mRNA_P-wetherbeei_contig9959.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9959.3.1
Unique NamemRNA_P-wetherbeei_contig9959.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9959.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9959contigP-wetherbeei_contig9959:744..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL11
PFAMsRibosomal_L23
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue8.98e-06
EggNOG OGs2CJ9U@1|root,2S3T6@2759|Eukaryota
DescriptionRibosomal protein L23
Cds size132
COG categoryS
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.8918257-CDS-P-wetherbeei_contig9959:743..8241683187118.8918257-CDS-P-wetherbeei_contig9959:743..824Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9959 744..824 +
1683187118.902101-CDS-P-wetherbeei_contig9959:983..10341683187118.902101-CDS-P-wetherbeei_contig9959:983..1034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9959 984..1034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9959.3.1prot_P-wetherbeei_contig9959.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9959 744..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9959.3.1

>prot_P-wetherbeei_contig9959.3.1 ID=prot_P-wetherbeei_contig9959.3.1|Name=mRNA_P-wetherbeei_contig9959.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
IYNVPVTKVRTENVLGKRGHVVGKHSKVLRFKRPDFKRATVVID
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mRNA from alignment at P-wetherbeei_contig9959:744..1034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9959.3.1 ID=mRNA_P-wetherbeei_contig9959.3.1|Name=mRNA_P-wetherbeei_contig9959.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig9959:744..1034+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTACAACGTGCCTGTAACAAAAGTGCGGACGGAGAACGTTTTGGGAAA
GCGTGGGCACGTTGTGGGCAAGCACTCAAAGGTCAGGACTTGGTCTGTCA
TTCTTTGAAGAGAGATGTGGTTTTCCATTCCCATCCTTGCGCTCGCTTCT
AATGTAAGGCTTTCACGTCTGCCGTATCGTCCGCTCCACGCACGTTTCAC
GCAACCAGTTTCGGCCGCTTTTCCCGTGCGTTGCATCCAGGTTTTGCGCT
TCAAAAGACCAGACTTCAAGCGGGCAACGGTGGTAATAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9959:744..1034+

>mRNA_P-wetherbeei_contig9959.3.1 ID=mRNA_P-wetherbeei_contig9959.3.1|Name=mRNA_P-wetherbeei_contig9959.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig9959:744..1034+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTACAACGTGCCTGTAACAAAAGTGCGGACGGAGAACGTTTTGGGAAA
GCGTGGGCACGTTGTGGGCAAGCACTCAAAGGTTTTGCGCTTCAAAAGAC
CAGACTTCAAGCGGGCAACGGTGGTAATAGAC
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