mRNA_P-wetherbeei_contig1339.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1339.1.1
Unique NamemRNA_P-wetherbeei_contig1339.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1339contigP-wetherbeei_contig1339:23..4636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.3565812-CDS-P-wetherbeei_contig1339:22..541683185983.3565812-CDS-P-wetherbeei_contig1339:22..54Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1339 23..54 +
1683185983.3640008-CDS-P-wetherbeei_contig1339:4524..46361683185983.3640008-CDS-P-wetherbeei_contig1339:4524..4636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1339 4525..4636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1339.1.1prot_P-wetherbeei_contig1339.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1339 23..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1339.1.1

>prot_P-wetherbeei_contig1339.1.1 ID=prot_P-wetherbeei_contig1339.1.1|Name=mRNA_P-wetherbeei_contig1339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
VSRGGGGPNPGSAPPLSKPQQPPTATAAPLPPRPRRCRSIIYAANFS*
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mRNA from alignment at P-wetherbeei_contig1339:23..4636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1339.1.1 ID=mRNA_P-wetherbeei_contig1339.1.1|Name=mRNA_P-wetherbeei_contig1339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4614bp|location=Sequence derived from alignment at P-wetherbeei_contig1339:23..4636+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCCGCGGCGGGGGCGGCCCCAACCCAGGGTGGATGCCGGGGGGGGG
GGGGGGGGGGGGGGGGGGTGGTCGTCGTCGTGCAAACGCCCAGTCCACTT
CTGAGGACCAACCGGAACGTTCCCTCCAACTACGGCGGCGGCGGTGCCTG
CGCCACAGTCAGATGGGGCGTGCGGAAAGGCGGCGGCACCGTTATCGGCG
GTATCGATGACAAAGAAGGAAGGGACAACGACGTCCTTGGTGGCGGCCCC
TGCGGTAGCAGGCGGTGTGCTACTGCCGAATCAGGATATAGCTCTGCCGG
CGAAAGGTGATGCCCGTTGCAGCGATGTATGAGGCAGGCAACCGCGGCGG
CAGCAATGGCGGTGGCGGCGGCGGCGGTGGTGGCGGCGACGGGCACGGAT
GAGGTCCGACGTCGACGTGCACTTTCCGTCGCAATACGTCATGCTCTCTG
CGCGCTAGCAGATCAACCCATGGTTGACACAGCGATGGCGTTAGTGGCGA
TGGCATTCTTGCGATGGCACCCGTGACCTTGGCGCCTGCATTGCCAGTGC
CATCGGGACACGCTGACCTGCTTTTCCGGGTTCGTGCGACGAAGGCTCGG
TGCTGGAGAAGCGAGACAGCGTCGAGGCGGCACCGGCTTCCAGCATGGCT
GCAATGTGTTGGACACCGTCAGAAGCGGGCGGCGAAGCTGCCAAGCAGGC
GCTCCTCTCGGCATTGTTTGCATCGGAGGATGTGAGGCATTGGTGGCGGC
TGTGGCGGCGACAGCGACTGCGGCTGCGGCGGCGATGCGGGCGGCGCTCG
CCACAAATCGCCCGCCCGCAAGCGTGAGGCGGCTGCCGTCTTTCTTGCTG
CTGAGGCTCAGGAGGCGCCACATACGGCCCCTACGGATACCGAAGGCAGC
CGCAGTTCGAGCCGAAGTAGGGACAGCGGCTACAAGATGTCCAGCGGTAG
AAGCACGAGCCAAAGCAGCAGCGAAACCCTCAACGTGAATTCAGCAGTGA
GCGCAGCAGTCACCTGAGCCGCTGTCAGTGGCAGCCCTCGCAGCAGCAAT
CGCGATTGCAAGAGCGGTGACCAGCGTACGTGGAGGTACCGGCGCCGCCA
CTCTGGAACACGAAGCTTCCGCACATGAACTGCAGCGCGGCGGCAAGCGA
TTGATCCAGCCCGGAAAATGACATAGCGTCTCCGTCGGCGACGCGGACGA
GGACACCGACGACGACGTAGCTCCAGAATTTGCGGCCATGATGGCGGCGG
CCGCGGCTGCGCCTTCAAGGCGCACTCTCGTTAGGCTGAGCGCGTGACGC
CGTCACATTGAGCGGTACAGCGCGCAGCTGGCTTAGTGAGCCGACGGCTG
AGGCGAGAAAGACAGAGGCTGCGGCAGCGAACTTCGCCGCGGCTGCAACG
GCTCCGGCTGCGGCGTCGCCGATAGCGGCGGCGACGGCGGTGGGTACGGA
GGCGACAGCGACGGGGTCTGCCGCAGTGCCTTTTGATGCCCGGCATTGCT
AGCAAACAGCTGGCGCGACGTCGCTCGTCGAGCTGGAGGCTGAACATTGC
GCCAAGCCGGCTTGAAAGGTACGGCCGCGGAGCATAACTGTCGCGCCTCG
ATTCCGCTGCCGTCATTCACGTTCTTCTCGGATCGATGTCGGCCGCTTTC
GGCGCTTTCACGACAGTGCCTGAGTCGGCGCCCGCGCCGGTGTATTATGC
CGAGCAGGTGGCCACTGGCTGGTCGTTCCCGGATCCATCCTTGCTGCCGC
TCCTGTCGGCAGCGGGCGTCTTCGGAAACGGTAAGCGCTACCTGGGCGGC
CGCGCAGCTACCGTGCTAAAGGAACACGGCCACGCCTTCTTCTTTCGACC
TGACAAATTGCTGGTGATGGCACAGGCGCCGGCATGAGGCGCGATGCATG
CGATGGATCTCAAGAATGGCGAGCGCCACAGGCCCGAGGAAGACGAGAAG
AGAGTAAATTAGGATAGCAGATGAAACGATTCACCACTTGAAAGAGCCGG
TTGAACCGCTGCCGCCGCCAGCTGCCGCCGCCGGCACAGGCCAGGCGAGA
TTGGCTGACCGATACTCTGACAATAAACTGCTTCGTGGAAGCGGCGGAAC
CCTGCTCCAGTTCCACGTGTTTGGGCGGCAGCGAGGCCTAGCTGCGGCCG
GCGCCGTCGTCGGCCGGAACGTCTCCGCCCACCGATCGGTCGTTCTTCTC
TTGGCGGGTCGTGGCCGCCACAGCCAGGGAGATAGATGGCTATGGAGGCA
GCAGCGGTGGCAATGACGGCGGCAATGGTGGCGCCGGCGTCAGCTATGCC
GTGATCGCCGCCGTTGCCAACGAATATGGACGCCGACAGGAAAAGATTCG
GCTTGCGCGGCGGGCGGCTCGGCTTAGCCGACGTCGCAACTACGGCTTAG
CCGACGTCGCAACTACTCCGGTTCCCTGGACCTCTTTGAAAAGGGGTGAA
CGGCAGCAGCGGCAATGGCAGGAGTACAGGCAGCGTTGCGGCGCAACAGA
ACGCGCCGAACGCGCAGAATGTGATGCTGGCAGCGGTGACTCCGCCGGCC
GAACTGTCCGCGTGGTGTTTCCGGACGCTGACAGGACGCCATCGACGTTC
GGCACGCCGTCCATGGCGACGGGAGCGGGGTCAGCGACAGACATGGTGCT
GTAGCCGGCTGTGACAGCGGCCGGGAGCCGGGCACGTTCCCGCAGCCACC
GTCCCCGCCATCTTTCTTACTGCAGCTGGCACCGACGCCATCTTTCTTAC
TGCCGCTGCGCTGCCGCTGCTGCCTTCTGAACCGCAGACACCGCAATCTT
CCTTCTGATGCTGATCGACACCGATAAAGATCGTCGCGCTAGCTGTGGCG
GCGCAGTCGTGACTGTCACAGTGGCAACAGTGGCGGCATGGGCCTCTGAA
GAGAGCAAAGGTGGTGAAGTGGACGACAGTGCCGGGGGCGGCGGTGCCAG
TGATGCGGCGGCAGTAACCCTGACAACACGAAACCACGTAAGCTTTGAAG
GGTTCGAGCCGTCCTGCCAGCGATTTTTTTACTCAATCAGTAATGATGAA
ATGGGAATATCACGGGGCAACAAAGGCCACGCGATTCTTAGATCGAAACT
TGTGCCGAAAAGGGTTGAGATACGGCGCTGGCGGCGACAGCTGCGACAGG
GGTGGCGACGGCTCGGCGCCCAGGAAAAGACGACCTCCTTTCATGGTGGT
CTCAGTTGCGGCGTTGCTGCAACGGTGGCCTGAGCTGCGGCGTTGCCGCA
ACGGTGGCCTGAGCTGCGGCGTTGCCACAACGGTGGCCTCAGCTTCGGCG
CTGCCGCAACACAGACAAAATCAAACACCAAAACCTCAATGCTAAATTCG
TCTGTATTGCTGTAAGGAATGGGGATAGAGAGGAACGCGTCAGCCATATT
TTGGAGTAATGGTTGGTGCCAGGGCGGGAGTCATGATGGTTGGAATCGGG
AGTTTGATAGACTGGCTGTTAGGATTGGCGGTTTCTGTTCAATCGGTGCT
TGTGCAGCCAGCAGAACAAGGAAATATAGGGAAAGAAGGAGAGAGGCAAA
GTGTGCGTAGGATTCTTACCGGTCTGGAGGCTGCGGCTTTTCTTAAGTCT
TACGTAAACCCCAACTCGAACTGGACTGCAGCCGTTGAACAAAGTAGGAT
GGGGAAAGATAGAGAGGGCAAAGTGTGCGTAGGGTTCTTAACGGTCTGGA
GGCTGCGACTTTTCTTAAGTCTGACGTAAACCCCGATTCAGAACTGGACT
GCAGCCGGTGATAAGTGTTTGTTGGCTTGAGGGCAGAATACACGGTTCCA
ACGGGGGTGACCCGTCACTGCAAACATCAGGCGCCCCATACTGGGCCACA
GCTGCGGCAACGGGTGCGGCGACCGCCTTCCGCCATTTCACGATCGCAGC
GATGATGTCATTCAGAGCTTCCACGAGAGCTCGCTGCTCGTGCCGACATT
GGCCCCAAGAAAGCTGGGGGCACTGTCGGCGAGAGCGCCGGCGCCGGCCG
CGGTGTACTTCCAGTAAAACCTTGTTTGGCGGTATGGTGCACCACATCAC
ATACGTGCAGTCCGTGAAGGGACAGGCAGAGCGCGGGCTGCCGCTACATA
GGCGCCGCAGCTACAGCTGTTGGTGCCTCACGATGCCCGAGTTGGGATTG
GCTGGGATGGCTACACGTCTGGAAGGCGGACGGATTTGGCGTTGTTTGAA
AAGGCACGCTCACGATGACGCTTTCTGGAGAAACGCGAAGTGGAGCATTA
TAGTATATTCATAGATCGGAGGCGGAGCAAGGGTGCGACCAGTAATGCCG
CTTTGATGTTAGGCCGAATACGACACCTATTCTCCCCTCACATACAAACC
GCCGTTTCCCAGATCAGGGCCTGTACCCTTAAGAGGAAAGGAGTGCTCTT
CCTGCTGCCGTGGCCGTATGACAACAGGTTGAAATTTCAGCAGCAAACAA
ACTTGATCGGCCACTTCACTCTACGCCACATTCCTGTGAGCACTCTCAAA
AGGAGCGCTCCGCCGCTTTCAAAGCCTCAGCAACCGCCAACTGCTACAGC
CGCTCCGCTCCCTCCTCGACCCCGCCGTTGCCGCTCTATCATTTACGCTG
CAAATTTCTCCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1339:23..4636+

>mRNA_P-wetherbeei_contig1339.1.1 ID=mRNA_P-wetherbeei_contig1339.1.1|Name=mRNA_P-wetherbeei_contig1339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig1339:23..4636+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCCGCGGCGGGGGCGGCCCCAACCCAGGGAGCGCTCCGCCGCTTTC
AAAGCCTCAGCAACCGCCAACTGCTACAGCCGCTCCGCTCCCTCCTCGAC
CCCGCCGTTGCCGCTCTATCATTTACGCTGCAAATTTCTCCTAG
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