mRNA_P-wetherbeei_contig13418.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13418.1.1
Unique NamemRNA_P-wetherbeei_contig13418.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A836CM54_9STRA (Tryptophan--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM54_9STRA)

HSP 1 Score: 323 bits (829), Expect = 6.230e-108
Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSLR 651
            GLF YPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQ+C K+K    KE  ALI+KDGARVMSLQ+GT KMSKSDPNDGSRINL DSADVI RK+KKCKTDAF GLEW NPERPEC NLLT+YQA++G  RE V  +V GM WGAFKPLLA+A VAHLSP+Q RY E+++D  YL QVL EGA+AAD++AS+TL  A  AMGFC+ K L+
Sbjct:  153 GLFDYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQYC-KRKRPVLKEPTALILKDGARVMSLQDGTSKMSKSDPNDGSRINLTDSADVIARKIKKCKTDAFDGLEWGNPERPECTNLLTLYQALSGQTREEVEKEVTGMRWGAFKPLLADAAVAHLSPIQLRYEEIMQDKAYLHQVLREGAEAADEVASQTLSWAKDAMGFCSLKDLQ 368
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: D7FKU6_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU6_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 9.870e-99
Identity = 150/217 (69.12%), Postives = 179/217 (82.49%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSLR 651
            GL  YPVLMA+DILLY+ DLVPVGEDQRQHLELTRD+ARRFNDQFC K++ KTFK+ QALIVK+GARVMSL +GT KMSKSDP +GSRINL DS DVI +K+++CKTD  QGLEWDNP+RPEC NLLTIYQAVTG  RE V  +VG MSWG FKPLLA+A V HL PLQARY ++++D  YL +VL +GA+AAD++AS+TL  A +AMG  + K  +
Sbjct:  184 GLLTYPVLMASDILLYRPDLVPVGEDQRQHLELTRDLARRFNDQFC-KRRRKTFKDPQALIVKEGARVMSLTDGTSKMSKSDPVEGSRINLTDSPDVIAKKLRRCKTDMHQGLEWDNPDRPECTNLLTIYQAVTGKTREEVSLEVGDMSWGTFKPLLADATVEHLRPLQARYKDILEDRSYLNKVLRDGAEAADEVASETLGWAKEAMGISSLKDFQ 399
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A6V1Q501_HETAK (Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q501_HETAK)

HSP 1 Score: 299 bits (766), Expect = 8.150e-98
Identity = 151/216 (69.91%), Postives = 175/216 (81.02%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSL 648
            GLF YPVLMAADILLYQ D VPVGEDQRQHLELTRDIA RFNDQF +++    FK+   LI ++GARVMSLQ+GT KMSKS  ND SRINL DS +VI RK+KKCKTD FQG+EWDNPERPEC NLLTIYQA TG  +EAVLA+VG M+WGAFKP+LA+AVV HL+P+QARYAEL+ DP +L +VL EGA AAD++A +TL     AMGF T + L
Sbjct:  194 GLFDYPVLMAADILLYQTDCVPVGEDQRQHLELTRDIAGRFNDQFVKRKMRPVFKQPTPLIAEEGARVMSLQDGTSKMSKSAENDNSRINLNDSPEVIRRKIKKCKTDQFQGMEWDNPERPECTNLLTIYQACTGKSKEAVLAEVGEMNWGAFKPVLADAVVDHLAPIQARYAELMADPTHLNRVLREGAAAADEVAQQTLLWTKNAMGFTTLEDL 409
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A7S1TX50_9STRA (Tryptophan--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX50_9STRA)

HSP 1 Score: 293 bits (751), Expect = 3.870e-96
Identity = 145/212 (68.40%), Postives = 173/212 (81.60%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKT--KTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGF 630
            GLF YPVLMA+DILLYQADLVPVGEDQ+QHLELTRDIARR+ND FC+K K   + F+E +ALIVK+GAR+MSLQ+GT KMSKS  N+ SRI+L D+ DVI RK+KKCKTD FQG+EWDNPERPE  NLL IYQAV+GL REA+LA+V  M+WGAFKPLL +AVV HLSP+Q +Y E++ DP YL  VL +GAD A+++A  TL  A   MGF
Sbjct:  148 GLFDYPVLMASDILLYQADLVPVGEDQKQHLELTRDIARRYNDMFCKKGKKVRRVFREPEALIVKEGARIMSLQDGTSKMSKSAENENSRISLTDTPDVIARKIKKCKTDQFQGIEWDNPERPEAANLLNIYQAVSGLSREAILAEVSEMNWGAFKPLLTDAVVEHLSPIQTKYNEVMADPVYLHGVLKDGADGANEVAEATLSWAKNGMGF 359
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: F0YGR9_AURAN (Tryptophan--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGR9_AURAN)

HSP 1 Score: 288 bits (738), Expect = 1.640e-94
Identity = 144/216 (66.67%), Postives = 170/216 (78.70%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSL 648
            GLF YPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRF+D +C K+K + F+E +ALIVK+GARVMSL +G  KMSKS P DGSRINL+DS D+I  K+KKCKTD  +GLEWDNP RPE  NLL IYQ+VTGL+RE +L DV  +SWGAFKP L +A++AHL P+Q  Y EL  D  +L Q L +GA  AD+IA+KTL+ A  AMG  TR  +
Sbjct:  128 GLFDYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFHDLYC-KRKRRVFREPKALIVKEGARVMSLADGKAKMSKSAPIDGSRINLVDSPDLIASKIKKCKTDQLKGLEWDNPNRPEATNLLNIYQSVTGLEREVILRDVSDLSWGAFKPRLTDAIIAHLDPIQRAYKELAADQLFLSQTLKQGAHRADEIATKTLDDAKGAMGITTRSGV 342
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A6U5CKF4_HEMAN (Tryptophan--tRNA ligase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5CKF4_HEMAN)

HSP 1 Score: 288 bits (738), Expect = 7.650e-93
Identity = 140/221 (63.35%), Postives = 176/221 (79.64%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKT-----KTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSL 648
            GLF YP+LMAADILLYQA LVPVGEDQRQHLEL+RDIARRFND +C+K+       + F++ +ALIVK+GAR+MSL++GT KMSKSDP++GSRINL DS DVI +K+K+CKTD F G+EWDNPERPEC NLL I+QA +G  RE +L +V  M WG FKP+LAE VV HL+P+QARY EL+ D  YL QVL EGA+ A+++A++T++    AMGF +R  L
Sbjct:  248 GLFDYPILMAADILLYQAQLVPVGEDQRQHLELSRDIARRFNDLYCKKKSMPAKGRRVFRDPEALIVKEGARIMSLEDGTSKMSKSDPSEGSRINLSDSPDVIRKKIKRCKTDNFDGIEWDNPERPECTNLLNIFQACSGRSREDILEEVKDMRWGEFKPVLAEVVVEHLAPIQARYQELVDDKTYLHQVLREGAEGAEEVAAQTMQWTKNAMGFTSRADL 468
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A7S2BX70_9STRA (Tryptophan--tRNA ligase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BX70_9STRA)

HSP 1 Score: 279 bits (713), Expect = 2.650e-92
Identity = 145/213 (68.08%), Postives = 167/213 (78.40%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKT--KTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTD-AFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGF 630
            GLF YPVLMAADILLYQA  VPVGEDQRQHLELTRDIARRFND + +K+K   K F++ +ALIV DGARVMSLQ+GT KMSKS  ND SRINLLD  +VI +K+KKCKTD  F+GLEWDNPERPEC NLLTIYQAV+G  +E +  +V  M+WG FKP+LAEA+VAHLSP+Q RY EL+ D  YL  VL EGA  A+ +A  TL  A  AMGF
Sbjct:   10 GLFTYPVLMAADILLYQAGKVPVGEDQRQHLELTRDIARRFNDLYAKKKKRNEKPFRDCEALIVPDGARVMSLQDGTSKMSKSAENDNSRINLLDPPNVITKKIKKCKTDNGFEGLEWDNPERPECTNLLTIYQAVSGKSKEEIGEEVKDMNWGTFKPILAEAIVAHLSPIQDRYHELMNDKPYLYSVLREGALEANMVADDTLSKARTAMGF 222
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A7S4EDW2_9STRA (Tryptophan--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDW2_9STRA)

HSP 1 Score: 283 bits (723), Expect = 8.600e-92
Identity = 143/213 (67.14%), Postives = 169/213 (79.34%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTR 639
            GLF YPVLMAADILLYQA LVPVGEDQRQHLELTRDIARRF+D +C K+K + F+E +ALIVK+GARVMSL +G  KMSKS   D SRINL D    I RK+KKCK+D F GLEWDNPERPE  NLL IYQAVTG++R+A+LA+VG +SWG FKP LA+AVVAHL P+Q +YAE+  D  YL  VL  GA+ AD+ A++TL++A  AMGF  R
Sbjct:  163 GLFDYPVLMAADILLYQAGLVPVGEDQRQHLELTRDIARRFHDLYC-KRKKRVFREPKALIVKEGARVMSLTDGRAKMSKSAELDNSRINLNDDPATIARKIKKCKSDEFTGLEWDNPERPEATNLLNIYQAVTGMERDAILAEVGDLSWGGFKPRLADAVVAHLEPIQLKYAEVSADKAYLSGVLKSGAERADETATRTLDAAKAAMGFAPR 374
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: A0A7S0VG95_9CRYP (Tryptophan--tRNA ligase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VG95_9CRYP)

HSP 1 Score: 285 bits (730), Expect = 1.190e-91
Identity = 138/221 (62.44%), Postives = 175/221 (79.19%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKT-----KTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGFCTRKSL 648
            GLF YP+LMAADIL+YQA LVPVGEDQRQHLEL RDIARRFND +C+K+       + F++ +ALIVK+GAR+MSL++G  KMSKSDP++GSRINL DS +VI +K+K+CKTD F+G+EWDNP+RPEC NLL I+QA +G  RE +LA+V  M WG FKPLLA+ VV HL+P+QARY EL+ D  YL QVL EGA+ A+++A++TL     AMGF +R  L
Sbjct:  247 GLFDYPILMAADILIYQAQLVPVGEDQRQHLELARDIARRFNDLYCKKKSMPAKGRRVFRDPEALIVKEGARIMSLEDGRSKMSKSDPSEGSRINLSDSEEVIRKKIKRCKTDNFEGIEWDNPDRPECTNLLNIFQACSGRTREDILAEVSDMKWGEFKPLLADVVVDHLAPIQARYKELVDDKTYLHQVLREGAEGAEEVAAQTLTWTKNAMGFTSRSDL 467
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BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Match: F0YNJ3_AURAN (Tryptophan--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ3_AURAN)

HSP 1 Score: 276 bits (707), Expect = 3.260e-89
Identity = 138/210 (65.71%), Postives = 165/210 (78.57%), Query Frame = 1 
Query:    1 GLFGYPVLMAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTDAFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLAEAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAMGF 630
            GLF YPVLMAADILLYQA LVPVG+DQRQHLELTRDIARRF+D +C K+K + F+E +ALIVK+G+RVMSL +GT KMSKS P D SRINL D  D+I  K+KKCKTD  +GLEWDNP+RPE  NLL IYQ+VTGL+ EA+L +V  +SWGAFKP L +AVVAHL P+Q  Y E+  D  YL Q L +GA  AD+IA++TL+ A  AMG 
Sbjct:  174 GLFDYPVLMAADILLYQAGLVPVGDDQRQHLELTRDIARRFHDMYC-KRKQRVFREPKALIVKEGSRVMSLTDGTVKMSKSAPLDNSRINLSDPPDLIASKIKKCKTDQVKGLEWDNPDRPEAANLLNIYQSVTGLEHEAILREVSDLSWGAFKPRLTDAVVAHLEPIQRAYKEIAADQHYLSQTLKQGAYRADEIATRTLDDAKSAMGI 382
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13418.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM54_9STRA6.230e-10875.12Tryptophan--tRNA ligase n=1 Tax=Tribonema minus Ta... [more]
D7FKU6_ECTSI9.870e-9969.12Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1Q501_HETAK8.150e-9869.91Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
A0A7S1TX50_9STRA3.870e-9668.40Tryptophan--tRNA ligase n=1 Tax=Phaeomonas parva T... [more]
F0YGR9_AURAN1.640e-9466.67Tryptophan--tRNA ligase n=1 Tax=Aureococcus anopha... [more]
A0A6U5CKF4_HEMAN7.650e-9363.35Tryptophan--tRNA ligase n=1 Tax=Hemiselmis anderse... [more]
A0A7S2BX70_9STRA2.650e-9268.08Tryptophan--tRNA ligase n=1 Tax=Florenciella parvu... [more]
A0A7S4EDW2_9STRA8.600e-9267.14Tryptophan--tRNA ligase n=1 Tax=Pelagomonas calceo... [more]
A0A7S0VG95_9CRYP1.190e-9162.44Tryptophan--tRNA ligase n=1 Tax=Hemiselmis tepida ... [more]
F0YNJ3_AURAN3.260e-8965.71Tryptophan--tRNA ligase n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13418contigP-wetherbeei_contig13418:4..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKU6
Preferred nameWARS2
PFAMstRNA-synt_1b
Model size660
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01867,ko:K02946,ko:K13346
KEGG TC3.A.20.1
KEGG ReactionR03664
KEGG Pathwayko00970,ko03010,ko04146,map00970,map03010,map04146
KEGG ModuleM00178,M00179,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000959,GO:0001568,GO:0001570,GO:0001944,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030154,GO:0030554,GO:0031974,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048514,GO:0048731,GO:0048856,GO:0048869,GO:0070013,GO:0070127,GO:0070183,GO:0071704,GO:0071944,GO:0072358,GO:0072359,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons6
Evalue2.89e-95
EggNOG OGsCOG0180@1|root,KOG2713@2759|Eukaryota
EC6.1.1.2
Descriptiontryptophanyl-tRNA aminoacylation
Cds size636
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13418.1.1prot_P-wetherbeei_contig13418.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13418 28..1689 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.4986663-UTR-P-wetherbeei_contig13418:3..271683185984.4986663-UTR-P-wetherbeei_contig13418:3..27Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13418 4..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.511298-CDS-P-wetherbeei_contig13418:27..541683185984.511298-CDS-P-wetherbeei_contig13418:27..54Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 28..54 +
1683185984.5201402-CDS-P-wetherbeei_contig13418:316..4541683185984.5201402-CDS-P-wetherbeei_contig13418:316..454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 317..454 +
1683185984.5286472-CDS-P-wetherbeei_contig13418:674..7881683185984.5286472-CDS-P-wetherbeei_contig13418:674..788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 675..788 +
1683185984.5378883-CDS-P-wetherbeei_contig13418:965..10551683185984.5378883-CDS-P-wetherbeei_contig13418:965..1055Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 966..1055 +
1683185984.546884-CDS-P-wetherbeei_contig13418:1276..14351683185984.546884-CDS-P-wetherbeei_contig13418:1276..1435Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 1277..1435 +
1683185984.5556076-CDS-P-wetherbeei_contig13418:1581..16891683185984.5556076-CDS-P-wetherbeei_contig13418:1581..1689Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13418 1582..1689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13418.1.1

>prot_P-wetherbeei_contig13418.1.1 ID=prot_P-wetherbeei_contig13418.1.1|Name=mRNA_P-wetherbeei_contig13418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MAADILLYQADLVPVGEDQRQHLELTRDIARRFNDQFCRKQKTKTFKEFQ
ALIVKDGARVMSLQEGTCKMSKSDPNDGSRINLLDSADVIVRKVKKCKTD
AFQGLEWDNPERPECKNLLTIYQAVTGLDREAVLADVGGMSWGAFKPLLA
EAVVAHLSPLQARYAELIKDPQYLGQVLGEGADAADKIASKTLESAMQAM
GFCTRKSLRSP*
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mRNA from alignment at P-wetherbeei_contig13418:4..1689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13418.1.1 ID=mRNA_P-wetherbeei_contig13418.1.1|Name=mRNA_P-wetherbeei_contig13418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1686bp|location=Sequence derived from alignment at P-wetherbeei_contig13418:4..1689+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCTCTTCGGCTACCCCGTCCTCATGGCGGCCGACATCCTCCTCTACCA
GGTTTGTGGGTTCGCGGTTTGCTTGCTGGGAAGATTTCATGTCTCCCTGT
TTCTGTGGATGTTGTCGTCTCGCCCTCATTGCTTTGCAGTTGTGCAACGG
CAAATTCCTATATCTTGTGCAGATATGGTGCTTAAAATCCGCACGGCCAG
AACAGCCCAGAAGTGCGGCCGCATCTGTCTCGATGGACCTCTTGGCCGAC
CGAAACAGGAATGAATCGTTCCTGTGTCCAATGGCGCTTTCTTCTCATTC
TTCCTTCGTGCAGGCGGATTTGGTGCCGGTGGGGGAGGACCAGCGGCAGC
ACCTGGAGCTGACGAGGGATATTGCGCGGCGGTTCAACGACCAGTTTTGC
CGCAAGCAGAAGACAAAAACCTTTAAGGAATTCCAGGCCCTTATCGTCAA
GGTGCAGACTGATACAGTCGTTACTGCGAGGTGTTCCGTACCTTGCCTTG
TTTGCATTCTCTTGTCAACTGCCATTATGCCGTCAGAGCGGGAACCGTTC
TGTGCACCATCTTATATGGTCGGCTATCGCGAGATGCGCTGACCGAGCAT
CCGCTGGGTCGTGCTGTTTCTTCTTTCGGGCGGGGAATTTCGGGGACGAA
TGAACGAACTGTTTAGTGCAGGACGGAGCTCGGGTCATGTCTTTGCAAGA
GGGCACGTGCAAGATGAGCAAGAGCGACCCCAACGACGGCAGTCGCATCA
ACCTCCTCGACTCCGCGGACGTCATCGTCCGAAAGGTGCGCCGTAAAACG
CAATACAATCGTTTTCTTTAGTCGTGCAATTGTTTCGTGGTTTCGCCGTC
GGCAATGTGCGGCGTCGGAATGCAAGAGGCTTTGTATCTTGCTTCAAGCG
CTATTGGCGTCTATGCTAAGCGGGTTATTCGTTCTGGCGGCCCGACGCGT
GGCTCGCGGTAGGTCAAGAAATGCAAGACGGATGCCTTCCAGGGCCTCGA
GTGGGACAACCCGGAGCGGCCGGAGTGCAAGAACCTCTTGACCATCTACC
AGGTGCGGCGCCAATAGGCGGGGCTTCCTCCTGTCGCGAAGGCCCAATAG
CCGAAAGCGGAATTTTTCCGCCATCCATCCTGCCACATCTAAAATTCCGG
TCTCAGCCGTGGAAGTTCTCCTGCTGAATGCTGCCAATTTTCTCTTCCTC
AAATCTTGCCCTTCCGCCTCCTCGCCCGTTTTTATCTTTGCTCCGCACTG
AAACGGCGCACCGTCTCGTTCAGGCCGTTACGGGTCTGGACCGGGAGGCG
GTGCTGGCAGACGTGGGGGGCATGTCTTGGGGCGCCTTCAAGCCGCTGCT
GGCGGAAGCCGTGGTGGCGCATCTCTCGCCGCTGCAGGCGCGATACGCCG
AGCTCATCAAGGACCCTCAGTATCTCGGGCAGGTGCGTTGTCTTTGTTGG
AGCGTTGTAGATGTGTAGCTTGTATATCGCTTTCGGACGCACGCCTGTTT
CTTCAAAGCATCGAAACCTCGTTGCGATTTTCTTGTGAAAGACGTGGCCG
AACACTTTTCCTTTGTTTGCTCCGGCAGGTCTTGGGCGAGGGAGCAGACG
CGGCGGACAAGATTGCGTCAAAGACGCTTGAATCTGCCATGCAGGCCATG
GGTTTTTGCACCCGCAAGTCCCTTCGATCGCCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13418:4..1689+

>mRNA_P-wetherbeei_contig13418.1.1 ID=mRNA_P-wetherbeei_contig13418.1.1|Name=mRNA_P-wetherbeei_contig13418.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig13418:4..1689+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCGACATCCTCCTCTACCAGGCGGATTTGGTGCCGGTGGGGGA
GGACCAGCGGCAGCACCTGGAGCTGACGAGGGATATTGCGCGGCGGTTCA
ACGACCAGTTTTGCCGCAAGCAGAAGACAAAAACCTTTAAGGAATTCCAG
GCCCTTATCGTCAAGGACGGAGCTCGGGTCATGTCTTTGCAAGAGGGCAC
GTGCAAGATGAGCAAGAGCGACCCCAACGACGGCAGTCGCATCAACCTCC
TCGACTCCGCGGACGTCATCGTCCGAAAGGTCAAGAAATGCAAGACGGAT
GCCTTCCAGGGCCTCGAGTGGGACAACCCGGAGCGGCCGGAGTGCAAGAA
CCTCTTGACCATCTACCAGGCCGTTACGGGTCTGGACCGGGAGGCGGTGC
TGGCAGACGTGGGGGGCATGTCTTGGGGCGCCTTCAAGCCGCTGCTGGCG
GAAGCCGTGGTGGCGCATCTCTCGCCGCTGCAGGCGCGATACGCCGAGCT
CATCAAGGACCCTCAGTATCTCGGGCAGGTCTTGGGCGAGGGAGCAGACG
CGGCGGACAAGATTGCGTCAAAGACGCTTGAATCTGCCATGCAGGCCATG
GGTTTTTGCACCCGCAAGTCCCTTCGATCGCCATGA
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