mRNA_P-wetherbeei_contig1318.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1318.2.1
Unique NamemRNA_P-wetherbeei_contig1318.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1318.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1318contigP-wetherbeei_contig1318:1412..2897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1486
Hectar predicted targeting categoryother localisation
Exons1
Cds size879
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185976.2655468-UTR-P-wetherbeei_contig1318:1411..14681683185976.2655468-UTR-P-wetherbeei_contig1318:1411..1468Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1318 1412..1468 +
1683185976.2823982-UTR-P-wetherbeei_contig1318:2347..28971683185976.2823982-UTR-P-wetherbeei_contig1318:2347..2897Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1318 2348..2897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185976.274902-CDS-P-wetherbeei_contig1318:1468..23471683185976.274902-CDS-P-wetherbeei_contig1318:1468..2347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1318 1469..2347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1318.2.1prot_P-wetherbeei_contig1318.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1318 1469..2347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1318.2.1

>prot_P-wetherbeei_contig1318.2.1 ID=prot_P-wetherbeei_contig1318.2.1|Name=mRNA_P-wetherbeei_contig1318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=293bp
MLSNVLSFTGKAEYFFIGGVCRTWESAWLAGGGVATTSSKIGAAATPFGG
TTVEDSRKKTSRAAAVACMACMLWPMHSSGGLMRDAKLVKAEACSPAAID
VLQLGIDHGQLHAAREPVDEPSLAYRRSNLCDHTSCAGTWAWSSGLGQRA
SHCLRPPSGMRTKAAFWRLKRWVRANSCPWDRYLPQGAARFGDGHFSCGE
ATAHGTLRKEFETPSPRETTWRYFSGSGLRAANRSQRRWKNAVTQGKVDV
MRWLLRVCCQLWTPGRIRTAAGKQLAMGREISSYGCLGNCLD*
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mRNA from alignment at P-wetherbeei_contig1318:1412..2897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1318.2.1 ID=mRNA_P-wetherbeei_contig1318.2.1|Name=mRNA_P-wetherbeei_contig1318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1486bp|location=Sequence derived from alignment at P-wetherbeei_contig1318:1412..2897+ (Phaeothamnion wetherbeei SAG_119_79)
AACGAGGCACAGAAGCGCGGCCTTTACACTAAGGAGGACCTGCTCGAACA
GGGACCAATGCTGTCCAACGTCTTGAGCTTCACTGGCAAGGCCGAGTATT
TCTTCATCGGCGGCGTCTGCCGTACATGGGAATCAGCGTGGCTTGCGGGC
GGTGGCGTTGCAACTACCTCTTCCAAGATTGGCGCTGCCGCCACTCCTTT
CGGAGGCACCACGGTAGAGGACTCGCGCAAGAAGACTTCGCGGGCCGCTG
CCGTCGCATGCATGGCCTGCATGTTGTGGCCCATGCATAGTAGCGGCGGT
CTTATGCGGGACGCCAAGCTCGTCAAAGCTGAAGCTTGCTCTCCCGCGGC
CATCGACGTCCTCCAGCTTGGCATCGACCACGGCCAGCTTCACGCTGCTC
GCGAGCCCGTGGATGAGCCCTCATTGGCTTATCGGCGCTCCAACCTTTGC
GACCATACCTCCTGTGCGGGAACCTGGGCCTGGTCCAGTGGGCTCGGACA
GAGGGCATCGCATTGTCTGAGGCCACCATCAGGTATGCGTACCAAGGCGG
CCTTCTGGAGATTAAAGCGGTGGGTGCGGGCCAACAGCTGCCCGTGGGAC
CGGTATTTGCCGCAAGGTGCTGCTAGATTTGGTGATGGGCACTTCTCATG
CGGAGAAGCGACTGCCCATGGGACTCTCCGGAAGGAATTTGAGACGCCGT
CGCCTAGGGAAACCACCTGGAGGTACTTCAGTGGCTCAGGGCTGAGGGCT
GCAAATAGGAGCCAGAGGAGATGGAAGAATGCCGTGACACAAGGTAAAGT
CGACGTCATGCGCTGGTTACTGCGCGTGTGCTGCCAACTTTGGACGCCTG
GACGCATTCGAACGGCTGCGGGCAAACAGCTGGCCATGGGACGCGAAATC
TCGTCGTATGGCTGTCTTGGGAACTGTCTCGACTGAAAATGCGGAACTCA
TCGAGTGGGCCCATGCCAACGGTTGCCCTTGGGATGAAGAAAGTTGTAAG
AACGCGTCGCATCTCTGCAATTTGGAGGGTTTGTTGTGGCTGTGGGCGCG
CGGCTGCCCGTGGAGCACGACAACTTGCGCCGGAGGTTGGCTACATCGAG
ACTCGGCCCCACTCTCCCGCCGAAATTGCCGCCTTTCATCAGTGACTCCA
CGCCAACGGTTGCTCACGGCAACGGTCGGCGGTGCCGGCGGCACGCAGTG
GCGACAGGCCGCGGCGACACGCAGCATCGTCGATGCCGTCATTTCATGCG
CAGCGCAAGGCGCCAACTAAAGAGCTCGGTGCTGCGGAGCTCTATGTGAC
CGCACATAATCAGCTTTCTGCAGTACGTGTCTATGTGTGACCAGTGGGTT
TCTCATCCTAGCGGGCTTTCGCCTCTCCTCAGAGGACTTTCTCTTGCTGT
TGCAGCCGTGGAGCTCCTAAACGCGAATAACAGTAGCCGGAGGTCTACGG
GTCTACATAGTTTCTCGCGGCATATTTCACTCTCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1318:1412..2897+

>mRNA_P-wetherbeei_contig1318.2.1 ID=mRNA_P-wetherbeei_contig1318.2.1|Name=mRNA_P-wetherbeei_contig1318.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=879bp|location=Sequence derived from alignment at P-wetherbeei_contig1318:1412..2897+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTCCAACGTCTTGAGCTTCACTGGCAAGGCCGAGTATTTCTTCAT
CGGCGGCGTCTGCCGTACATGGGAATCAGCGTGGCTTGCGGGCGGTGGCG
TTGCAACTACCTCTTCCAAGATTGGCGCTGCCGCCACTCCTTTCGGAGGC
ACCACGGTAGAGGACTCGCGCAAGAAGACTTCGCGGGCCGCTGCCGTCGC
ATGCATGGCCTGCATGTTGTGGCCCATGCATAGTAGCGGCGGTCTTATGC
GGGACGCCAAGCTCGTCAAAGCTGAAGCTTGCTCTCCCGCGGCCATCGAC
GTCCTCCAGCTTGGCATCGACCACGGCCAGCTTCACGCTGCTCGCGAGCC
CGTGGATGAGCCCTCATTGGCTTATCGGCGCTCCAACCTTTGCGACCATA
CCTCCTGTGCGGGAACCTGGGCCTGGTCCAGTGGGCTCGGACAGAGGGCA
TCGCATTGTCTGAGGCCACCATCAGGTATGCGTACCAAGGCGGCCTTCTG
GAGATTAAAGCGGTGGGTGCGGGCCAACAGCTGCCCGTGGGACCGGTATT
TGCCGCAAGGTGCTGCTAGATTTGGTGATGGGCACTTCTCATGCGGAGAA
GCGACTGCCCATGGGACTCTCCGGAAGGAATTTGAGACGCCGTCGCCTAG
GGAAACCACCTGGAGGTACTTCAGTGGCTCAGGGCTGAGGGCTGCAAATA
GGAGCCAGAGGAGATGGAAGAATGCCGTGACACAAGGTAAAGTCGACGTC
ATGCGCTGGTTACTGCGCGTGTGCTGCCAACTTTGGACGCCTGGACGCAT
TCGAACGGCTGCGGGCAAACAGCTGGCCATGGGACGCGAAATCTCGTCGT
ATGGCTGTCTTGGGAACTGTCTCGACTGA
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