mRNA_P-wetherbeei_contig9962.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9962.3.1
Unique NamemRNA_P-wetherbeei_contig9962.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9962.3.1 vs. uniprot
Match: A0A7S4A0V2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0V2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.440e-6
Identity = 27/53 (50.94%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 LDSRLATASELFNDCAYPYCLFECCLALLASCGSDEPSLVAQLWTSLIFRETP 159
            L+SRL   SEL+ND A  Y +++ CLA L  CG D+  L  +LWTSLI R  P
Sbjct: 1454 LESRLVGVSELYNDVASRYGMWDVCLATLKVCGHDDEPLAVKLWTSLIKRLVP 1506
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BLAST of mRNA_P-wetherbeei_contig9962.3.1 vs. uniprot
Match: F0YFH0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFH0_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.680e-6
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 LDSRLATASELFNDCAYPYCLFECCLALLASCGSDEPSLVAQLWTSLIFRETPRPIQYGAGTASAADA 204
            L+ RL   SEL+ND A  Y +++ CL  L  CG D+  L  +LWTSL+ R  PR  +  +  A   DA
Sbjct: 1533 LEERLVGVSELYNDVASRYGMWDLCLVTLKVCGHDDEPLAVKLWTSLLRRLVPRRARDASAQARLGDA 1600
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9962.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4A0V2_9STRA1.440e-650.94Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YFH0_AURAN2.680e-641.18Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9962contigP-wetherbeei_contig9962:1633..2133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009039203.1
Preferred nameNUP155
PFAMsNucleoporin_C,Nucleoporin_N
Model size390
Max annot lvl2759|Eukaryota
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007088,GO:0007096,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007346,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010564,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1901987,GO:1901990,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
Exons2
Evalue4.4e-07
EggNOG OGsCOG5308@1|root,KOG1900@2759|Eukaryota
Descriptionprotein localization to nuclear inner membrane
Cds size390
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187119.1368344-CDS-P-wetherbeei_contig9962:1632..18441683187119.1368344-CDS-P-wetherbeei_contig9962:1632..1844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9962 1633..1844 +
1683187119.1475534-CDS-P-wetherbeei_contig9962:1955..21331683187119.1475534-CDS-P-wetherbeei_contig9962:1955..2133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9962 1956..2133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9962.3.1prot_P-wetherbeei_contig9962.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9962 1633..2133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9962.3.1

>prot_P-wetherbeei_contig9962.3.1 ID=prot_P-wetherbeei_contig9962.3.1|Name=mRNA_P-wetherbeei_contig9962.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
LDSRLATASELFNDCAYPYCLFECCLALLASCGSDEPSLVAQLWTSLIFR
ETPRPIQYGAGTASAADAWLHEVAVALAAAKIGAAASFVDSGWLRAACVR
VAAAIASLPGPGRDLVLPLPLIVEELEGLA
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mRNA from alignment at P-wetherbeei_contig9962:1633..2133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9962.3.1 ID=mRNA_P-wetherbeei_contig9962.3.1|Name=mRNA_P-wetherbeei_contig9962.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig9962:1633..2133+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACTCGCGGCTGGCGACGGCGTCGGAGCTGTTCAACGACTGCGCGTA
CCCGTACTGCCTCTTCGAGTGCTGCCTGGCGCTGCTGGCGTCGTGCGGCT
CGGACGAGCCGTCGCTGGTGGCGCAGCTCTGGACCTCGCTGATCTTCCGG
GAGACGCCGCGCCCGATCCAGTACGGCGCCGGCACCGCGTCGGCCGCAGA
TGCCTGGCTGCAGTCGCGCCTCCAGCAGTCCAACGTCCTCCACGACGAGG
TCGCCGACGCCGAAGCCGCCGTCGCCGCCGCCGCACGCTGCGCCCAACGC
AGCAACAGTGGTGGCGGCGGCAGCGAGGTGGCGGTGGCACTAGCGGCGGC
GAAGATCGGGGCGGCGGCCAGTTTCGTCGACAGCGGGTGGCTGCGGGCGG
CGTGCGTGCGCGTCGCGGCGGCGATCGCCAGCCTGCCGGGGCCCGGGCGG
GACCTGGTGCTGCCGCTGCCGCTCATCGTAGAGGAGTTGGAAGGGCTTGC
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9962:1633..2133+

>mRNA_P-wetherbeei_contig9962.3.1 ID=mRNA_P-wetherbeei_contig9962.3.1|Name=mRNA_P-wetherbeei_contig9962.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig9962:1633..2133+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGACTCGCGGCTGGCGACGGCGTCGGAGCTGTTCAACGACTGCGCGTA
CCCGTACTGCCTCTTCGAGTGCTGCCTGGCGCTGCTGGCGTCGTGCGGCT
CGGACGAGCCGTCGCTGGTGGCGCAGCTCTGGACCTCGCTGATCTTCCGG
GAGACGCCGCGCCCGATCCAGTACGGCGCCGGCACCGCGTCGGCCGCAGA
TGCCTGGCTGCACGAGGTGGCGGTGGCACTAGCGGCGGCGAAGATCGGGG
CGGCGGCCAGTTTCGTCGACAGCGGGTGGCTGCGGGCGGCGTGCGTGCGC
GTCGCGGCGGCGATCGCCAGCCTGCCGGGGCCCGGGCGGGACCTGGTGCT
GCCGCTGCCGCTCATCGTAGAGGAGTTGGAAGGGCTTGCG
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