mRNA_P-wetherbeei_contig1341.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1341.2.3
Unique NamemRNA_P-wetherbeei_contig1341.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: D8LQ55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ55_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 2.250e-94
Identity = 175/301 (58.14%), Postives = 208/301 (69.10%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSLGQDDR-RRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWRAEKRRRLQEEAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVEEXXXXXXXXXXXXXPSKTVATAPAAVSAATSAAVRAHVALPDQDRIKAELLRLKKEALLAKL 992
            MARNEEKAQ M+NKW TMK+ + + +R RRPFL+S+CD+L DAE WRR+IIRET+K V  IQNAG GEH+IRDLNDQINKLLRER HW+ RI ELGGPDY     K++DADGRELPGGGGY YFGAA+ LPGVRELF KS+ E PRRTR D+Y+ ITPDYYG+RDEEDGVL+ KEA +E RKV  AV+EW+AEKRRRL++   +A                              G+ ++ XXXXXXXXXXXX                SA VRAHV +P QD IK  +L+ KK  LL +L
Sbjct:    1 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETSKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRILELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKGLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVMEKRKVQSAVSEWQAEKRRRLEDGEEEAG-----------------------------GDADDEXXXXXXXXXXXXXXXXX-----------SAEVRAHVPVPSQDAIKEAILKRKKLTLLKRL 261          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: W7TA77_9STRA (Pre-mrna-splicing factor isy1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA77_9STRA)

HSP 1 Score: 276 bits (707), Expect = 6.470e-88
Identity = 134/191 (70.16%), Postives = 159/191 (83.25%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSLGQDDR-RRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWR 662
            MARNEEKAQAMLNKW+TMKK L   D+ RRPFL+SDC  L +AERWRR+II+E TKKV+++QNAGLGEHR+RDLNDQINKLLRE+ HW+ RIKELGGPDY     + +DADGRELPGGGGY+YFGAA+DLPGV+ELFQKS  +  RRTRGD+YK I PDYYG+RDEEDG+LLEKE   E   +  AV +++
Sbjct:    1 MARNEEKAQAMLNKWLTMKKDLATGDKERRPFLSSDCHVLSEAERWRRQIIKEVTKKVSEVQNAGLGEHRLRDLNDQINKLLREKYHWQKRIKELGGPDYNRIEPRAYDADGRELPGGGGYRYFGAAKDLPGVKELFQKSAPKEMRRTRGDMYKGIDPDYYGYRDEEDGILLEKEREAEKEAIAAAVRQFK 191          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: A0A7S2S7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7Y0_9STRA)

HSP 1 Score: 262 bits (669), Expect = 6.140e-82
Identity = 160/302 (52.98%), Postives = 197/302 (65.23%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSL--GQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWRAEKRRRLQEEAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVEEXXXXXXXXXXXXXPSKTVATAPAAVSAATSAAVRAHVALPDQDRIKAELLRLKKEALLAKL 992
            MARNEEKA ++LNKWVTMK     G   +RRP+LA++CD L  AERWR ++I+E +K + +IQNAGLGEHRIRDLNDQINKLLRE+ HW+ RI+ELGGPDY     ++FDADGRELPGGGGYKYFGAA++LPGVRELFQ    +RPRRTR  +YK ITPDYYG+RDE+D  LL KEA  E   ++EA A+ +  KR+R      +  XXXXXXXXXXXX                 GE                       A A  SAA+S   +AHV +P QD +K  +L  +K+ LL +L
Sbjct:    1 MARNEEKAMSLLNKWVTMKSEFAKGGGPQRRPYLATECDDLRQAERWRLDVIKEVSKGIGEIQNAGLGEHRIRDLNDQINKLLREKFHWQKRIRELGGPDYNAIEPRSFDADGRELPGGGGYKYFGAAKELPGVRELFQAEAPQRPRRTRAQIYKTITPDYYGYRDEDDEDLLRKEALAEKEAIEEADAQHQRLKRQRXXXXXXNGEXXXXXXXXXXXXDDAAAMAAAAHSNF---GE-----------------------AMARASAASSTVAKAHVPVPSQDEVKQAILDHRKQQLLQQL 276          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: A0A8J2WI20_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WI20_9STRA)

HSP 1 Score: 253 bits (647), Expect = 3.730e-77
Identity = 130/208 (62.50%), Postives = 161/208 (77.40%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSL--GQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLE-KEAAIENRKVDEA-VAEWRAEKRRRLQEEAVDA 704
            MARNEEKAQ MLNKWVTMK+    GQ   RRPFLA+DC SL D E+WR +I+RE TKKVA IQNAGLGEH+IRDLND INKLLRE+ HW+ RI++LGGPDY     K  DA+GR LPGGGGY+YFGAARDLPGV+ELF+    ++ RRTRGD+ +N+TPDYYG+RD++DG  L+ +EAA+E  +V+EA  AE  A   RR + +  ++
Sbjct:    1 MARNEEKAQLMLNKWVTMKEQFNSGQAAERRPFLATDCSSLADCEKWRMQIVREVTKKVAAIQNAGLGEHKIRDLNDNINKLLREKGHWQRRIRDLGGPDYNALEPKALDAEGRPLPGGGGYRYFGAARDLPGVKELFEAPPPQKKRRTRGDMMRNVTPDYYGFRDDDDGGALKAQEAAVERPRVEEARQAELAARAERRARNDGAES 208          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: F0XZD9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZD9_AURAN)

HSP 1 Score: 243 bits (619), Expect = 6.280e-76
Identity = 119/180 (66.11%), Postives = 142/180 (78.89%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSL--GQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIE 626
            MARNEEKAQ MLNKWVTMK+    G    RRPFLA+DC SL D E+WR +I+RE T+KVA+IQN GLGEH+IRDLND INKLLRE+ HW+ RI++LGGPDY     K  DA+GR LPGGGGYKYFGAARDLPGV+ELF+     + RRTRGD++K++TPDYYG+RD+ D  L  KEA +E
Sbjct:    1 MARNEEKAQQMLNKWVTMKQEFNAGNIAERRPFLATDCKSLADCEKWRLQIMREITRKVAEIQNQGLGEHKIRDLNDTINKLLREKGHWQFRIRDLGGPDYNALEPKALDAEGRPLPGGGGYKYFGAARDLPGVKELFEAPPPVKKRRTRGDMFKHVTPDYYGFRDDNDPSLAAKEAVVE 180          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: K3X334_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X334_GLOUD)

HSP 1 Score: 238 bits (608), Expect = 6.980e-74
Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSLGQDDR-RRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGV-LLEKEAAIENRKVDEAVAEW-RAEKRRRLQ 686
            MARNEEKAQ++LN+W +MK+      + RRP+LAS CD++ DAERWRR+IIRE +KKVADIQNAG GEH IRDLND+INK +RE+ HWE RI ELGGPDY+ +  + +DADG  + GGGGYKYFGAA++LPGVRELFQK E    +RTR D++KNI PDYYG+RDEED   LL++E  +E      A+ EW R E  R+ Q
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFSDTFKNRRPYLASQCDNIKDAERWRRQIIREISKKVADIQNAGSGEHVIRDLNDEINKRMREKRHWEKRIVELGGPDYSRSQPQAYDADGSSVQGGGGYKYFGAAKNLPGVRELFQKEERAPKKRTRQDMFKNIEPDYYGFRDEEDDPQLLQEELEVEAALQKAAIEEWNRVEAERKSQ 201          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: A0A8K1CPD6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPD6_PYTOL)

HSP 1 Score: 236 bits (602), Expect = 5.390e-73
Identity = 119/200 (59.50%), Postives = 151/200 (75.50%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSLGQDDR-RRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEW-RAEKRRRLQ 686
            MARNEEKAQ++LN+W +MK+      + RRP+LAS+CD+L DAERWRR+II+E +KKVADIQNAGLGEH IRDLND+INK +RE+ HWE RI EL G DYT +    +DADG  + GGGGYKYFGAA++LPGVRELF+K     P+R R ++YK+I PDYYG R+++D  +LE E A E R   +A+  W +AEK R  Q
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFSDTFKNRRPYLASECDNLKDAERWRRQIIKEISKKVADIQNAGLGEHVIRDLNDEINKRIREKYHWEKRIIELNGSDYTRSQPSAYDADGTVVQGGGGYKYFGAAKNLPGVRELFEKEALPEPKRVREEMYKHIEPDYYGLREDDDAAMLEAEQAAETRLRKDAMEAWDKAEKERLAQ 200          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: UPI001884C45C (pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884C45C)

HSP 1 Score: 234 bits (597), Expect = 2.470e-71
Identity = 120/204 (58.82%), Postives = 144/204 (70.59%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSLGQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWRAEKRRRLQEEAVDA 704
            MARN EKA   L +W       G +  RRP+LAS+CD L DAERWR +I+RE  +KVA IQNAGLGE RIRDLND+INKLLRE+ HWE RIKELGGPDY  T  K  D +G+E+PG  GY+YFGAARDLPGVRELF++     PR+TR +L K+I  DYYG+ D+EDGVL+ +E   E R V   +AEWRA K   +  E  DA
Sbjct:    1 MARNAEKAMTTLARWRQAHSEAGPEKTRRPYLASECDQLPDAERWRNQIVREVARKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEARIKELGGPDYARTGPKMLDREGKEVPGNRGYRYFGAARDLPGVRELFEQEPPPPPRKTRAELMKDIDADYYGFLDDEDGVLVPREREQERRAVAAWLAEWRARKEAGVDTEEGDA 204          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: A0A7S0XKX4_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XKX4_9STRA)

HSP 1 Score: 235 bits (599), Expect = 5.130e-71
Identity = 115/168 (68.45%), Postives = 137/168 (81.55%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSL--GQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGDLYKNITPDYYGWRDEE 590
            MARNEEKAQ MLN+WVTMKK    G    RRPFLAS+C SL +AE+WR +IIRE T+KVA IQN+GLGEH+IRDLNDQINKLLRE+ HW+ RI+ELGGPDY      + DADGR LPGGGGYKYFGAA+DLPGVR+LF+ +   + RRTR ++YK +TPDYYG+RD+E
Sbjct:   12 MARNEEKAQLMLNRWVTMKKEFTAGSFAERRPFLASECGSLGEAEKWRLQIIRELTRKVAHIQNSGLGEHKIRDLNDQINKLLREKGHWQKRIRELGGPDYNAMEPASVDADGRALPGGGGYKYFGAAKDLPGVRDLFKPAGPAKRRRTRAEMYKRVTPDYYGFRDDE 179          
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Match: A0A0G4GYU9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GYU9_VITBC)

HSP 1 Score: 234 bits (596), Expect = 7.610e-71
Identity = 137/304 (45.07%), Postives = 177/304 (58.22%), Query Frame = 3
Query:   93 MARNEEKAQAMLNKWVTMKKSL--GQDDRRRPFLASDCDSLYDAERWRREIIRETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYTHTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAER-PRRTRGDLYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWRAEKRRRLQEEAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVEEXXXXXXXXXXXXXPSKTVATAPAAVSAATSAAVRAHVALPDQDRIKAELLRLKKEALLAKLS 995
            MARN EKAQ+MLN+WV++K  +  G    RRP L++ C ++ D E WRR+I++ET++++ +IQNAGLGEHR+RDLNDQINKLLRER HWE RIK+LGGPDY  +  +  DA G EL G GGYKYFGAA+DLPGVRELF+K    R P+R R +LY+ ITPDYYGWRDEED  +L  E A E     +AV +WR E +     +                                   +V               PS          S+A +A  +A+VA+P  D IK  +L  KK+ALL K +
Sbjct:    1 MARNAEKAQSMLNRWVSLKSGISKGVTAGRRPRLSTQCSNVEDCEFWRRQIVKETSRRIQEIQNAGLGEHRLRDLNDQINKLLRERHHWEERIKQLGGPDYKASAPRALDAHGFELTGHGGYKYFGAAKDLPGVRELFEKDAGSRAPKRLRAELYRGITPDYYGWRDEEDATILLAEQAKEAELRADAVEKWRTEHQTAQSSQPSSLHDTL--------------------------AQVASESLDLDPDLSQPPPS----------SSAAAADFKAYVAVPTSDEIKELILEKKKQALLEKYA 268          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1341.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ55_ECTSI2.250e-9458.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TA77_9STRA6.470e-8870.16Pre-mrna-splicing factor isy1 n=1 Tax=Nannochlorop... [more]
A0A7S2S7Y0_9STRA6.140e-8252.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WI20_9STRA3.730e-7762.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XZD9_AURAN6.280e-7666.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3X334_GLOUD6.980e-7461.19Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CPD6_PYTOL5.390e-7359.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001884C45C2.470e-7158.82pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Poll... [more]
A0A7S0XKX4_9STRA5.130e-7168.45Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A0G4GYU9_VITBC7.610e-7145.07Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1341contigP-wetherbeei_contig1341:3910..5551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ55
Preferred nameISY1
PFAMsIsy1
Model size1228
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K12870
KEGG Pathwayko03040,ko04530,map03040,map04530
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0071008,GO:0071012,GO:0071013,GO:0071014,GO:0071020,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons3
Evalue8.91e-96
EggNOG OGsKOG3068@1|root,KOG3068@2759|Eukaryota
Ec32 ortholog descriptionIsy1-like splicing
Ec32 orthologEc-26_006080.1
Descriptiongeneration of catalytic spliceosome for second transesterification step
Cds size918
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.2708254-UTR-P-wetherbeei_contig1341:3909..41271683185984.2708254-UTR-P-wetherbeei_contig1341:3909..4127Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1341 3910..4127 -
1683185984.3074517-UTR-P-wetherbeei_contig1341:5459..55511683185984.3074517-UTR-P-wetherbeei_contig1341:5459..5551Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1341 5460..5551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.2834857-CDS-P-wetherbeei_contig1341:4127..46521683185984.2834857-CDS-P-wetherbeei_contig1341:4127..4652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 4128..4652 -
1683185984.291327-CDS-P-wetherbeei_contig1341:4859..50651683185984.291327-CDS-P-wetherbeei_contig1341:4859..5065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 4860..5065 -
1683185984.299102-CDS-P-wetherbeei_contig1341:5272..54591683185984.299102-CDS-P-wetherbeei_contig1341:5272..5459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 5273..5459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1341.2.3prot_P-wetherbeei_contig1341.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1341 4128..5459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1341.2.3

>prot_P-wetherbeei_contig1341.2.3 ID=prot_P-wetherbeei_contig1341.2.3|Name=mRNA_P-wetherbeei_contig1341.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp
MARNEEKAQAMLNKWVTMKKSLGQDDRRRPFLASDCDSLYDAERWRREII
RETTKKVADIQNAGLGEHRIRDLNDQINKLLRERIHWETRIKELGGPDYT
HTVTKTFDADGRELPGGGGYKYFGAARDLPGVRELFQKSEAERPRRTRGD
LYKNITPDYYGWRDEEDGVLLEKEAAIENRKVDEAVAEWRAEKRRRLQEE
AVDAALGGGSAAVGAATAAVGAAVGGADEDDDVLGEVEEMTVKAAAAAAA
AAPSKTVATAPAAVSAATSAAVRAHVALPDQDRIKAELLRLKKEALLAKL
SEGSG*
back to top

mRNA from alignment at P-wetherbeei_contig1341:3910..5551-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1341.2.3 ID=mRNA_P-wetherbeei_contig1341.2.3|Name=mRNA_P-wetherbeei_contig1341.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1642bp|location=Sequence derived from alignment at P-wetherbeei_contig1341:3910..5551- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCCGAAAACAACGATTCTGATCTCGACGAGTGTATTTCCGCAGTGAC CTCAACCGCCTCCTTCGCGCCGCCGCCGCAGCTGCGAACAAGATGGCGCG CAATGAGGAGAAGGCGCAGGCCATGCTCAATAAGTGGGTCACAATGAAGA AGTCGCTGGGTCAGGACGACCGCCGCCGGCCGTTCTTAGCGAGCGATTGT GACAGCCTGTACGACGCGGAAAGGTGGCGACGAGAGATCATCCGCGAGAC GACGAAGAAGGTCGCAGACATCCAAAACGGTGAGGTTTGCTTTGATTAGC ATGGTTTACTCTCCCTCTTCTGCAATCTCTTTCTATGATACATGCCGTTC ACCGCAGACATTTTGCGCTGCGGTTGCTCTTGAACGCTCTCTTGTCATCA TCTTTCCTTTCCTTCGTTCGTTATCGCTTCTCCTCTTTGGCACCTTTTGC ACTTTGTGCCCATCTTCCATCGACTCACAACTCCAGCGGGCCTGGGCGAG CACCGGATTCGGGATCTGAACGACCAAATCAACAAGCTCTTGAGAGAACG GATTCACTGGGAAACACGCATCAAAGAGCTGGGCGGCCCAGACTACACGC ACACCGTGACGAAGACCTTTGATGCGGACGGGAGGGAGCTGCCGGGCGGC GGGGGCTACAAGTACTTCGGCGCGGCGAGAGACCTGCCGGGGGTGAGCTG GTCATTGGGGTTGAGTTTCTAGTAAATTGCTAAACGTAAGTGCTGCCTTT TGCACAGGCTTCGCGAAAACGCCCGCTTGCCTCGTCTGGAGTGCCCTGCC TCTGGAAGGTCTCTCTCGCCACTGGATGGCTCTGGCATCCCGAGCACGCA AACCGCCCGTTCCAATGTTTCCTCTCTTACCGCTGCACAAAACGGCCAGG TCCGCGAGCTCTTCCAAAAATCGGAGGCGGAGCGGCCCCGGAGGACCCGT GGCGACCTCTACAAGAACATTACGCCGGACTACTACGGCTGGCGGGACGA GGAGGACGGCGTGCTGCTGGAAAAAGAGGCTGCCATCGAGAACCGGAAGG TCGACGAGGCCGTGGCGGAGTGGCGGGCGGAGAAGCGGCGGCGGCTGCAA GAGGAGGCGGTTGATGCCGCGCTGGGAGGCGGCAGCGCTGCCGTCGGGGC GGCCACAGCGGCAGTAGGGGCGGCGGTCGGCGGAGCGGACGAGGACGATG ACGTGCTCGGAGAGGTGGAGGAGATGACGGTGAAGGCAGCGGCGGCGGCC GCGGCGGCGGCGCCCAGCAAGACGGTGGCAACGGCGCCGGCGGCCGTCTC GGCGGCGACGAGCGCGGCGGTGCGGGCCCATGTGGCCCTGCCGGACCAGG ACCGGATCAAGGCGGAGCTGCTGCGGCTCAAAAAGGAGGCTCTGCTGGCC AAACTTTCTGAAGGCAGTGGGTGACCGGCGGACTGACCGGGACGCTGACC GGCCGGCGGCTGACTGCTCGGGATTTGCTCTGGCAAGTGCTGGCGCCGCG AAAGCAGAACAAAGGAACTTCGGCGAGTTCGCTGCATCGCAATGTCGAGC GGTGCGGCCATGGAGATGGCGAAGGCGCATTGCAGTTGAAACATATTAAA AGTCAAGATGGGGTTCGCTGCTTTCGCTTTGTAACGTTTCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1341:3910..5551-

>mRNA_P-wetherbeei_contig1341.2.3 ID=mRNA_P-wetherbeei_contig1341.2.3|Name=mRNA_P-wetherbeei_contig1341.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig1341:3910..5551- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCAATGAGGAGAAGGCGCAGGCCATGCTCAATAAGTGGGTCAC
AATGAAGAAGTCGCTGGGTCAGGACGACCGCCGCCGGCCGTTCTTAGCGA
GCGATTGTGACAGCCTGTACGACGCGGAAAGGTGGCGACGAGAGATCATC
CGCGAGACGACGAAGAAGGTCGCAGACATCCAAAACGCGGGCCTGGGCGA
GCACCGGATTCGGGATCTGAACGACCAAATCAACAAGCTCTTGAGAGAAC
GGATTCACTGGGAAACACGCATCAAAGAGCTGGGCGGCCCAGACTACACG
CACACCGTGACGAAGACCTTTGATGCGGACGGGAGGGAGCTGCCGGGCGG
CGGGGGCTACAAGTACTTCGGCGCGGCGAGAGACCTGCCGGGGGTCCGCG
AGCTCTTCCAAAAATCGGAGGCGGAGCGGCCCCGGAGGACCCGTGGCGAC
CTCTACAAGAACATTACGCCGGACTACTACGGCTGGCGGGACGAGGAGGA
CGGCGTGCTGCTGGAAAAAGAGGCTGCCATCGAGAACCGGAAGGTCGACG
AGGCCGTGGCGGAGTGGCGGGCGGAGAAGCGGCGGCGGCTGCAAGAGGAG
GCGGTTGATGCCGCGCTGGGAGGCGGCAGCGCTGCCGTCGGGGCGGCCAC
AGCGGCAGTAGGGGCGGCGGTCGGCGGAGCGGACGAGGACGATGACGTGC
TCGGAGAGGTGGAGGAGATGACGGTGAAGGCAGCGGCGGCGGCCGCGGCG
GCGGCGCCCAGCAAGACGGTGGCAACGGCGCCGGCGGCCGTCTCGGCGGC
GACGAGCGCGGCGGTGCGGGCCCATGTGGCCCTGCCGGACCAGGACCGGA
TCAAGGCGGAGCTGCTGCGGCTCAAAAAGGAGGCTCTGCTGGCCAAACTT
TCTGAAGGCAGTGGGTGA
back to top