mRNA_P-wetherbeei_contig13322.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13322.1.1
Unique NamemRNA_P-wetherbeei_contig13322.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A835YNU8_9STRA (Mechanosensitive ion channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.100e-26
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   31 MFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVRQSVTAC---FVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRSG 342
            +FV LWI+    L LGVT V++ VAFSF+FG S      +C   FVTRAYDVGDR++  D+ N E NY V RINMLTT+F+R+DD     PN++LA +EI+N RRSG
Sbjct:  919 LFVFLWIFDQNILGLGVTWVSLVVAFSFLFGSSAANFFESCVFIFVTRAYDVGDRVYIKDELNDEANYVVQRINMLTTVFRRWDDHYTILPNQQLAKREIRNMRRSG 1025          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A835YTT2_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.860e-19
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    4 IACGLAVLLMFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVR---QSVTACFVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRSG 342
            ++ G AV L+FV LWI+    + LGV+ V++ +A SFVF  S +   +S    FVTR +DVGD + F DD   +  + V RIN+L+T+ KR+D   V +PN+ LA +EI+N RRSG
Sbjct:  436 LSVGFAVFLLFVCLWIFGQGVVGLGVSWVSLLLAGSFVFSTSAQGLCESFVFIFVTRPFDVGDGVHFRDDMGQDNVFVVHRINLLSTVLKRWDGQYVVWPNRFLALREIRNMRRSG 551          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A6H5JSR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.360e-17
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   19 AVLLMFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVR---QSVTACFVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            AV++ FV L I       L +T +++AVAFSF+FG S     +S+   FVT+AYDVGD ++FVDD+  E  Y V+RINMLTT+F+R+D       N  +A K I+NQ RS
Sbjct:  786 AVVVFFVALRILGYDIGSLVLTWLSLAVAFSFLFGSSASAFFESIVFVFVTKAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRS 895          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: D7FX37_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX37_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.170e-13
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 VIACGLAVLLMFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVRQSVTAC---FVTRAYDVGDRIFFVDDSNVE----QNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            +I C +  +L FV L IW    + L VT  +  +AFSF+ G +    ++A    FV+R YDVGDR+     SN +     N TV +++++TT+FKR+D+     PN  LA K I N +R+
Sbjct:  903 IIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTQGEEPTNVTVVKVDLMTTVFKRWDEQVFYMPNHLLATKTIVNIQRT 1022          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A2H9TJT1_9FUNG (EF-hand domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TJT1_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-11
Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   28 LMFVVLWIWSTQPL-QLGVTLVTVAVAFSFVFGQSVRQ---SVTACFVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRSG 342
            L+F V+    T+ L  LGV++    VA + +FG+S++    ++   F T  YDVGDR++    S     Y V +I +L+TIF+R+D   VCYPN  L+ K I N RR+G
Sbjct:  405 LIFPVVGFSPTEALVPLGVSITPTIVACTLIFGESIKSIFAAIVFLFATHPYDVGDRVYMDQGS-----YFVRKIELLSTIFERWDGFTVCYPNSVLSTKSICNVRRTG 508          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A0D2U9P5_CAPO3 (EF-hand domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9P5_CAPO3)

HSP 1 Score: 66.6 bits (161), Expect = 1.890e-10
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   22 VLLMFVVLWIW----STQPLQLGVTLVTVAVAFSFVFGQSVRQ---SVTACFVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            VLL F++L++W            +TL T  +AF+FVFG SV++   SV   FV   +DV DR+FF ++     N  V+ I+++ T+F R+D M + YPN  L    I+N RRS
Sbjct:  782 VLLCFILLFVWLAILGVDVTNFFLTLSTFLLAFTFVFGNSVKELYESVVFLFVNHPFDVQDRVFFNNE-----NCFVTEIHLMNTVFTRWDGMVISYPNAVLNKLPIQNARRS 889          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A6H5JDS1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.590e-10
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 VIACGLAVLLMFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVRQSVTAC---FVTRAYDVGDRIFFVDDSNVE----QNYTVSRINMLTTIFKRFDD 276
            +I C +  +L FV L IW    + L VT  +  +AFSF+ G +    ++A    FV+R YDVGDR+     SN       N TV +++++TT+FKR+D+
Sbjct:  951 IIMCVILFILFFVWLSIWGADVVSLSVTFASFLIAFSFMIGTAASNLMSAVLFIFVSRLYDVGDRVHIYSGSNTRGEEPTNVTVVKVDLMTTVFKRWDE 1049          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: D8LMN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN4_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 8.530e-10
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  163 RAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            RAYDVGD ++FVDD+  E  Y V+RINMLTT+F+R+D       N  +A K I+NQ RS
Sbjct:   11 RAYDVGDPVYFVDDTGGEDWYIVTRINMLTTVFRRWDGQATLIANNIMAKKAIRNQWRS 69          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A835ZCG5_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.460e-9
Identity = 34/93 (36.56%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   70 QLGVTLVTVAVAFSFVFGQSVR---QSVTACFVTRAYDVGDRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            Q G T +T+A+AFSF FG +V+   + +   FV   Y + DR+F  DD+ VE N  V++IN+L T F R D       N  +  ++++N  R+
Sbjct:   60 QAGTTWLTLALAFSFCFGDTVKRLFEGLVLVFVWNPYGISDRVFINDDNKVEMNLVVTKINLLNTEFIRSDGQLCIISNSIIQQRDVRNASRA 152          
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Match: A0A6H5JBC1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.120e-9
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:   25 LLMFVVLWIWST----QPLQLGVTLVTVAVAFSFVFGQSVRQSVTAC---FVTRAYDVGDRIFFVDD---SNVE-QNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQRRS 339
            L++F++ ++W +      L L VT  +  +AFSF+ G +    +TA    FV+R YDVGDR+   DD   + VE  N  V+++++ TT F+R+D+     PN  LA K I N +R+
Sbjct:  940 LILFILAFVWLSILGFDVLSLSVTFASFLIAFSFMIGTAASNLMTAVLFIFVSRLYDVGDRVHIYDDVQTAGVEPMNVVVTKVDLRTTSFRRWDEQIFYIPNHLLAEKTIVNIQRT 1055          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13322.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNU8_9STRA3.100e-2655.14Mechanosensitive ion channel-domain-containing pro... [more]
A0A835YTT2_9STRA7.860e-1944.83EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JSR3_9PHAE3.360e-1747.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX37_ECTSI5.170e-1337.50Small Conductance Mechanosensitive Ion channel n=1... [more]
A0A2H9TJT1_9FUNG2.810e-1139.45EF-hand domain-containing protein n=1 Tax=Paramicr... [more]
A0A0D2U9P5_CAPO31.890e-1038.94EF-hand domain-containing protein n=1 Tax=Capsaspo... [more]
A0A6H5JDS1_9PHAE2.590e-1037.37EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LMN4_ECTSI8.530e-1054.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCG5_9STRA1.460e-936.56Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
A0A6H5JBC1_9PHAE3.120e-936.21EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13322contigP-wetherbeei_contig13322:307..1208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FX37
PFAMsMS_channel
Model size342
Max annot lvl2759|Eukaryota
KEGG koko:K02575,ko:K22048
KEGG TC1.A.23.4,2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categorychloroplast
Exons2
Evalue4.58e-12
EggNOG OGsCOG0668@1|root,KOG4629@2759|Eukaryota
Descriptionmechanosensitive ion channel activity
Cds size312
COG categoryM
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.2720578-UTR-P-wetherbeei_contig13322:306..3361683185981.2720578-UTR-P-wetherbeei_contig13322:306..336Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13322 307..336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185981.280828-CDS-P-wetherbeei_contig13322:336..4581683185981.280828-CDS-P-wetherbeei_contig13322:336..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13322 337..458 +
1683185981.2882419-CDS-P-wetherbeei_contig13322:1018..12081683185981.2882419-CDS-P-wetherbeei_contig13322:1018..1208Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13322 1019..1208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13322.1.1prot_P-wetherbeei_contig13322.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13322 337..1208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13322.1.1

>prot_P-wetherbeei_contig13322.1.1 ID=prot_P-wetherbeei_contig13322.1.1|Name=mRNA_P-wetherbeei_contig13322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MFVVLWIWSTQPLQLGVTLVTVAVAFSFVFGQSVRQSVTACFVTRAYDVG
DRIFFVDDSNVEQNYTVSRINMLTTIFKRFDDMNVCYPNKKLAGKEIKNQ
RRSG
back to top

mRNA from alignment at P-wetherbeei_contig13322:307..1208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13322.1.1 ID=mRNA_P-wetherbeei_contig13322.1.1|Name=mRNA_P-wetherbeei_contig13322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=902bp|location=Sequence derived from alignment at P-wetherbeei_contig13322:307..1208+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATTGCGTGCGGGCTGGCGGTGCTGCTGATGTTTGTGGTGCTGTGGAT CTGGTCCACCCAGCCGCTGCAGCTCGGAGTTACCCTCGTCACCGTCGCCG TCGCATTCAGCTTTGTCTTCGGTCAGTCGGTTCGCCAGTCGGTCACTGCT TGGTTTTCCGTTTGTCTCCTTAATCTGTATGGTTCGTTGGGTTGCTCGCT TTTGGCCTCCCCTTGCCTTCTCGCACTTTTAAGACGGGTCCGCTGCGCAA CGGTAGATGTAAACGATAGGAGAAATCACGAAAACGGAGAAATCGGGCAC CCTTTTTGGTAGGAGCATGGGCGACCGTGATTGATCTGCTCTGATGCCCG CATTTCCGCTCTCGTTGACCTCTCGCTTGCGCCGTCCCGCAACCGCAACC CGCCGCTCCTCTGGCGGTCTACAGGGAGCACGGCAAGCGAGTTCTGCGAC AGCTGCGTCTTCGTGTGCGTTCTTTTTGCCGCCCGCCAGCCGGCTGGCTG GCCAGATGCGTTGTCATTGTTTTTGCCCTTCTTTTGGTGGGGTGTGGACA GCTTCTTTCCTTCTGACTTTTGATTAACTGTGCGTCATGGTGGGACCCGT TAGGATCTCTCATGCGTGGTCCCGTTGCTCCCTGTGTTACCTGTTCCCAC CCTCAACCGTTTTCTCCTCATTCCTCCCTTCGCTGCTCGGCTCTGATGAA CGAAACCCACAGCTTTGTGACGCGGGCGTACGACGTTGGGGACCGCATCT TTTTCGTGGATGACTCCAACGTGGAGCAAAACTACACGGTGTCACGCATC AATATGCTGACGACCATCTTCAAGCGCTTCGATGACATGAACGTGTGCTA CCCCAACAAGAAGCTCGCCGGCAAGGAGATCAAGAACCAGCGAAGATCCG GT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13322:307..1208+

>mRNA_P-wetherbeei_contig13322.1.1 ID=mRNA_P-wetherbeei_contig13322.1.1|Name=mRNA_P-wetherbeei_contig13322.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig13322:307..1208+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGTGGTGCTGTGGATCTGGTCCACCCAGCCGCTGCAGCTCGGAGT
TACCCTCGTCACCGTCGCCGTCGCATTCAGCTTTGTCTTCGGTCAGTCGG
TTCGCCAGTCGGTCACTGCTTGCTTTGTGACGCGGGCGTACGACGTTGGG
GACCGCATCTTTTTCGTGGATGACTCCAACGTGGAGCAAAACTACACGGT
GTCACGCATCAATATGCTGACGACCATCTTCAAGCGCTTCGATGACATGA
ACGTGTGCTACCCCAACAAGAAGCTCGCCGGCAAGGAGATCAAGAACCAG
CGAAGATCCGGT
back to top