mRNA_P-wetherbeei_contig9994.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9994.1.1
Unique NamemRNA_P-wetherbeei_contig9994.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9994contigP-wetherbeei_contig9994:38..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LE27
PFAMsATG2_CAD,ATG_C,Chorein_N
Model size1074
Max annot lvl2759|Eukaryota
KEGG koko:K17906
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.75e-05
EggNOG OGsKOG2993@1|root,KOG2993@2759|Eukaryota
Descriptionautophagy of peroxisome
Cds size972
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187119.9962778-CDS-P-wetherbeei_contig9994:37..10091683187119.9962778-CDS-P-wetherbeei_contig9994:37..1009Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9994 38..1009 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187120.0085278-UTR-P-wetherbeei_contig9994:1009..10321683187120.0085278-UTR-P-wetherbeei_contig9994:1009..1032Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9994 1010..1032 -
1683187120.0186357-UTR-P-wetherbeei_contig9994:1072..11511683187120.0186357-UTR-P-wetherbeei_contig9994:1072..1151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9994 1073..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9994.1.1prot_P-wetherbeei_contig9994.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9994 38..1009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9994.1.1

>prot_P-wetherbeei_contig9994.1.1 ID=prot_P-wetherbeei_contig9994.1.1|Name=mRNA_P-wetherbeei_contig9994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
MVSADIPTAEHVRAERRNRVDSPTCAPQGWHSDGGGTFGSAGTAVRHWTG
SSTPGLPCWSPPVDPSTAAFPVATAAAATSPSAPAHPAAGMQPARACGSP
NWGGDGAEQQAHWFQADDAGGSAATAAVGAASAGSAPGAGAAGSGLGLRI
YPHHVPVPTSADYSPFRHGLPQALSHGRDAKAANAAAGGGGGGYGLPADG
GDGRDEACAAGGGAVQLRLIVHDVCVRWRLFGGWDWPAPAPPQASAPARP
VYSGSHTYEDGAGDGGSRGAGSSRAVRVSAVGGKHDRSDVAASAGADGDD
GGAYAGTLRRAALLEGLLENYAEG
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mRNA from alignment at P-wetherbeei_contig9994:38..1151-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9994.1.1 ID=mRNA_P-wetherbeei_contig9994.1.1|Name=mRNA_P-wetherbeei_contig9994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1114bp|location=Sequence derived from alignment at P-wetherbeei_contig9994:38..1151- (Phaeothamnion wetherbeei SAG_119_79)
GCTTTGGAATGTTGGCGGCGATGAGTCTGGCGGACGGCGACCGACGCCGC
CGGCAACGGGAGCTTTCGCTGCTCCTTCGCTGCCGCCGTCGCCGCCGCCG
CCGCCGCCGCCGCCGCCGCTGCCGCCGCTGCCAGTACTGCAGATGGTTTC
GGCGGACATCCCAACAGCCGAGCACGTTAGGGCCGAGCGCCGAAACAGAG
TAGACAGCCCGACTTGCGCTCCTCAGGGCTGGCACAGCGACGGCGGCGGC
ACTTTTGGCAGCGCCGGCACTGCGGTGCGTCATTGGACCGGCAGCTCCAC
GCCCGGATTGCCTTGCTGGTCTCCGCCGGTCGACCCTTCCACTGCAGCAT
TCCCGGTGGCGACGGCAGCTGCGGCAACGTCACCGTCGGCGCCGGCACAT
CCGGCGGCTGGGATGCAGCCGGCGAGAGCGTGTGGCAGCCCTAACTGGGG
CGGAGATGGGGCCGAGCAGCAAGCGCACTGGTTTCAGGCCGATGACGCCG
GCGGTTCTGCCGCCACCGCCGCTGTCGGCGCCGCCAGCGCAGGCAGCGCG
CCCGGCGCGGGTGCTGCGGGCTCCGGGCTTGGCCTGCGCATCTACCCGCA
CCATGTGCCGGTGCCGACATCGGCGGACTACAGCCCGTTTCGCCACGGCC
TGCCGCAGGCGCTCTCGCACGGCCGGGATGCCAAAGCCGCAAACGCCGCG
GCGGGCGGCGGCGGCGGCGGCTATGGTCTTCCGGCGGACGGTGGGGACGG
CCGCGACGAGGCCTGCGCAGCGGGGGGCGGGGCGGTGCAGCTGCGGCTGA
TTGTGCACGACGTCTGCGTCCGCTGGCGTCTCTTCGGCGGCTGGGACTGG
CCGGCGCCGGCACCGCCGCAGGCCTCGGCTCCGGCCCGCCCCGTCTATTC
TGGCAGTCATACATATGAAGACGGTGCCGGCGACGGCGGATCGCGAGGCG
CCGGCTCCAGCCGCGCCGTGAGGGTGAGCGCGGTCGGCGGCAAGCACGAC
CGGAGTGACGTGGCTGCCAGCGCCGGCGCCGATGGCGACGACGGCGGCGC
ATATGCCGGCACGCTCCGGCGGGCGGCACTGCTTGAAGGGCTGCTCGAGA
ATTACGCGGAAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9994:38..1151-

>mRNA_P-wetherbeei_contig9994.1.1 ID=mRNA_P-wetherbeei_contig9994.1.1|Name=mRNA_P-wetherbeei_contig9994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig9994:38..1151- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTCGGCGGACATCCCAACAGCCGAGCACGTTAGGGCCGAGCGCCG
AAACAGAGTAGACAGCCCGACTTGCGCTCCTCAGGGCTGGCACAGCGACG
GCGGCGGCACTTTTGGCAGCGCCGGCACTGCGGTGCGTCATTGGACCGGC
AGCTCCACGCCCGGATTGCCTTGCTGGTCTCCGCCGGTCGACCCTTCCAC
TGCAGCATTCCCGGTGGCGACGGCAGCTGCGGCAACGTCACCGTCGGCGC
CGGCACATCCGGCGGCTGGGATGCAGCCGGCGAGAGCGTGTGGCAGCCCT
AACTGGGGCGGAGATGGGGCCGAGCAGCAAGCGCACTGGTTTCAGGCCGA
TGACGCCGGCGGTTCTGCCGCCACCGCCGCTGTCGGCGCCGCCAGCGCAG
GCAGCGCGCCCGGCGCGGGTGCTGCGGGCTCCGGGCTTGGCCTGCGCATC
TACCCGCACCATGTGCCGGTGCCGACATCGGCGGACTACAGCCCGTTTCG
CCACGGCCTGCCGCAGGCGCTCTCGCACGGCCGGGATGCCAAAGCCGCAA
ACGCCGCGGCGGGCGGCGGCGGCGGCGGCTATGGTCTTCCGGCGGACGGT
GGGGACGGCCGCGACGAGGCCTGCGCAGCGGGGGGCGGGGCGGTGCAGCT
GCGGCTGATTGTGCACGACGTCTGCGTCCGCTGGCGTCTCTTCGGCGGCT
GGGACTGGCCGGCGCCGGCACCGCCGCAGGCCTCGGCTCCGGCCCGCCCC
GTCTATTCTGGCAGTCATACATATGAAGACGGTGCCGGCGACGGCGGATC
GCGAGGCGCCGGCTCCAGCCGCGCCGTGAGGGTGAGCGCGGTCGGCGGCA
AGCACGACCGGAGTGACGTGGCTGCCAGCGCCGGCGCCGATGGCGACGAC
GGCGGCGCATATGCCGGCACGCTCCGGCGGGCGGCACTGCTTGAAGGGCT
GCTCGAGAATTACGCGGAAGGA
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