mRNA_P-wetherbeei_contig1341.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1341.1.1
Unique NamemRNA_P-wetherbeei_contig1341.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: A0A4Q3BG33_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3BG33_9BACT)

HSP 1 Score: 143 bits (360), Expect = 2.180e-35
Identity = 110/305 (36.07%), Postives = 162/305 (53.11%), Query Frame = 1
Query:    1 LSELRQMVLRRQAATGRSLLRVFRHFDRSRSGWVGPCDAAEALKDLRI---------AVPAAGAAALVAFCYGDFATLVADPHHGELERELCRQMAAQLETVGPSYR--LAQVFRRR---RGECLDGDGGAEELEEWMPAPRFAAALAALGLRLDAVDMQRLLHRFDLHGDGRLSPAHFLTFCRITVFSSPEWRHAAEEGRRQAAAEEEAATVTVQRREC----GRWPVPG---LSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRAI 852
            L+ LR ++L R    GRSL  +F+HFDR R  +    D  +A +DLRI         A+   G  +L   C+G+F T V D  H  LE ++  Q+AA  E  G ++   LAQ    R   R +  + D  A+E +  +    F A L   GL L + D+ RL  RFD+HG+   S   FL   ++ + S+P WRHA +  R Q  A +EAA +   R+E     GR  +PG   L+ +L+AM   LGI V+++ +++ +AA+AL APLP  W       GR  + +  +G SRW+HPLD H+R +
Sbjct:   28 LATLRDIILARYRK-GRSLQEIFQHFDRDRKRFFDREDFVQATRDLRIEVSDKVASLAIQQMGVDSLDCVCFGEFKTFVLDAEHRLLELQVTEQLAALFEQQGRAFLSFLAQALLCREPDRQQQEERDAVADE-QPLLDKATFLAGLRKAGLVLSSADLSRLADRFDVHGNDFCSSRRFL---KMLLRSAP-WRHAEKVLRYQDRAMQEAARL---RQELVSNPGRQTMPGAPPLTEELIAMCEYLGICVLSEQNMIWIAADALKAPLPVNWVALKDESGRTFFHNRLSGQSRWEHPLDPHFRKL 323          
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: D8LUA6_ECTSI (WW domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA6_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 7.480e-31
Identity = 85/203 (41.87%), Postives = 108/203 (53.20%), Query Frame = 1
Query:  277 VGPSYRLAQVFRRRRGECLDGDGGAEELEEWMPAPRFAAALAALGLRLDAVDMQRLLHRFDLHGDGRLSPAHFLTFCRITVFSSPEWRHAAEEGRRQAAAEEEAATVTVQRRECGRWPVP-----------GLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRAI 852
            +G S + A V R    E   GD GAE  ++ + A  F A L  LGLRL   D  RL+ RFD+HGDG LS   F++     V SS  W  A      Q  A+EEA       R  G WP              L +D+V MAR +GI V +DS LL +AA+ALAAPLP GW++  + +GR  Y +   G SRWDHPLD H+R +
Sbjct:  931 LGVSAKAAAVDRHSCSESGLGDVGAEGEKQGVSAEEFLAGLRGLGLRLSVSDAHRLIVRFDVHGDGHLSTRRFISM----VESSRPWTRALTRLAHQEEADEEADACLRAYRVHGEWPSAVEQSQGQGVALTLDADIVEMARYIGIRVSSDSSLLWIAADALAAPLPNGWAMHKSKEGRWFYHNDLTGQSRWDHPLDPHFRQL 1129          
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: A0A6H5J9P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 7.500e-31
Identity = 85/202 (42.08%), Postives = 109/202 (53.96%), Query Frame = 1
Query:  280 GPSYRLAQVFRRRRGECLDGDGGAEELEEWMPAPRFAAALAALGLRLDAVDMQRLLHRFDLHGDGRLSPAHFLTFCRITVFSSPEWRHAAEEGRRQAAAEEEAATVTVQRRECGRWP-----------VPGLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRAI 852
            G S + A V R+   E   GD G E  ++ + A  F A L  LGLRL   D  RL+ RFD+HGDG LS   F++     V SS  W  A      Q  A+EEA       +  G WP           V  L +D+V MAR LGI V +DS LL +AA+ALAAPLP GW++  + +GR  Y +   G SRWDHPLD+H+R +
Sbjct:  938 GMSAKAAAVDRQSCSESGLGDVGVEGEKQGVSAEEFLAGLRGLGLRLSVSDAHRLIVRFDVHGDGHLSTRRFISM----VESSRPWTRALTRLAHQEEADEEADACLRAYKVHGEWPSAVEQSQGQDAVLTLDADIVEMARYLGIRVSSDSSLLWIAADALAAPLPNGWAMHKSREGRWFYHNDLTGQSRWDHPLDSHFRQL 1135          
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: A0A836CFZ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.460e-23
Identity = 88/270 (32.59%), Postives = 116/270 (42.96%), Query Frame = 1
Query:  187 YGDFATLVADPHHGELERELCRQMAAQLETV---GPSYRLAQVFRRR-------------------RGECL---DGDGGAEELEE---WMPAPRFAAALAALGLRLDAVDMQRLLHRFD--------------------LHGDGRLSPAHFLTFCRITVFSSPEWRHAAEEGRRQAAAEEEAATVTVQRRECGRWPVPGLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRAI 852
            +G+FA+ V DPH+ +L    C  +A QL      G    L  +F  R                   RG      D DG  +E       +PA  F A LA LGLRLDA D +R+L R+                      +G G +    FL   R    +S +WR A                           P      D+V MA+ LG+ V +D+ LL +A  AL APLP GW + AA DGRR + HAE+G +RWDHPLD +YRA+
Sbjct:  561 FGEFASFVTDPHYADLHARACGALAQQLSVAAQGGALLPLEAIFAPRAPRDDGGGEGTEPLWDDGTRGGTASADDADGAQQETSTSRYMVPAEAFLAGLARLGLRLDARDAKRVLVRYGGAXXXXXXXXXXXXXXXXXLAYGAGGVDVGRFLAAVR----ASRQWRAAXXXXXXXXXXXXXXXXXXXXXXXXAPDP------DVVRMAQCLGLRVRSDAALLWIAEAALTAPLPDGWRICAAPDGRRYFFHAESGTARWDHPLDPYYRAL 820          
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: A0A835YGE3_9CHLO (Aurora kinase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YGE3_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 1.320e-8
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  634 PGLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRA 849
            P    ++VA  + LG+ VV D+ LLH+A  AL APLP GW+V    +G   + +A    S ++HP+D HYRA
Sbjct: 1501 PPTQDEIVAYGKYLGMDVVEDAELLHIAEWALTAPLPEGWTVHLDGEGNEFFYNAATNASTYEHPMDEHYRA 1572          
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Match: A0A2K3DP80_CHLRE (WW domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DP80_CHLRE)

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  634 PGLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAAADGRRCYLHAEAGISRWDHPLDAHYRA 849
            P    ++VA  + LG+ VV D+ L+H+A  AL APLP GW+V    +G   + +A    S ++HP+D HYRA
Sbjct:  983 PPTQEEIVAYGKYLGMDVVEDADLIHIAEWALTAPLPEGWTVHLDGEGNEFFYNAATNASTYEHPMDEHYRA 1054          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A4Q3BG33_9BACT2.180e-3536.07Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
D8LUA6_ECTSI7.480e-3141.87WW domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J9P3_9PHAE7.500e-3142.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFZ4_9STRA2.460e-2332.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGE3_9CHLO1.320e-843.06Aurora kinase n=1 Tax=Edaphochlamys debaryana TaxI... [more]
A0A2K3DP80_CHLRE3.000e-841.67WW domain-containing protein n=3 Tax=Chlamydomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1341contigP-wetherbeei_contig1341:1079..2395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog653948.CCA25839
PFAMsWW
Model size852
Max annot lvl2759|Eukaryota
KEGG koko:K16462
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.38e-08
EggNOG OGs2CED3@1|root,2S3GE@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-14_004290.1
Cds size834
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.206981-UTR-P-wetherbeei_contig1341:1078..10961683185984.206981-UTR-P-wetherbeei_contig1341:1078..1096Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1341 1079..1096 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185984.217569-CDS-P-wetherbeei_contig1341:1096..12521683185984.217569-CDS-P-wetherbeei_contig1341:1096..1252Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 1097..1252 +
1683185984.2264068-CDS-P-wetherbeei_contig1341:1414..15701683185984.2264068-CDS-P-wetherbeei_contig1341:1414..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 1415..1570 +
1683185984.235417-CDS-P-wetherbeei_contig1341:1873..23951683185984.235417-CDS-P-wetherbeei_contig1341:1873..2395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1341 1874..2395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1341.1.1prot_P-wetherbeei_contig1341.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1341 1097..2395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1341.1.1

>prot_P-wetherbeei_contig1341.1.1 ID=prot_P-wetherbeei_contig1341.1.1|Name=mRNA_P-wetherbeei_contig1341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=278bp
MVLRRQAATGRSLLRVFRHFDRSRSGWVGPCDAAEALKDLRIAVPAAGAA
ALVAFCYGDFATLVADPHHGELERELCRQMAAQLETVGPSYRLAQVFRRR
RGECLDGDGGAEELEEWMPAPRFAAALAALGLRLDAVDMQRLLHRFDLHG
DGRLSPAHFLTFCRITVFSSPEWRHAAEEGRRQAAAEEEAATVTVQRREC
GRWPVPGLSSDLVAMARRLGISVVTDSHLLHVAAEALAAPLPAGWSVAAA
ADGRRCYLHAEAGISRWDHPLDAHYRAI
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mRNA from alignment at P-wetherbeei_contig1341:1079..2395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1341.1.1 ID=mRNA_P-wetherbeei_contig1341.1.1|Name=mRNA_P-wetherbeei_contig1341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1317bp|location=Sequence derived from alignment at P-wetherbeei_contig1341:1079..2395+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAGTGAGCTCCGGCAGATGGTGCTGCGGCGCCAGGCGGCCACGGGGCG CTCTCTCCTTCGGGTTTTCCGGCACTTTGACCGCAGCCGAAGCGGGTGGG TCGGCCCTTGCGACGCTGCGGAGGCTTTGAAGGATCTTCGAATCGCCGTG CCTGCAGCCGGCGCCGCCGCACTCGTGCTGGCGATCGCCAGAGGCTGCCA TCACCGGTGGGACCGCATAACCTACCGGAGCGGCAGCCGTCGTGACCCGA GCGGGGTCGCTAACGAGGCGTCTGTCAGCGTCATCGACGACACTGCGCAT GGCGGCGGTGGCAACAACGACGACGGCCGCGACGAGGTGGCGTTTTGTTA CGGCGATTTTGCCACGCTCGTGGCCGATCCGCACCATGGCGAGCTGGAGC GCGAGCTATGTCGGCAGATGGCGGCGCAGCTCGAGACAGTGGGCCCGAGC TATCGGCTGGCGCAAGTCTTTCGACGACGGAGGGGCGAATGTGTGGAGAG CGGAGGCGACGGCGCTCGAAGAGGAGATACGGAAGGTGAAGGGCTGTCTG GGCGTTGCTTGGGCAGCAGAGGCGACAACAATGGTGGCAGCGGCGGCAGC AGCGTTGGCAACACTGCCACCCACGACACTACCGTCGGCGGCAACGGCAG CGGCGGCAGCGGGGACGGCAGTGGTAGCGGCGATGGCGGCGGCGGCGGCG CCGGCGGTAGCAATATCGCTGTGAGCAGCGAGGGCGATAAGGACCTTGGT GCCGCGGGAAGTGCCGGCATCCCCTGTGCATACGTGCCGGCGGAGCTGGA TGGGGATGGAGGCGCGGAGGAGCTGGAGGAGTGGATGCCGGCGCCGCGCT TCGCCGCGGCGCTGGCTGCTCTGGGACTGCGCCTTGACGCAGTTGATATG CAGCGGCTGCTCCACCGCTTCGACTTGCACGGCGACGGGCGCCTCTCTCC GGCGCACTTCCTCACCTTTTGTCGCATCACAGTCTTTTCTTCGCCCGAGT GGCGGCACGCCGCCGAGGAGGGGCGGCGCCAGGCTGCTGCGGAGGAGGAG GCGGCAACGGTAACGGTGCAGCGGCGGGAGTGCGGCCGGTGGCCGGTCCC CGGCCTGAGCTCCGACTTGGTGGCAATGGCACGGCGGCTGGGAATCAGCG TCGTGACGGACAGTCATTTGCTGCACGTGGCGGCGGAGGCGCTCGCGGCA CCGCTGCCGGCGGGCTGGTCGGTGGCAGCTGCGGCCGATGGGCGGCGCTG CTACCTGCATGCCGAGGCTGGCATCTCGCGCTGGGACCATCCTCTCGACG CTCATTACCGGGCTATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1341:1079..2395+

>mRNA_P-wetherbeei_contig1341.1.1 ID=mRNA_P-wetherbeei_contig1341.1.1|Name=mRNA_P-wetherbeei_contig1341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig1341:1079..2395+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGCGGCGCCAGGCGGCCACGGGGCGCTCTCTCCTTCGGGTTTT
CCGGCACTTTGACCGCAGCCGAAGCGGGTGGGTCGGCCCTTGCGACGCTG
CGGAGGCTTTGAAGGATCTTCGAATCGCCGTGCCTGCAGCCGGCGCCGCC
GCACTCGTGGCGTTTTGTTACGGCGATTTTGCCACGCTCGTGGCCGATCC
GCACCATGGCGAGCTGGAGCGCGAGCTATGTCGGCAGATGGCGGCGCAGC
TCGAGACAGTGGGCCCGAGCTATCGGCTGGCGCAAGTCTTTCGACGACGG
AGGGGCGAATGTCTGGATGGGGATGGAGGCGCGGAGGAGCTGGAGGAGTG
GATGCCGGCGCCGCGCTTCGCCGCGGCGCTGGCTGCTCTGGGACTGCGCC
TTGACGCAGTTGATATGCAGCGGCTGCTCCACCGCTTCGACTTGCACGGC
GACGGGCGCCTCTCTCCGGCGCACTTCCTCACCTTTTGTCGCATCACAGT
CTTTTCTTCGCCCGAGTGGCGGCACGCCGCCGAGGAGGGGCGGCGCCAGG
CTGCTGCGGAGGAGGAGGCGGCAACGGTAACGGTGCAGCGGCGGGAGTGC
GGCCGGTGGCCGGTCCCCGGCCTGAGCTCCGACTTGGTGGCAATGGCACG
GCGGCTGGGAATCAGCGTCGTGACGGACAGTCATTTGCTGCACGTGGCGG
CGGAGGCGCTCGCGGCACCGCTGCCGGCGGGCTGGTCGGTGGCAGCTGCG
GCCGATGGGCGGCGCTGCTACCTGCATGCCGAGGCTGGCATCTCGCGCTG
GGACCATCCTCTCGACGCTCATTACCGGGCTATA
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