mRNA_P-wetherbeei_contig13354.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13354.1.1
Unique NamemRNA_P-wetherbeei_contig13354.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13354.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13354contigP-wetherbeei_contig13354:584..1052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size271
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.4074512-CDS-P-wetherbeei_contig13354:583..6221683185982.4074512-CDS-P-wetherbeei_contig13354:583..622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13354 584..622 -
1683185982.4198205-CDS-P-wetherbeei_contig13354:647..7621683185982.4198205-CDS-P-wetherbeei_contig13354:647..762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13354 648..762 -
1683185982.4313264-CDS-P-wetherbeei_contig13354:936..10371683185982.4313264-CDS-P-wetherbeei_contig13354:936..1037Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13354 937..1037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.4466655-UTR-P-wetherbeei_contig13354:1037..10521683185982.4466655-UTR-P-wetherbeei_contig13354:1037..1052Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13354 1038..1052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13354.1.1prot_P-wetherbeei_contig13354.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13354 584..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13354.1.1

>prot_P-wetherbeei_contig13354.1.1 ID=prot_P-wetherbeei_contig13354.1.1|Name=mRNA_P-wetherbeei_contig13354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MAEQLGNGNPGEEARVTVKREAIVHPARDGGASSGDVARPKFKPRAPQRR
PAPHTGGSASGEAPAAAAAAAAAGGGRLERTACGA
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mRNA from alignment at P-wetherbeei_contig13354:584..1052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13354.1.1 ID=mRNA_P-wetherbeei_contig13354.1.1|Name=mRNA_P-wetherbeei_contig13354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=469bp|location=Sequence derived from alignment at P-wetherbeei_contig13354:584..1052- (Phaeothamnion wetherbeei SAG_119_79)
GCCAAAAACCTCGCGATGGCGGAACAGCTGGGCAACGGGAACCCCGGGGA
AGAAGCCCGGGTGACAGTGAAGCGAGAAGCTATCGTACATCCCGCAAGAG
ATGGAGGAGCAAGCAGGCAAGTCCTTTGGCCTTCACTCGATCCTTCAAAA
GGACTGGACCAAGTTTTGGAAAGCATATTCGCATCGCCGTCTTGCTCGAG
GACTGGTAATTTTGATAAGCTCAATGTCTTCTCTTGATCTTCTTGCCTTA
CAAGCTCACTTCCCCCCCGTTCCGCTTTTCACTTCGCCAGTGGGGATGTG
GCTCGCCCCAAATTCAAGCCCCGAGCGCCTCAGCGGCGACCGGCGCCGCA
CACTGGCGGCTCTGCATCGGGAGAGGCGCCTGCCGCCGCCGCCGCTGCCG
CCGCCGCCGCCGCCGCCGCTGCTGGGCGAGGCGGGCGGGGGCCGTTTGGA
GCGCACAGCGTGCGGGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13354:584..1052-

>mRNA_P-wetherbeei_contig13354.1.1 ID=mRNA_P-wetherbeei_contig13354.1.1|Name=mRNA_P-wetherbeei_contig13354.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig13354:584..1052- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAACAGCTGGGCAACGGGAACCCCGGGGAAGAAGCCCGGGTGAC
AGTGAAGCGAGAAGCTATCGTACATCCCGCAAGAGATGGAGGAGCAAGCA
GTGGGGATGTGGCTCGCCCCAAATTCAAGCCCCGAGCGCCTCAGCGGCGA
CCGGCGCCGCACACTGGCGGCTCTGCATCGGGAGAGGCGCCTGCCGCCGC
CGCCGCTGCCGCCGCCGCGGGCGGGGGCCGTTTGGAGCGCACAGCGTGCG
GGGCC
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