mRNA_P-wetherbeei_contig13277.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13277.1.1
Unique NamemRNA_P-wetherbeei_contig13277.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.380e-58
Identity = 82/120 (68.33%), Postives = 102/120 (85.00%), Query Frame = 1 
Query:    1 CLNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            C +N+ +FFQERDGPIFP LRL+H+YP FMP M+VDKGAI F++NG+NIMC GFTS GGRM+  +E G+AVCIMAEGK+H LA+GLT MST++IR +N GIGVDNMHY+GDGLW +  L+
Sbjct:   63 CRDNKIMFFQERDGPIFPTLRLVHQYPNFMPKMQVDKGAIKFILNGSNIMCPGFTSAGGRMEESIEAGQAVCIMAEGKQHALAIGLTVMSTDEIREQNKGIGVDNMHYLGDGLWGVPDLD 182
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 3.270e-58
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = 1 
Query:    1 CLNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            C +  PLFFQ+RDG IFP LR+LHKYP  MP MRVDKGAISFVMNGANIMC+GFTS GGR+DTPLE G AVCI+AEGKK  LAVG T MST DI++ N GIGVDN+HY+GDGL+  K L+
Sbjct:   62 CCDGVPLFFQQRDGHIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCQGFTSKGGRIDTPLEAGAAVCILAEGKKVALAVGQTTMSTADIQSVNKGIGVDNLHYLGDGLFGTKELD 181
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: V4A5G0_LOTGI (PUA domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A5G0_LOTGI)

HSP 1 Score: 164 bits (416), Expect = 1.560e-49
Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    7 NNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            N + LFF+ RDGP  P LRLLHKYPF +P M+VDKGAI FV++GANIMC G TSPG RM T ++  + V IMAEGK+H +AVGLT+MSTEDI +KN GIGVDN+H++ DGLW++K ++
Sbjct:   66 NGDLLFFRHRDGPYCPTLRLLHKYPFILPHMQVDKGAIRFVLSGANIMCPGLTSPGARM-TKVDADKVVAIMAEGKEHAVAVGLTKMSTEDILSKNKGIGVDNLHFLNDGLWNMKGVK 182
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: A0A7M7JKZ7_VARDE (PUA domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7JKZ7_VARDE)

HSP 1 Score: 164 bits (414), Expect = 3.330e-49
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:    7 NNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
              EPLFF++R+GP FP LRLLHKYPF  P ++VDKGAI FV++GANIMC G TSPG +M   L+    V +MAEGK+H LAVGLT +S  DI  KN GIGV+NMHY+ DGLW +K ++
Sbjct:   67 QGEPLFFRQREGPYFPALRLLHKYPFICPWLQVDKGAIKFVLSGANIMCPGLTSPGAKMTPDLDKDTVVAVMAEGKEHALAVGLTSLSVADIAAKNKGIGVENMHYLNDGLWQMKPVK 184
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: A0A804QN62_MAIZE (PUA domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804QN62_MAIZE)

HSP 1 Score: 161 bits (408), Expect = 5.230e-49
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    4 LNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            +NN PLFF  RDGP  P LRLLH+YP  M   +VD+GAI FV++GANIMC G TSPGG +D  +E    V IMAEGK+H LA+G T+MS +DIRT N GIGVDNMHY+ DGLW ++ LE
Sbjct:   13 VNNVPLFFNIRDGPYMPTLRLLHQYPDIMKKFQVDRGAIKFVLSGANIMCPGLTSPGGALDDEVEEETPVAIMAEGKQHALAIGYTKMSAKDIRTINKGIGVDNMHYLNDGLWKMERLE 131
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: UPI001E1DCD36 (malignant T-cell-amplified sequence 1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCD36)

HSP 1 Score: 162 bits (411), Expect = 8.940e-49
Identity = 73/118 (61.86%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    7 NNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            + EP+FF++RDGP FP L+LLHKYPF +P M+VDKGAI FV++GANIMC G TSPG +M T ++  + V IMAEGK   LA+G+T+MST+DI  KN GIGVDN+HY+ DGLW++KA++
Sbjct:   66 SGEPIFFRQRDGPYFPTLKLLHKYPFILPHMQVDKGAIRFVLSGANIMCPGLTSPGAKM-TKVDKDQIVAIMAEGKGCALAIGVTKMSTDDILEKNKGIGVDNIHYLNDGLWNMKAVK 182
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: UPI00065BDD56 (malignant T-cell-amplified sequence 1 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI00065BDD56)

HSP 1 Score: 162 bits (409), Expect = 2.160e-48
Identity = 73/118 (61.86%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    7 NNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            + E LFF++RDGP+FP L+LLHKYPF +P M+VDKGAI FV++GANIMC G TSPG RM T ++  + V IMAEGK+H LA+G T+MSTE+I TKN G+GVDN+H++ DGLW +K ++
Sbjct:   72 SGEILFFRQRDGPLFPTLKLLHKYPFILPHMQVDKGAIRFVLSGANIMCPGLTSPGARM-TNVDKDQIVAIMAEGKQHALAIGQTKMSTEEIVTKNKGVGVDNIHFLNDGLWLMKTVK 188
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BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: A0A1B6Q3F1_SORBI (PUA domain-containing protein n=8 Tax=Poaceae TaxID=4479 RepID=A0A1B6Q3F1_SORBI)

HSP 1 Score: 161 bits (408), Expect = 2.470e-48
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    4 LNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            +NN PLFF  RDGP  P LRLLH+YP  M   +VD+GAI FV++GANIMC G TSPGG +D  +E    V IMAEGK+H LA+G T+MS +DIRT N GIGVDNMHY+ DGLW ++ LE
Sbjct:   63 VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLSGANIMCPGLTSPGGALDDEVEEETPVAIMAEGKQHALAIGYTKMSAKDIRTINKGIGVDNMHYLNDGLWKMERLE 181
[Close]
BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: K3XME7_SETIT (PUA domain-containing protein n=20 Tax=Poaceae TaxID=4479 RepID=K3XME7_SETIT)

HSP 1 Score: 161 bits (407), Expect = 3.510e-48
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 1 
Query:    4 LNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            +NN PLFF  RDGP  P LRLLH+YP  M   +VD+GAI FV++GANIMC G TSPGG +D  +E    V IMAEGK+H LA+G T+MS +DIRT N GIGVDNMHY+ DGLW ++ LE
Sbjct:   63 VNNVPLFFNIRDGPYMPTLRLLHQYPEIMKKFQVDRGAIKFVLSGANIMCPGLTSPGGVLDDEVEEETPVAIMAEGKQHALAIGFTKMSAKDIRTINKGIGVDNMHYLNDGLWKMEKLE 181
[Close]
BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Match: A0A446QHY6_TRITD (PUA domain-containing protein n=2 Tax=Poaceae TaxID=4479 RepID=A0A446QHY6_TRITD)

HSP 1 Score: 159 bits (402), Expect = 4.020e-48
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 1 
Query:    4 LNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIMCRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSGIGVDNMHYVGDGLWDLKALE 360
            +NN PLFF  RDGP  P LRLLH+YP  M   +VD+GAI FV++GANIMC G TSPGG +D  +E    V IMAEGK+H LA+G T+MS +DI T N GIGVDNMHY+ DGLW ++ LE
Sbjct:   11 VNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLSGANIMCPGLTSPGGVLDNEVEEETPVAIMAEGKQHALAIGFTKMSAKDISTINKGIGVDNMHYLNDGLWKMERLE 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13277.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9W5_9STRA2.380e-5868.33PUA-like domain-containing protein n=1 Tax=Tribone... [more]
D8LE03_ECTSI3.270e-5872.50PUA domain-containing protein n=2 Tax=Ectocarpus T... [more]
V4A5G0_LOTGI1.560e-4963.56PUA domain-containing protein n=1 Tax=Lottia gigan... [more]
A0A7M7JKZ7_VARDE3.330e-4961.02PUA domain-containing protein n=1 Tax=Varroa destr... [more]
A0A804QN62_MAIZE5.230e-4962.18PUA domain-containing protein n=1 Tax=Zea mays Tax... [more]
UPI001E1DCD368.940e-4961.86malignant T-cell-amplified sequence 1-like n=1 Tax... [more]
UPI00065BDD562.160e-4861.86malignant T-cell-amplified sequence 1 isoform X1 n... [more]
A0A1B6Q3F1_SORBI2.470e-4862.18PUA domain-containing protein n=8 Tax=Poaceae TaxI... [more]
K3XME7_SETIT3.510e-4862.18PUA domain-containing protein n=20 Tax=Poaceae Tax... [more]
A0A446QHY6_TRITD4.020e-4861.34PUA domain-containing protein n=2 Tax=Poaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13277contigP-wetherbeei_contig13277:2..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LE03
Preferred nameMCTS1
PFAMsPUA
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K02883,ko:K07575
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
Exons2
Evalue5.36e-59
EggNOG OGsCOG2016@1|root,KOG2523@2759|Eukaryota
Ec32 ortholog descriptionPUA domain
Ec32 orthologEc-05_004570.1
Descriptionformation of translation preinitiation complex
Cds size363
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185979.7244635-CDS-P-wetherbeei_contig13277:1..771683185979.7244635-CDS-P-wetherbeei_contig13277:1..77Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13277 2..77 +
1683185979.735852-CDS-P-wetherbeei_contig13277:497..7841683185979.735852-CDS-P-wetherbeei_contig13277:497..784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13277 498..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13277.1.1prot_P-wetherbeei_contig13277.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13277 2..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13277.1.1

>prot_P-wetherbeei_contig13277.1.1 ID=prot_P-wetherbeei_contig13277.1.1|Name=mRNA_P-wetherbeei_contig13277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
CLNNEPLFFQERDGPIFPVLRLLHKYPFFMPVMRVDKGAISFVMNGANIM
CRGFTSPGGRMDTPLEPGRAVCIMAEGKKHPLAVGLTQMSTEDIRTKNSG
IGVDNMHYVGDGLWDLKALE*
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mRNA from alignment at P-wetherbeei_contig13277:2..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13277.1.1 ID=mRNA_P-wetherbeei_contig13277.1.1|Name=mRNA_P-wetherbeei_contig13277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=783bp|location=Sequence derived from alignment at P-wetherbeei_contig13277:2..784+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCTCAACAACGAGCCGCTCTTCTTCCAGGAGCGCGACGGACCAATATT
TCCGGTGCTGAGATTGCTGCACAAATGTAAGTTCGCTGCAAAGCTCGAGG
AAGACCTTGTCGTTTTCTCTTCCTTTTCCCTTCGAATCTGTACCACCTTA
CTGCCTGAGTATGCGCTTGTTTCTACTTATGGAGTGGTTTGCTGGTTCAT
TTCCCGTTTCCTCTTAGTCCCTTATTCATGGACCATGATGTGCACCGAGG
GGGCCGCACCATTTATGAGCCTCAAAGCGTTGTCTTCCTCTGCCGCCTCA
ACAACCAACTATCTTTTCTCTCCGCCACTGCAACTCTCCCGAGCAGCGTT
TAAGTGCCTTGAAACGTTGTCTTGCTCTGCCGCCTGCATAACCACCTATC
TTTTCTCTCCGCCACCGCCACTCTCTGCCGTCCCGCCGCTGTCGCTGCTG
CGAAATATAACCCACCAACGGCAACGGGGCGGCGCAACACAAACAGACCC
GTTCTTCATGCCGGTGATGCGGGTGGATAAGGGTGCCATCAGCTTCGTCA
TGAACGGTGCCAACATAATGTGCCGCGGCTTCACCTCGCCTGGCGGCCGC
ATGGATACGCCGCTCGAGCCCGGGCGCGCCGTGTGCATCATGGCTGAGGG
CAAGAAGCACCCCCTGGCGGTTGGGCTGACGCAGATGTCGACCGAGGACA
TCCGCACCAAGAACTCGGGGATCGGCGTCGACAACATGCACTACGTCGGG
GACGGCCTATGGGACCTCAAAGCGTTAGAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13277:2..784+

>mRNA_P-wetherbeei_contig13277.1.1 ID=mRNA_P-wetherbeei_contig13277.1.1|Name=mRNA_P-wetherbeei_contig13277.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig13277:2..784+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCTCAACAACGAGCCGCTCTTCTTCCAGGAGCGCGACGGACCAATATT
TCCGGTGCTGAGATTGCTGCACAAATACCCGTTCTTCATGCCGGTGATGC
GGGTGGATAAGGGTGCCATCAGCTTCGTCATGAACGGTGCCAACATAATG
TGCCGCGGCTTCACCTCGCCTGGCGGCCGCATGGATACGCCGCTCGAGCC
CGGGCGCGCCGTGTGCATCATGGCTGAGGGCAAGAAGCACCCCCTGGCGG
TTGGGCTGACGCAGATGTCGACCGAGGACATCCGCACCAAGAACTCGGGG
ATCGGCGTCGACAACATGCACTACGTCGGGGACGGCCTATGGGACCTCAA
AGCGTTAGAATGA
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