mRNA_P-wetherbeei_contig13378.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13378.1.1
Unique NamemRNA_P-wetherbeei_contig13378.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: D7FQS1_ECTSI (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 9.320e-28
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 2 
Query:  227 QNVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            +N  HYSGLARL GA G+A LQEGFGA+LYYN  VP+ST SHRGR MKYGVIS + L+ DL +W WLY +GRL KPV +++
Sbjct:   71 RNRDHYSGLARLFGAGGVAWLQEGFGAKLYYNALVPLSTTSHRGRSMKYGVISTKHLAEDLTDWTWLYTAGRLQKPVRIIQ 151
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A835YMA3_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.210e-21
Identity = 50/102 (49.02%), Postives = 59/102 (57.84%), Query Frame = 2 
Query:  230 NVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYG----------------------VISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            N  HYS + R +GA G ARLQE +GAR+ Y T VP+  G H GRLMKYG                      VIS  DL +DL +WRWLYA+GR+HKPV  LR
Sbjct:   78 NPHHYSSICRAMGAPGTARLQENYGARMLYTTMVPIPIGPHTGRLMKYGMXXXXXXXXXXXXXXXXXXXXXVISTGDLVTDLTQWRWLYAAGRMHKPVQTLR 179
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BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A0N5AWB6_9BILA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AWB6_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 2.480e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2 
Query:  230 NVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPV 457
            N  HYS L RL+G++ + +LQ+ +GAR+Y+NT V      H GR+MKYGV+S+ DL  DLL+WRWL+ +GRLHKPV
Sbjct:   62 NSKHYS-LMRLLGSSVVTQLQQKYGARVYFNTRV-----RHMGRMMKYGVVSVEDLQHDLLDWRWLFLAGRLHKPV 131
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BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A267G5P5_9PLAT (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=4 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267G5P5_9PLAT)

HSP 1 Score: 89.0 bits (219), Expect = 4.030e-18
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 2 
Query:  236 SHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVS 460
            SHYSG+  L GA  +AR+QEG GA +Y+NT VP +     GR +KYGV+S+  L +DL EWRWLY +GRLHKPV+
Sbjct:   67 SHYSGMGSL-GAGAVARIQEGLGAGVYFNTLVPAA----EGRTVKYGVVSVDSLLADLTEWRWLYLAGRLHKPVA 136
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A7S1CAN4_9STRA (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAN4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.320e-18
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  227 QNVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            +N  HYS L  L G A +AR+Q  FGARL+YNT V +       RLMKYGVIS  DL  DL+ WR +YASGR+HKPV +LR
Sbjct:   53 RNRDHYSFLGAL-GPAFVARVQTRFGARLWYNTLVSLPPPHGPARLMKYGVISTADLVDDLVNWRSMYASGRMHKPVRVLR 132
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A1W4W624_AGRPL (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4W624_AGRPL)

HSP 1 Score: 87.4 bits (215), Expect = 1.810e-17
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 2 
Query:  215 ATSLQNVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            A  L+N SHYS + +++GA  IA+LQE  G+++YYNT VP+      G L+KYGV+S +DL +DLLEW  LY +GRLHKPV +++
Sbjct:   64 ANLLENSSHYS-ILKILGANWIAKLQENSGSKVYYNTLVPID-----GLLIKYGVVSTKDLVTDLLEWSDLYLAGRLHKPVEVIK 142
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BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: UPI001E275175 (phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E275175)

HSP 1 Score: 87.0 bits (214), Expect = 2.180e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  227 QNVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            QN SHYSGL +  G   +++ QE FGA++YYNT VP+      G ++KYGVIS RD+ +DLLEW  LY +GRLHKPV +L+
Sbjct:   65 QNPSHYSGL-KYFGHNFVSKFQENFGAKIYYNTLVPIE-----GVMIKYGVISTRDMVTDLLEWSDLYLAGRLHKPVEILK 139
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A225UP26_9STRA (Phosphatidate cytidylyltransferase, mitochondrial (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UP26_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.210e-17
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  227 QNVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRG-RLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSML 466
            +N  HYS L + +GAA +A  QE FGA +YYNT VP+ TG   G RL+KYGV+S + L  DLL W+ LY SGR+HKPVS+L
Sbjct:   60 RNPHHYSVL-KYLGAANVAAFQENFGAGVYYNTLVPL-TGKLLGTRLIKYGVVSSKTLCDDLLAWKTLYLSGRMHKPVSIL 138
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A2A2L9F6_9BILA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2L9F6_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 4.910e-17
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:  230 NVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPV 457
            N SHYS L RL+G   +AR+Q+ + AR+YYNT V V       RL+KYGVIS  DL  DLL+WRW+Y +GRLHKPV
Sbjct:   70 NPSHYS-LVRLLGHKTVARMQQNWAARVYYNTHVRVGK-----RLIKYGVISTDDLKCDLLDWRWIYVAGRLHKPV 139
[Close]
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Match: A0A0D6M8W9_9BILA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A0D6M8W9_9BILA)

HSP 1 Score: 82.8 bits (203), Expect = 5.160e-17
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 2 
Query:  230 NVSHYSGLARLVGAAGIARLQEGFGARLYYNTSVPVSTGSHRGRLMKYGVISLRDLSSDLLEWRWLYASGRLHKPVSMLR 469
            N SHYS L R VGA  + + Q   GAR+YYNT V V  GS R   MKYGVI+  DL+ DLL+W+WLY +GRLHKPV  +R
Sbjct:   61 NPSHYS-LFRCVGANALTKYQTRLGARIYYNTHVRV--GSRR---MKYGVIATDDLNRDLLDWKWLYVAGRLHKPVLDVR 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13378.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS1_ECTSI9.320e-2865.43Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A835YMA3_9STRA6.210e-2149.02Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A0N5AWB6_9BILA2.480e-1855.26Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A267G5P5_9PLAT4.030e-1857.33Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A7S1CAN4_9STRA8.320e-1856.79Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A1W4W624_AGRPL1.810e-1751.76Phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI001E2751752.180e-1754.32phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A225UP26_9STRA4.210e-1756.79Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A2A2L9F6_9BILA4.910e-1757.89Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A0D6M8W9_9BILA5.160e-1757.50Phosphatidate cytidylyltransferase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13378contigP-wetherbeei_contig13378:750..1807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQS1
Preferred nameTAMM41
PFAMsMmp37
Model size469
Max annot lvl2759|Eukaryota
KEGG koko:K17807,ko:K21121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0070013,GO:0070567,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Exons3
Evalue1e-11
EggNOG OGsKOG2986@1|root,KOG2986@2759|Eukaryota
EC2.3.1.259
Descriptionphosphatidate cytidylyltransferase activity
Cds size441
COG categoryS
BRITEko00000,ko01000,ko03029,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.1352608-UTR-P-wetherbeei_contig13378:749..7671683185983.1352608-UTR-P-wetherbeei_contig13378:749..767Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13378 750..767 +
1683185983.1753378-UTR-P-wetherbeei_contig13378:1797..18071683185983.1753378-UTR-P-wetherbeei_contig13378:1797..1807Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13378 1798..1807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185983.1466422-CDS-P-wetherbeei_contig13378:767..9771683185983.1466422-CDS-P-wetherbeei_contig13378:767..977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13378 768..977 +
1683185983.156059-CDS-P-wetherbeei_contig13378:1241..13231683185983.156059-CDS-P-wetherbeei_contig13378:1241..1323Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13378 1242..1323 +
1683185983.1651282-CDS-P-wetherbeei_contig13378:1648..17971683185983.1651282-CDS-P-wetherbeei_contig13378:1648..1797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13378 1649..1797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13378.1.1prot_P-wetherbeei_contig13378.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13378 768..1797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13378.1.1

>prot_P-wetherbeei_contig13378.1.1 ID=prot_P-wetherbeei_contig13378.1.1|Name=mRNA_P-wetherbeei_contig13378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MTELLESMPPVDFAAAYGSGALEQHGYKYDGMNPTSLPMLDLMLGVEDPA
AWHADNLRRQGERARGHFSAERVALLRVGAAGRGRWHRATAGGIWRKAVL
QHVGARVDGLASWAPDEVRRHLPAGPLQRLARVAVALRFGPVAQAC*
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mRNA from alignment at P-wetherbeei_contig13378:750..1807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13378.1.1 ID=mRNA_P-wetherbeei_contig13378.1.1|Name=mRNA_P-wetherbeei_contig13378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig13378:750..1807+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTCGACGACGGCGAGATGACCGAGCTTCTCGAGTCGATGCCGCCAGT
AGACTTTGCTGCAGCGTACGGCTCGGGGGCTTTGGAACAGCACGGTTACA
AGTATGACGGCATGAACCCGACGTCGCTGCCCATGCTGGACTTGATGCTT
GGCGTCGAAGACCCTGCAGCTTGGCACGCCGACAATCTTCGAAGGCAAGG
CGAGCGAGCGAGGGGCCACTTCTCTGCAGTAGCTTCGATTTTTCTCCCTG
AGGCCGTGCGGGCTTGCGCATTCATTTACATATGTAAGAGAGAGCACCTG
CCAATATCGCTCCTTTCACTTCGCTGGCTGCCCGCCGCTGGGAAGTTCTC
ATCTCTTTTCACTTCGCTGGCTGCCCGCCGCTGCGAAGTTCTCGTCTCTT
CTTTTCTCGGACTTGTGTGTCTCTTTTGTCCTTTGTCGGCGACGCGGGCC
GTCGTGCATATCGGCGCTTCTCCAAAAACATCGCGCGCGCAGGAACGTGT
CGCACTACTCAGGGTTGGCGCGGCTGGTCGGGGCCGCTGGCATCGCGCGA
CTGCAGGAGGGATTTGGCGCAAGGGTGAGTTGGTTCCATAAAAATGGCTT
TCTACATCTACACGGTTGACCTTACAGAGCAACGAATCTGCAGTTACTCT
TGAAATTGCCCAGAAGTGTTCGTGCAGCTCGTGTGCTGCCTTTCCTTCGA
TCCTTTGAGGCTTGGTTACGGGTGAGGTAGTGAGTCCTTGCAATCCGTGA
TGCATGTTCGCCCTGCCATCTTCGCAACGGGTGTCCGCGTGATCTCTCAT
CGACTCGCTCACTCGGCAATTTGCATCGTCACCTCCCCTGGTTCCCTGGT
TTCGGCTGGATCCGATCTGTCAACTGCGATGCATTCGGCCGGCCTTTAGC
TGTACTACAACACGTCGGTGCCCGTGTCGACGGGCTCGCATCGTGGGCGC
CTGATGAAGTACGGCGTCATCTCCCTGCGGGACCTCTCCAGCGACTTGCT
CGAGTGGCGGTGGCTCTACGCTTCGGGCCGGTTGCACAAGCCTGTTAGCA
TGCTGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13378:750..1807+

>mRNA_P-wetherbeei_contig13378.1.1 ID=mRNA_P-wetherbeei_contig13378.1.1|Name=mRNA_P-wetherbeei_contig13378.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig13378:750..1807+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGAGCTTCTCGAGTCGATGCCGCCAGTAGACTTTGCTGCAGCGTA
CGGCTCGGGGGCTTTGGAACAGCACGGTTACAAGTATGACGGCATGAACC
CGACGTCGCTGCCCATGCTGGACTTGATGCTTGGCGTCGAAGACCCTGCA
GCTTGGCACGCCGACAATCTTCGAAGGCAAGGCGAGCGAGCGAGGGGCCA
CTTCTCTGCAGAACGTGTCGCACTACTCAGGGTTGGCGCGGCTGGTCGGG
GCCGCTGGCATCGCGCGACTGCAGGAGGGATTTGGCGCAAGGCTGTACTA
CAACACGTCGGTGCCCGTGTCGACGGGCTCGCATCGTGGGCGCCTGATGA
AGTACGGCGTCATCTCCCTGCGGGACCTCTCCAGCGACTTGCTCGAGTGG
CGGTGGCTCTACGCTTCGGGCCGGTTGCACAAGCCTGTTAG
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