mRNA_P-wetherbeei_contig1330.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1330.1.1
Unique NamemRNA_P-wetherbeei_contig1330.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A6H5KSL6_9PHAE (V-SNARE domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.430e-13
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   55 LEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLYVRIR 306
            L+DSRRV+ ETE +G GV+ DLESQR SLLRS  +V+ T     +AR  L SI R  LR R+ LYA+I +L   I  +LY++IR
Sbjct:  156 LQDSRRVLEETEGIGRGVMGDLESQRESLLRSRASVRDTGAAAGQARRLLGSISRRELRHRLCLYAVIALLSAAIVFVLYLKIR 239          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: H3HAR8_PHYRM (V-SNARE domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3HAR8_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 1.110e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            RL  + D L ++   LED+ R+V ETE VG+ VLD L  QR SLL +HE V+ T  +   AR  LQ + R ++   +VLY  I VL+  I  +LY
Sbjct:  116 RLIKSNDRLTKSSKKLEDTHRIVAETEEVGITVLDTLAQQRESLLGAHEKVRETGAMATEARRILQRMTRRIITNTIVLYTTIFVLIAAICYVLY 210          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: W2JIH7_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2JIH7_PHYPR)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            RL    D L ++   LED+ R+V ETE VG+ VLD L SQR SLL +HE V+ T  +   AR  LQ + R ++   +VLY  I VL+  I  ++Y
Sbjct:   88 RLIKNNDRLTKSSKKLEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVIY 182          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A484E001_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E001_BRELC)

HSP 1 Score: 68.2 bits (165), Expect = 1.680e-11
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 HCRRLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVL 267
            H  RL  + D L ++   LED+ R+V ETE VG+ VLD L SQR  LL SH+ V+ T  ++  AR  LQ + R +L   +VLY  I +L
Sbjct:  146 HYERLTKSTDRLTQSSMKLEDTHRIVAETEEVGIAVLDTLASQRERLLESHDKVRETGAMLTEARRLLQRMTRRILTNTIVLYTTIFIL 234          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A833T0H8_PHYIN (V-SNARE family protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A833T0H8_PHYIN)

HSP 1 Score: 67.4 bits (163), Expect = 2.190e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            RL    D L ++   LED+ R+V ETE VG+ VLD L SQR SLL +HE V+ T  +   AR  LQ + R ++   +VLY  I VL+  I  ++Y
Sbjct:  117 RLIKNNDRLAKSSKKLEDTHRIVAETEEVGITVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVIY 211          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A8K1CNI7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNI7_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 3.500e-11
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            R+ A  + L ++   LE S+R++ ETE +G+ VLD+L SQR SLL +HE V+ T      AR  LQ + R ++  ++VLY++I +L+  I +++Y
Sbjct:  123 RIMANTNRLNKSTKSLEGSQRLIAETEQIGISVLDNLSSQRESLLSAHEKVRETREATSEARRILQRMARRIITNKIVLYSVIALLVISICVVIY 217          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A2D4C130_PYTIN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C130_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 5.430e-11
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            R+ A  + L R+   L  S+R++ ETE +G+ VLD+L SQR SLL +HE V+ T  V   AR  LQ + R  +   +VLY II VL+  I +++Y
Sbjct:  105 RILANTNRLERSSKALASSQRMIAETEQIGISVLDNLSSQRESLLSAHEKVRETREVTGEARRILQRMMRRAITNTIVLYTIIAVLVVSICVVIY 199          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: F0WUQ0_9STRA (Uncharacterized protein AlNc14C277G10057 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUQ0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 37/95 (38.95%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   10 RLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            R+ ++   L R+   L+ SRR+V ETE +GV VLD L  QR SLL +H+ V+ T  V    R  L+ + R +L+  V+L+++IV+L+  I +++Y
Sbjct:  125 RVQSSTHRLQRSSTQLDQSRRLVAETEQIGVSVLDSLSQQRESLLSAHQKVRETQDVTRDTRKLLKLMTRRILKNHVILWSVIVLLVIAICVVIY 219          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A0W8DN76_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DN76_PHYNI)

HSP 1 Score: 63.5 bits (153), Expect = 1.520e-10
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   55 LEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            LED+ R+V ETE VG+ VLD L SQR SLL +HE V+ T  +   AR  LQ + R ++   +VLY  I VL+  I  ++Y
Sbjct:   49 LEDTHRIVAETEEVGIAVLDTLASQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTTIFVLIVAICYVIY 128          
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Match: A0A662Y3N4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3N4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.040e-10
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   40 RTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRSHENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLY 294
            R+   LEDS R+V ETE VG+ VLD L  QR SLL +HE V+ T  +   AR  LQ + R ++   +VLY +I VL+  I  ++Y
Sbjct:  145 RSSKTLEDSHRLVTETEEVGISVLDSLAQQRESLLGAHEKVRETGAMTTEARRILQRMTRRIITNTIVLYTVIFVLIVAICYVIY 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1330.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL6_9PHAE5.430e-1352.38V-SNARE domain-containing protein n=2 Tax=Ectocarp... [more]
H3HAR8_PHYRM1.110e-1143.16V-SNARE domain-containing protein n=23 Tax=Phytoph... [more]
W2JIH7_PHYPR1.400e-1143.16Uncharacterized protein n=6 Tax=Phytophthora paras... [more]
A0A484E001_BRELC1.680e-1143.82Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A833T0H8_PHYIN2.190e-1143.16V-SNARE family protein n=3 Tax=Phytophthora TaxID=... [more]
A0A8K1CNI7_PYTOL3.500e-1138.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C130_PYTIN5.430e-1142.11t-SNARE coiled-coil homology domain-containing pro... [more]
F0WUQ0_9STRA1.320e-1038.95Uncharacterized protein AlNc14C277G10057 n=1 Tax=A... [more]
A0A0W8DN76_PHYNI1.520e-1046.25Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A662Y3N4_9STRA3.040e-1044.71Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1330contigP-wetherbeei_contig1330:27..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LHK7
Preferred nameVTI1A
PFAMsV-SNARE,V-SNARE_C
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K08493,ko:K08494,ko:K10406,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
Exons1
Evalue7.83e-16
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-10_002250.1
Descriptionvesicle fusion with Golgi apparatus
Cds size321
COG categoryS
BRITEko00000,ko00001,ko03019,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.690083-CDS-P-wetherbeei_contig1330:26..3471683185980.690083-CDS-P-wetherbeei_contig1330:26..347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1330 27..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1330.1.1prot_P-wetherbeei_contig1330.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1330 27..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1330.1.1

>prot_P-wetherbeei_contig1330.1.1 ID=prot_P-wetherbeei_contig1330.1.1|Name=mRNA_P-wetherbeei_contig1330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
HCRRLAAAEDSLGRTGALLEDSRRVVGETEAVGVGVLDDLESQRRSLLRS
HENVKRTMGVVERARVGLQSIERSVLRRRVVLYAIIVVLLGLIGLLLYVR
IRMHRH*
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mRNA from alignment at P-wetherbeei_contig1330:27..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1330.1.1 ID=mRNA_P-wetherbeei_contig1330.1.1|Name=mRNA_P-wetherbeei_contig1330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:27..347+ (Phaeothamnion wetherbeei SAG_119_79)
CACTGTCGGCGCCTGGCGGCGGCCGAGGATTCGCTCGGCCGCACCGGCGC GCTGCTGGAGGACTCGCGGCGGGTGGTCGGTGAGACGGAGGCCGTCGGCG TCGGTGTGTTGGACGACCTCGAGTCGCAGCGGCGGTCGCTGCTGCGGTCG CACGAGAACGTCAAGCGGACCATGGGCGTGGTGGAGCGGGCGCGCGTTGG CCTGCAGTCGATCGAGCGGAGCGTCCTCCGGCGGCGGGTCGTGCTGTACG CGATCATCGTGGTGCTGCTGGGGCTCATCGGGCTTCTGCTCTACGTCAGA ATACGGATGCACCGCCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1330:27..347+

>mRNA_P-wetherbeei_contig1330.1.1 ID=mRNA_P-wetherbeei_contig1330.1.1|Name=mRNA_P-wetherbeei_contig1330.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:27..347+ (Phaeothamnion wetherbeei SAG_119_79)
CACTGTCGGCGCCTGGCGGCGGCCGAGGATTCGCTCGGCCGCACCGGCGC
GCTGCTGGAGGACTCGCGGCGGGTGGTCGGTGAGACGGAGGCCGTCGGCG
TCGGTGTGTTGGACGACCTCGAGTCGCAGCGGCGGTCGCTGCTGCGGTCG
CACGAGAACGTCAAGCGGACCATGGGCGTGGTGGAGCGGGCGCGCGTTGG
CCTGCAGTCGATCGAGCGGAGCGTCCTCCGGCGGCGGGTCGTGCTGTACG
CGATCATCGTGGTGCTGCTGGGGCTCATCGGGCTTCTGCTCTACGTCAGA
ATACGGATGCACCGCCACTGA
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