mRNA_P-wetherbeei_contig13298.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13298.1.1
Unique NamemRNA_P-wetherbeei_contig13298.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A127EQ99_9HYPH (Carboxymuconolactone decarboxylase n=2 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EQ99_9HYPH)

HSP 1 Score: 163 bits (412), Expect = 1.580e-49
Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    1 QKFRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKEAGG 363
            QKF D+YVE+FG LPPLP+ RF FS E+NPEFLR +E+LR  AFY+K  D+KTTQLILFGMLL EHN + AQAHA+AARRAGA++EELHTV+ELA ATGAL   N G ++L  ++DKE GG
Sbjct:   14 QKFSDSYVEMFGHLPPLPSGRFAFSGEMNPEFLRDAERLRGKAFYNKTFDMKTTQLILFGMLLVEHNQIAAQAHASAARRAGATWEELHTVVELATATGALGPFNQGSALLNGMRDKEQGG 134          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A6L5FH23_9HYPH (Carboxymuconolactone decarboxylase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FH23_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 6.390e-39
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   16 TYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKEAGG 363
            TYVE+FG  P LP  RFEFSS VNPEFLR+SE+LRA AFYS   D+KTTQLILFGML+ E +   AQ HA AARRAGA++EELH V+ELAAAT  L  AN G +ML  L+ +E GG
Sbjct:   18 TYVEMFGVRPTLPEGRFEFSSAVNPEFLRISEKLRAHAFYSDVFDMKTTQLILFGMLMVEGHHA-AQMHALAARRAGATWEELHKVVELAAATRCLMPANQGFAMLNTLRKQEGGG 132          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A8J6XKS4_9CYAN (Carboxymuconolactone decarboxylase family protein n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XKS4_9CYAN)

HSP 1 Score: 127 bits (320), Expect = 1.370e-35
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 1
Query:    7 FRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKEAGG 363
            FR++Y ELFG++PPLPAA+FEFS +V+PE LR++EQLRA AFYS   D KTTQL+LFGMLL       A+ HA AAR+AGA++EELH V ELA+A  AL   NNG ++L  L+  EA G
Sbjct:   14 FRNSYAELFGSVPPLPAAKFEFSGDVDPEALRLAEQLRAHAFYSDIFDTKTTQLMLFGMLLTS-GAGAAKFHAIAARKAGATWEELHKVAELASAVVALGPLNNGSAILNELRTDEAKG 131          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A844M6S5_9CYAN (Carboxymuconolactone decarboxylase family protein n=1 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844M6S5_9CYAN)

HSP 1 Score: 124 bits (312), Expect = 2.310e-34
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    7 FRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQA---HAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKEAGG 363
            F+++Y ELFG++PPLPAA+FEFS +++PE LR++EQLRA AFYS   D KTTQL+LFGMLL     +GA A   HA AARR GA++EELH V ELA+A  AL   NNG ++L  L+  EA G
Sbjct:   14 FQNSYAELFGSVPPLPAAKFEFSGDIDPEALRLAEQLRAHAFYSDIFDTKTTQLMLFGMLLV----LGAGAARFHAIAARRTGATWEELHKVAELASAVVALGPLNNGSAILNELRTNEAKG 131          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A218QH88_9CYAN (CMD domain-containing protein n=2 Tax=Tolypothrichaceae TaxID=119859 RepID=A0A218QH88_9CYAN)

HSP 1 Score: 124 bits (311), Expect = 4.030e-34
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    7 FRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKE 354
            F D+Y ELFG +PPLP A+FEFSSE++PE LR++E+ RA AFY+K  D KTTQL+LFGMLL    P  A+ HA AARRAGA+++ELH V ELA+A  AL   NNG ++L  L+ +E
Sbjct:   16 FGDSYAELFGEVPPLPKAKFEFSSEIDPEGLRLAEKFRAHAFYNKTFDTKTTQLMLFGMLLVMGVPA-AKHHAIAARRAGATWQELHQVTELASAVVALGPFNNGSAILNELRHQE 130          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A838J5D9_9CHLR (Carboxymuconolactone decarboxylase family protein n=1 Tax=Ktedonobacteraceae bacterium TaxID=2740538 RepID=A0A838J5D9_9CHLR)

HSP 1 Score: 122 bits (307), Expect = 1.360e-33
Identity = 66/116 (56.90%), Postives = 89/116 (76.72%), Query Frame = 1
Query:    7 FRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKE 354
            FRD+Y E+FG++PPLPA +FEFS++V+P+ LR++EQLRA AFYS   D KTTQL+LF MLLA  +   A+ HA AARRAGA++EEL  V+ELA    AL   N+GG++L+ L+ +E
Sbjct:   16 FRDSYAEMFGSVPPLPAKKFEFSADVDPQALRLAEQLRAHAFYSDVFDTKTTQLLLFAMLLANGSGA-ARHHAQAARRAGATWEELQKVVELAGVVTALGPLNSGGALLQDLRTEE 130          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: UPI00036EA366 (carboxymuconolactone decarboxylase family protein n=1 Tax=Actinomycetospora chiangmaiensis TaxID=402650 RepID=UPI00036EA366)

HSP 1 Score: 98.6 bits (244), Expect = 4.300e-24
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   19 YVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKE 354
            Y +LFGT+PPLPAA+  F  +V P  L   E+LRAGAF+ + +D KT QL+LF MLL + +   A+ HA AARRAGA++EEL  V++LA A  AL  +N GG +L+ L+  E
Sbjct:   17 YTQLFGTVPPLPAAKLRFLGDVAPAALDRVEKLRAGAFFDETLDPKTVQLLLFAMLLVQGSGP-ARWHALAARRAGAAWEELAAVVDLATAVSALGPSNLGGQVLEELRRDE 127          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A831WZV7_9BACT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A831WZV7_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 7.570e-23
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 QKFRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKE 354
            ++ + TY++L G +PP   ARF  SS+++PE LR+ E++R    Y K  DVKT+QLILFGMLL   +   A+ HA AARRAGAS+EELH V  +A     L A N    +L  +  +E
Sbjct:    7 ERLKSTYIDLIGFIPPRIQARFRVSSQIDPEHLRLQEEMRTHCMYPKCFDVKTSQLILFGMLLMNLSEA-ARFHAIAARRAGASWEELHAVAAMAGLFRGLSAMNLASDLLDKMMQEE 123          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: A0A0K2SLM7_9FIRM (Carboxymuconolactone decarboxylase n=1 Tax=Limnochorda pilosa TaxID=1555112 RepID=A0A0K2SLM7_9FIRM)

HSP 1 Score: 92.0 bits (227), Expect = 1.830e-21
Identity = 57/118 (48.31%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 QKFRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKE 354
            Q+ R  Y EL G +PP   AR E  +E++PE LR+ E++R    Y    DVKT QL+LFGMLL       A+ HAAAARRAGAS+EE++ V+ LA     L AAN G  +LK ++D+E
Sbjct:   14 QELRARYQELVGFVPPRAGARIELLAELDPETLRMQEEIRRRLMYPACFDVKTAQLMLFGMLLMPLADA-ARLHAAAARRAGASWEEMNAVVGLAYLFRGLPAANLGALILKEIRDEE 130          
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Match: H9ZV95_THETH (Uncharacterized protein, gamma-carboxymuconolactone decarboxylase subunit like protein n=1 Tax=Thermus thermophilus JL-18 TaxID=798128 RepID=H9ZV95_THETH)

HSP 1 Score: 92.0 bits (227), Expect = 2.090e-21
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 QKFRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHIDVKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGALWAANNGGSMLKALKDKEAGGK 366
            ++ RD Y EL G +PP   AR +  + ++PE LR+ E+LRA   Y +  DVKT QL+LFGMLL + +   A+ HA AARRAGAS+EEL+ V+ LA     L AAN G  +++ ++  E  G+
Sbjct:   18 ERLRDRYRELIGFVPPRILARTDLLARLDPETLRLQEELRARLMYPRCFDVKTAQLMLFGMLLMDLSDA-ARLHAIAARRAGASYEELNAVVGLAYLFRGLPAANRGAEVIQEIRRMEEEGR 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13298.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EQ99_9HYPH1.580e-4967.77Carboxymuconolactone decarboxylase n=2 Tax=Rhodopl... [more]
A0A6L5FH23_9HYPH6.390e-3965.52Carboxymuconolactone decarboxylase family protein ... [more]
A0A8J6XKS4_9CYAN1.370e-3559.66Carboxymuconolactone decarboxylase family protein ... [more]
A0A844M6S5_9CYAN2.310e-3458.20Carboxymuconolactone decarboxylase family protein ... [more]
A0A218QH88_9CYAN4.030e-3458.62CMD domain-containing protein n=2 Tax=Tolypothrich... [more]
A0A838J5D9_9CHLR1.360e-3356.90Carboxymuconolactone decarboxylase family protein ... [more]
UPI00036EA3664.300e-2450.89carboxymuconolactone decarboxylase family protein ... [more]
A0A831WZV7_9BACT7.570e-2345.76Carboxymuconolactone decarboxylase family protein ... [more]
A0A0K2SLM7_9FIRM1.830e-2148.31Carboxymuconolactone decarboxylase n=1 Tax=Limnoch... [more]
H9ZV95_THETH2.090e-2145.08Uncharacterized protein, gamma-carboxymuconolacton... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13298contigP-wetherbeei_contig13298:2..370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120948.KB903217_gene832
PFAMsCMD
Model size369
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.06e-25
EggNOG OGsCOG0599@1|root,COG0599@2|Bacteria,2H0YI@201174|Actinobacteria
DescriptionCarboxymuconolactone decarboxylase family
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.2840192-CDS-P-wetherbeei_contig13298:1..3701683185980.2840192-CDS-P-wetherbeei_contig13298:1..370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13298 2..370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13298.1.1prot_P-wetherbeei_contig13298.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13298 2..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13298.1.1

>prot_P-wetherbeei_contig13298.1.1 ID=prot_P-wetherbeei_contig13298.1.1|Name=mRNA_P-wetherbeei_contig13298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
QKFRDTYVELFGTLPPLPAARFEFSSEVNPEFLRVSEQLRAGAFYSKHID
VKTTQLILFGMLLAEHNPVGAQAHAAAARRAGASFEELHTVMELAAATGA
LWAANNGGSMLKALKDKEAGGK*
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mRNA from alignment at P-wetherbeei_contig13298:2..370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13298.1.1 ID=mRNA_P-wetherbeei_contig13298.1.1|Name=mRNA_P-wetherbeei_contig13298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig13298:2..370+ (Phaeothamnion wetherbeei SAG_119_79)
CAGAAATTCCGCGACACCTATGTCGAGCTGTTCGGCACGCTGCCGCCGCT GCCGGCGGCGCGGTTCGAATTCTCCAGCGAGGTGAACCCGGAATTCCTGC GGGTGTCGGAGCAGCTCCGCGCCGGGGCGTTCTACTCCAAGCACATCGAC GTCAAGACCACGCAGCTCATCCTGTTCGGTATGCTGCTCGCCGAGCACAA CCCGGTCGGCGCCCAGGCGCACGCCGCGGCTGCGCGCCGCGCCGGCGCTA GCTTCGAGGAGCTGCACACGGTGATGGAGCTTGCCGCCGCGACCGGCGCG TTATGGGCCGCCAACAACGGCGGCTCGATGCTCAAGGCGCTGAAGGATAA GGAAGCCGGCGGGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13298:2..370+

>mRNA_P-wetherbeei_contig13298.1.1 ID=mRNA_P-wetherbeei_contig13298.1.1|Name=mRNA_P-wetherbeei_contig13298.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig13298:2..370+ (Phaeothamnion wetherbeei SAG_119_79)
CAGAAATTCCGCGACACCTATGTCGAGCTGTTCGGCACGCTGCCGCCGCT
GCCGGCGGCGCGGTTCGAATTCTCCAGCGAGGTGAACCCGGAATTCCTGC
GGGTGTCGGAGCAGCTCCGCGCCGGGGCGTTCTACTCCAAGCACATCGAC
GTCAAGACCACGCAGCTCATCCTGTTCGGTATGCTGCTCGCCGAGCACAA
CCCGGTCGGCGCCCAGGCGCACGCCGCGGCTGCGCGCCGCGCCGGCGCTA
GCTTCGAGGAGCTGCACACGGTGATGGAGCTTGCCGCCGCGACCGGCGCG
TTATGGGCCGCCAACAACGGCGGCTCGATGCTCAAGGCGCTGAAGGATAA
GGAAGCCGGCGGGAAATAG
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