mRNA_P-wetherbeei_contig9995.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9995.1.1
Unique NamemRNA_P-wetherbeei_contig9995.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9995.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9995contigP-wetherbeei_contig9995:1841..2429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8V1
PFAMsXRN_N
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.21e-11
EggNOG OGsCOG5049@1|root,KOG2045@2759|Eukaryota
Description5'-3' exonuclease activity
Cds size270
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.047974-CDS-P-wetherbeei_contig9995:1840..20971683187120.047974-CDS-P-wetherbeei_contig9995:1840..2097Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9995 1841..2097 -
1683187120.0612948-CDS-P-wetherbeei_contig9995:2404..24171683187120.0612948-CDS-P-wetherbeei_contig9995:2404..2417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9995 2405..2417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.0702221-UTR-P-wetherbeei_contig9995:2417..24291683187120.0702221-UTR-P-wetherbeei_contig9995:2417..2429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9995 2418..2429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9995.1.1prot_P-wetherbeei_contig9995.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9995 1841..2417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9995.1.1

>prot_P-wetherbeei_contig9995.1.1 ID=prot_P-wetherbeei_contig9995.1.1|Name=mRNA_P-wetherbeei_contig9995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MYIDAGYAPDHYFRYDHHFAPAAEEVVNWIAAHDGRPWDIRVPVSPLPPL
PAAVACLAMMPLRGQALVAPSLAPLMASGSPVAALFQPAA
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mRNA from alignment at P-wetherbeei_contig9995:1841..2429-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9995.1.1 ID=mRNA_P-wetherbeei_contig9995.1.1|Name=mRNA_P-wetherbeei_contig9995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=589bp|location=Sequence derived from alignment at P-wetherbeei_contig9995:1841..2429- (Phaeothamnion wetherbeei SAG_119_79)
TGGAACGTGCAAATGTACATCGACGGTGCGTTGGTGTGATTGTTGGTTAC
CCCCTCTGTTATGCAAGTTGCGGTGGCAAGAAGGTGCAGTTTTCGAACTG
AATCCTGCTACCTCGGATGGTGGACGATGTTATTATATTGTTGCCAGGTA
CTATTTGGCGCTCCTTTCCCGGGCACTTCTTGCGAAGAGCGATGGCCTAG
TCTTTGAGCAGGCTTTGTGGGAGGCTTTCGCGCTTATATTTGTTGCAATT
TCCGTCTTAACTCTCCCGCTATCTCGGGCCACCTTTCTTCCTTCGCGAAT
TCCTAATTTCCGACACGTTTCCTCGTTCCGAGCAGGCTACGCCCCCGATC
ATTACTTCCGTTACGACCACCACTTCGCCCCTGCGGCGGAGGAGGTCGTC
AACTGGATCGCGGCGCACGACGGGCGGCCGTGGGACATTCGGGTCCCCGT
CAGCCCGCTGCCACCGCTGCCGGCCGCTGTCGCCTGCCTCGCGATGATGC
CGCTGCGCGGGCAGGCCCTCGTGGCGCCGTCACTGGCGCCGCTCATGGCC
TCCGGCTCGCCCGTGGCGGCGCTCTTCCAGCCGGCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9995:1841..2429-

>mRNA_P-wetherbeei_contig9995.1.1 ID=mRNA_P-wetherbeei_contig9995.1.1|Name=mRNA_P-wetherbeei_contig9995.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig9995:1841..2429- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACATCGACGCAGGCTACGCCCCCGATCATTACTTCCGTTACGACCA
CCACTTCGCCCCTGCGGCGGAGGAGGTCGTCAACTGGATCGCGGCGCACG
ACGGGCGGCCGTGGGACATTCGGGTCCCCGTCAGCCCGCTGCCACCGCTG
CCGGCCGCTGTCGCCTGCCTCGCGATGATGCCGCTGCGCGGGCAGGCCCT
CGTGGCGCCGTCACTGGCGCCGCTCATGGCCTCCGGCTCGCCCGTGGCGG
CGCTCTTCCAGCCGGCCGCG
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