mRNA_P-wetherbeei_contig13339.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13339.1.1
Unique NamemRNA_P-wetherbeei_contig13339.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A836CDH6_9STRA (Lung seven transmembrane receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDH6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.260e-23
Identity = 61/170 (35.88%), Postives = 88/170 (51.76%), Query Frame = 1
Query:   10 AKGFQYSLVEDFSESRFSFSERYMFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLCRSIHSFALGDASRT---------IGGAGTFRGKVLDHYEVKEAGLQYAMFQLCP---APQEPDVKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            A GF+Y LV+  + +  SFSE++M+ +++GP   + G SYI +D++++     +   Y   VL Y+    E + PPVDLC+          S T              T  G+V   Y V+E GL YA+ Q+CP   +    D    G++TF N YGYLPG  YGYLP Q
Sbjct:   21 ADGFRYHLVDKLNGTLVSFSEQFMYGTDQGPLGFKHGLSYIAMDMNMTAAAPAAKGNYITNVLFYKNAEYEIDLPPVDLCQQPKPVYPEGFSHTQLDHFPMERSDAGNTVTGQVAAKYRVEEGGLTYAVMQVCPPRWSAVAVDATFKGDITFHNTYGYLPGSDYGYLPLQ 190          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: F0YHP6_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHP6_AURAN)

HSP 1 Score: 95.9 bits (237), Expect = 3.630e-20
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    1 LASAKGFQYSLVEDFSESRFSFSERYMFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLC-RSIHSFALGDASRTIGGAGTFRGKVLDHYEVKEAGLQYAMFQLCPAPQEPDVKVSGELTFKNPYGYLPGMYYGYLPFQV 486
            L +   +++ + + + + + SFSE Y + +++GP     G SY+ +DL+  +    SS   N+TVL + T   E E   V+LC R + +     A R+         K+  +YEV  +GLQY   Q+C +     +++ G +TFKNPYG+LP MY+G+LPF++
Sbjct:   11 LGAVASYKWDISDTYGQEKLSFSELYQYGTDDGPFPVTRGASYVLVDLEGQLSNPYSSA--NVTVLAF-TSPGELELGGVNLCARELPAGVETSARRSFAVDAVSSRKIRLYYEVPTSGLQYVALQVCDSWAPVLLRLEGTITFKNPYGFLPAMYFGFLPFEL 170          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: W7TKC6_9STRA (Gpr7 transmembrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKC6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.780e-19
Identity = 60/183 (32.79%), Postives = 100/183 (54.64%), Query Frame = 1
Query:   19 FQYSLVEDFSES-RFSFSERYMFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRT-------GAIEFEQ------PPVDLC----------RSIHSFALG--DASRTIGGAGT-FRGKVLDHYEVKEAGLQYAMFQLCPA-PQEPDVKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            F+Y + E ++E+ ++S++E YM+ S +GP     G++ +H++L + + T    D  N++VL Y         GA           P  DLC          R++H+      +A+   G A T +  +V   Y+V E+G+Q  +FQ+CP      +V ++GEL+F+NPYG+LPG +YGYLPF+
Sbjct:   22 FKYQIDERYAETAKWSYTETYMYGSGQGPLAWNNGDASVHLNLSLRLSTLTEEDYVNVSVLFYHQKEAGKEGGAXXXXXXXVDYVPDSDLCALEFPPGASDRAMHTVMAHKVEAAPGEGPASTEWAARVEADYKVLESGVQNVLFQICPPLVSVSEVGLAGELSFRNPYGFLPGRFYGYLPFE 204          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A4D9CUW6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUW6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.210e-19
Identity = 61/185 (32.97%), Postives = 102/185 (55.14%), Query Frame = 1
Query:   19 FQYSLVEDFSES-RFSFSERYMFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYR---TG----------------------AIEFEQPPVDLCRSIHSFALG--DASRTIGGAGT-FRGKVLDHYEVKEAGLQYAMFQLCPA-PQEPDVKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            F+Y + E ++E+ ++S++E YM+ S +GP     G++ +H++L + + T    D  N++VL Y    TG                      A+EF  PP    R++H+      +A+   G A T +  +V   Y+V E+G+Q  +FQ+CP      +V ++GEL+F+NPYG+LPG +YGYLPF+
Sbjct:   22 FKYQIDERYAETAKWSYTETYMYGSGQGPLAWNNGDASVHLNLSLRLSTLTEEDYVNVSVLFYHQKETGKEGGAXXXXXXGVDYVPDSDLCALEF--PPGASDRAMHTVMAHKVEAAPGEGPASTEWAARVEADYKVVESGVQNVLFQICPPLVSVSEVGLAGELSFRNPYGFLPGRFYGYLPFE 204          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A8J2SY59_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY59_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.970e-18
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 1
Query:    1 LASAKGFQYSLVEDFSESRFSFSERYMFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLCR-SIHSFALGDASRTIGGAGTFRGKVLDHYEVKEAGLQYAMFQLCPAPQEPDVKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            LA     +Y     +  ++  F+E YM+AS+EGP    GGESY+  DL   +   +     N+TV+ + T         +DLC  +I++ +  +  +T    G     +   Y V  AGLQY   Q+C       ++++G   FKNPYG++PG Y+G+LPF+
Sbjct:   11 LALTTACRYEEATTYRANKMFFTEYYMYASDEGPFPFTGGESYVLADLRAKLS--MKGTRANVTVMAFSTDEELDSIDSIDLCLGNINTVSPREKRKTFAVTGDHPSHLYLKYSVHTAGLQYLALQVCDGGWLSGMELNGVFEFKNPYGFVPGRYFGFLPFE 170          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A7S2V230_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V230_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.120e-10
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  226 EQPPVDLCRSIHSFALGDASRTIGGAG-TFRGKVLDHYEVKEAGLQYAMFQLCPAP-QEPDVKVSGELTFKNPYGYLPGMYYGYLPFQV 486
            E P V + +   +   G   + +GG   T+   +   Y+V E GLQY +  +CP P   P   + G ++F+NPYGYLPG+YYG+LP+ V
Sbjct:   73 EAPEVVVQQQPVAAGSGAEDQGLGGPMVTYHASIKAKYKVVETGLQYMVLGVCPLPFPAPVAAMQGTVSFRNPYGYLPGVYYGFLPYSV 161          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A6G0XSC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSC5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.680e-9
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   79 MFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLCRSIHSFALGDASRTIGGAGTF-----RGKVLDH---------YEVKEAGLQYAMFQLCPAP---QEPDVKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            MFA+++GP L + GES+I +++D   +T  + D + + V  Y    + F     ++ +S++ FA  + S  I  A ++     R + L H         YEVK +G    +  +C       E  +  SG+LT +NPYG LP ++YG LPF 
Sbjct:   53 MFATDQGPFLGKYGESHIELEIDGEHVTP-NMDGWRLVVFHYHADDLSFL---TNMEQSLYMFAC-NPSNQIFAADSYNSYFERSEFLVHNRLLRVRTSYEVKASGWIDTVIVVCSKSGDRSENSLNFSGKLTIRNPYGLLPAVFYGLLPFS 199          
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Match: A0A1V9Z7L4_9STRA (Gpr7 transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7L4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.030e-5
Identity = 41/148 (27.70%), Postives = 67/148 (45.27%), Query Frame = 1
Query:   79 MFASNEGPSLDRGGESYIHIDLDVSVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLCRSIHSFA--LGDASRTIGGAGTFRGK----------VLDHYEVKEAGLQYAMFQLCPAPQEPD-VKVSGELTFKNPYGYLPGMYYGYLPFQ 483
            MF +N+GP L   G S++ + L  + +T  + D + + V  Y+   +   Q   D   ++  FA  + D    + G   F             V   Y V  +G   ++  +CP     D ++ +G LT +NPYG LP ++YG LPF 
Sbjct:    1 MFGTNQGPILGEQGSSFVELALHGANVT-TAMDGWRVVVFHYQANDL---QTLADAEGNLALFACSMEDTDFEMDGVSHFSRHDYTIANESLAVATKYAVNSSGWVDSVVFVCPKGGRQDALQFTGSLTVRNPYGLLPAVFYGLLPFS 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13339.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A836CDH6_9STRA1.260e-2335.88Lung seven transmembrane receptor-domain-containin... [more]
F0YHP6_AURAN3.630e-2033.13Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
W7TKC6_9STRA1.780e-1932.79Gpr7 transmembrane protein n=1 Tax=Nannochloropsis... [more]
A0A4D9CUW6_9STRA4.210e-1932.97Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8J2SY59_9STRA7.970e-1832.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2V230_9STRA4.120e-1038.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0XSC5_9STRA2.680e-930.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9Z7L4_9STRA1.030e-527.70Gpr7 transmembrane protein n=1 Tax=Achlya hypogyna... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13339contigP-wetherbeei_contig13339:124..1376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FGZ0
PFAMsLung_7-TM_R
Model size486
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0031090,GO:0031984,GO:0031985,GO:0032580,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0098588,GO:0098791
Exons3
Evalue4.2e-21
EggNOG OGsKOG2568@1|root,KOG2568@2759|Eukaryota
Descriptionretrograde transport, endosome to Golgi
Cds size486
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.8717604-CDS-P-wetherbeei_contig13339:123..3541683185981.8717604-CDS-P-wetherbeei_contig13339:123..354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13339 124..354 -
1683185981.8837316-CDS-P-wetherbeei_contig13339:621..7181683185981.8837316-CDS-P-wetherbeei_contig13339:621..718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13339 622..718 -
1683185981.893847-CDS-P-wetherbeei_contig13339:1218..13761683185981.893847-CDS-P-wetherbeei_contig13339:1218..1376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13339 1219..1376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13339.1.1prot_P-wetherbeei_contig13339.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13339 124..1376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13339.1.1

>prot_P-wetherbeei_contig13339.1.1 ID=prot_P-wetherbeei_contig13339.1.1|Name=mRNA_P-wetherbeei_contig13339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
LASAKGFQYSLVEDFSESRFSFSERYMFASNEGPSLDRGGESYIHIDLDV
SVMTHVSSDAYNMTVLCYRTGAIEFEQPPVDLCRSIHSFALGDASRTIGG
AGTFRGKVLDHYEVKEAGLQYAMFQLCPAPQEPDVKVSGELTFKNPYGYL
PGMYYGYLPFQV
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mRNA from alignment at P-wetherbeei_contig13339:124..1376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13339.1.1 ID=mRNA_P-wetherbeei_contig13339.1.1|Name=mRNA_P-wetherbeei_contig13339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1253bp|location=Sequence derived from alignment at P-wetherbeei_contig13339:124..1376- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTTCAGCGAAAGGCTTCCAGTACAGTCTAGTGGAAGACTTCAGCGA AAGCCGATTCTCCTTTTCGGAGCGCTATATGTTTGCGTCCAACGAGGGCC CCTCCCTCGACCGTGGAGGAGAGTCGTACATCCACATCGATCTGGATGTC TCCGTCATGTGAGTTTCCTTCATTCATCTATTTGCAACGCTGCAAGAATC CGACGTTTGATGGAAATCCAATGCTATTTCGATATTTCCATTGAATATCC GGTGCTGCTCATGTACTAGCAATCCACCGATGTTCCCTGCGTAAGTGGTT TTTGTGTGACGATTCGCCCCAAAATCGTGGCAAAACCCCGAAGAAGTGGC GGCAATCTCACTCACACGTTCGGGTTATCTGCCCAGCGAAGATGCGTATG AAGTCAGCCGGCTCCACGTTTCACCCCCGTTTGTGCAACCAACTGCACGT TCAAATGCCGTGTAGCAGCTCGTTTGGCGGCGCCCTCATATTCTGCTCAA CAATAACACGACATGGGTCATCCGGCTTTCCGATGCCCTTTTTTCCTTAT TCTCTGGCCTGCCTGCACCCTTTGGCTGCCGTGTGGCTTTGTGTACCTTC TCCGGGGGGTCGGCACCGCCTGCCGGCGACGTTTCCCGATTTCCCGACTG GCTTATAGGACGCATGTCTCGTCCGACGCCTACAACATGACGGTGCTGTG CTACCGCACCGGCGCCATCGAATTCGAGCAGCCGCCCGTCGATCTCTGCC GCTCGGTGAGGAGTTGTGAGACGGTCAGCTGGTTAGTTGCACTCTTACAG CCTTTGATTTAGTCGGCACTCTCGCTCCTTGTTCTGTCGTAAGGGACAAA GTGTCTTTGACGAGATCGCTCATAGGACGGGGTCCTTGTCTGTAGTATGT CTGCGTGGGCCGGTCCTGACGCCTCCACCTGCTTCGCTGCTCCTGCCTTC CTTGCTTCTCGTTTCTGTTGGATCTACACGCAGACGGTGTCGACGCTGCC GGCGCATTTTGAGTGGCCGCAGATCCACTCATTCGCCCTCGGCGACGCCT CCCGCACCATCGGCGGCGCCGGAACCTTCCGCGGAAAGGTCCTGGACCAC TATGAAGTGAAAGAAGCCGGGTTGCAGTACGCCATGTTCCAGCTGTGCCC GGCGCCGCAGGAACCCGATGTGAAAGTGTCGGGGGAGCTAACCTTCAAGA ACCCCTACGGCTACCTGCCCGGAATGTACTACGGCTACCTGCCCTTCCAG GTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13339:124..1376-

>mRNA_P-wetherbeei_contig13339.1.1 ID=mRNA_P-wetherbeei_contig13339.1.1|Name=mRNA_P-wetherbeei_contig13339.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig13339:124..1376- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTTCAGCGAAAGGCTTCCAGTACAGTCTAGTGGAAGACTTCAGCGA
AAGCCGATTCTCCTTTTCGGAGCGCTATATGTTTGCGTCCAACGAGGGCC
CCTCCCTCGACCGTGGAGGAGAGTCGTACATCCACATCGATCTGGATGTC
TCCGTCATGACGCATGTCTCGTCCGACGCCTACAACATGACGGTGCTGTG
CTACCGCACCGGCGCCATCGAATTCGAGCAGCCGCCCGTCGATCTCTGCC
GCTCGATCCACTCATTCGCCCTCGGCGACGCCTCCCGCACCATCGGCGGC
GCCGGAACCTTCCGCGGAAAGGTCCTGGACCACTATGAAGTGAAAGAAGC
CGGGTTGCAGTACGCCATGTTCCAGCTGTGCCCGGCGCCGCAGGAACCCG
ATGTGAAAGTGTCGGGGGAGCTAACCTTCAAGAACCCCTACGGCTACCTG
CCCGGAATGTACTACGGCTACCTGCCCTTCCAGGTG
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