherbeei_contig1342:2..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6Z3
PFAMsBRCT_2,DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N,DNA_ligase_IV
Model size671
Max annot lvl2759|Eukaryota
KEGG rclassRC00005
KEGG koko:K10777
KEGG ReactionR00381
KEGG Pathwayko03450,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000012,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0005958,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006289,GO:0006297,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009506,GO:0009628,GO:0009987,GO:0010165,GO:0010212,GO:0016874,GO:0016886,GO:0030054,GO:0032807,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048046,GO:0050896,GO:0051103,GO:0051716,GO:0055044,GO:0070419,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1990391
Exons2
Evalue8.22e-08
EggNOG OGsCOG1793@1|root,KOG0966@2759|Eukaryota
EC6.5.1.1
DescriptionDNA ligase
Cds size669
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.6806285-CDS-P-wetherbeei_contig1342:2..3411683185984.6806285-CDS-P-wetherbeei_contig1342:2..341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 3..341 -
1683185984.691965-CDS-P-wetherbeei_contig1342:477..8071683185984.691965-CDS-P-wetherbeei_contig1342:477..807Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1342 478..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1342.1.1prot_P-wetherbeei_contig1342.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1342 3..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1342.1.1

>prot_P-wetherbeei_contig1342.1.1 ID=prot_P-wetherbeei_contig1342.1.1|Name=mRNA_P-wetherbeei_contig1342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
IYQKAKESSNVGNPVVMAEEKCDFPYEPEDRAGVISFQDRSEVLDATRNA
RGHENKMKVLLTEKIRKHIGRESLYRLFRLVLPEAGKGKNGAKEKVIAKV
IADRLNLRDEDATRLRNYTEGDKNKQYTGDFARTLQDVLEQQHRTMGRLS
GTITVGDINKRLGKLEKVSRGRQDREREVWFYQTIEDLTPLHGEPRLDAD
TCVCSDGSVCQCVRGKVDLRAEL
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mRNA from alignment at P-wetherbeei_contig1342:2..807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1342.1.1 ID=mRNA_P-wetherbeei_contig1342.1.1|Name=mRNA_P-wetherbeei_contig1342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=806bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:2..807- (Phaeothamnion wetherbeei SAG_119_79)
ATCTATCAAAAGGCGAAAGAGTCCTCAAATGTTGGAAACCCCGTAGTAAT
GGCGGAGGAAAAATGTGATTTCCCGTACGAACCTGAAGACCGCGCTGGAG
TCATCTCATTCCAGGACCGCAGTGAGGTTTTGGACGCGACGAGAAATGCC
AGAGGGCACGAGAACAAGATGAAAGTTCTTCTCACAGAGAAGATCCGGAA
GCACATAGGAAGAGAGTCCCTGTATCGGTTGTTTCGGCTCGTGCTCCCTG
AAGCCGGGAAGGGCAAAAACGGCGCGAAAGAGAAGGTGATTGCCAAAGTG
ATCGCTGACCGACTGAACCTGCGGGACGAGGTAGGATGCGGCGTGCCTTT
TTCAGCCGACTGTCAGCTTGTATTATTGATGACAATAGTTTTGCGATGAT
CTTTTGTGGGCCACCGTGTCAGGACCTGATTCCCATTCCATGTTCTCGCG
CCGGACCCAACCGTAGGATGCGACGCGGCTCAGGAACTACACGGAGGGCG
ATAAGAACAAGCAGTACACCGGCGACTTTGCCCGGACGCTACAGGACGTG
CTGGAGCAGCAGCACCGGACAATGGGCCGCCTCAGCGGCACCATCACCGT
CGGCGATATCAACAAACGCCTCGGGAAGCTGGAAAAAGTCTCTCGGGGGC
GGCAGGACAGGGAGCGAGAGGTGTGGTTCTACCAGACCATCGAAGACCTG
ACGCCGCTGCACGGAGAACCGAGATTGGACGCGGACACATGTGTTTGCAG
CGATGGGAGTGTCTGTCAATGCGTAAGAGGCAAAGTAGATCTGCGGGCAG
AACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1342:2..807-

>mRNA_P-wetherbeei_contig1342.1.1 ID=mRNA_P-wetherbeei_contig1342.1.1|Name=mRNA_P-wetherbeei_contig1342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig1342:2..807- (Phaeothamnion wetherbeei SAG_119_79)
ATCTATCAAAAGGCGAAAGAGTCCTCAAATGTTGGAAACCCCGTAGTAAT
GGCGGAGGAAAAATGTGATTTCCCGTACGAACCTGAAGACCGCGCTGGAG
TCATCTCATTCCAGGACCGCAGTGAGGTTTTGGACGCGACGAGAAATGCC
AGAGGGCACGAGAACAAGATGAAAGTTCTTCTCACAGAGAAGATCCGGAA
GCACATAGGAAGAGAGTCCCTGTATCGGTTGTTTCGGCTCGTGCTCCCTG
AAGCCGGGAAGGGCAAAAACGGCGCGAAAGAGAAGGTGATTGCCAAAGTG
ATCGCTGACCGACTGAACCTGCGGGACGAGGATGCGACGCGGCTCAGGAA
CTACACGGAGGGCGATAAGAACAAGCAGTACACCGGCGACTTTGCCCGGA
CGCTACAGGACGTGCTGGAGCAGCAGCACCGGACAATGGGCCGCCTCAGC
GGCACCATCACCGTCGGCGATATCAACAAACGCCTCGGGAAGCTGGAAAA
AGTCTCTCGGGGGCGGCAGGACAGGGAGCGAGAGGTGTGGTTCTACCAGA
CCATCGAAGACCTGACGCCGCTGCACGGAGAACCGAGATTGGACGCGGAC
ACATGTGTTTGCAGCGATGGGAGTGTCTGTCAATGCGTAAGAGGCAAAGT
AGATCTGCGGGCAGAACTG
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